data_4DC4
#
_model_server_result.job_id            eVkHcDpvAGDs9FaBcU8cwg 
_model_server_result.datetime_utc      '2024-11-25 04:05:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dc4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":203}' 
#
_entry.id    4DC4 
#
_exptl.entry_id    4DC4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DC4 
_cell.length_a            31.472 
_cell.length_b            92.35 
_cell.length_c            114.239 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DC4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,L 1 1 
B,I,J,K,M 2 1 
C,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 B SG CYS 6 B CYS 6 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 B SG CYS 30 B CYS 30 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 B SG CYS 64 B CYS 64 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf8 B SG CYS 76 B CYS 76 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 C SG CYS 6 C CYS 6 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf10 C SG CYS 30 C CYS 30 1_555 C SG CYS 115 C CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf11 C SG CYS 64 C CYS 64 1_555 C SG CYS 80 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf12 C SG CYS 76 C CYS 76 1_555 C SG CYS 94 C CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4DC4 
_atom_sites.fract_transf_matrix[1][1]    0.031774 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010828 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008754 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 201 2 CL CL . 
E 3 NA A 1 202 1 NA NA . 
F 3 NA A 1 203 3 NA NA . 
G 4 GOL A 1 204 2 GOL GOL . 
H 4 GOL A 1 205 3 GOL GOL . 
I 2 CL B 1 201 1 CL CL . 
J 3 NA B 1 202 2 NA NA . 
K 4 GOL B 1 203 1 GOL GOL . 
L 5 HOH A 1 301 4 HOH HOH . 
L 5 HOH A 2 302 8 HOH HOH . 
L 5 HOH A 3 303 9 HOH HOH . 
L 5 HOH A 4 304 11 HOH HOH . 
L 5 HOH A 5 305 12 HOH HOH . 
L 5 HOH A 6 306 13 HOH HOH . 
L 5 HOH A 7 307 15 HOH HOH . 
L 5 HOH A 8 308 21 HOH HOH . 
L 5 HOH A 9 309 22 HOH HOH . 
L 5 HOH A 10 310 24 HOH HOH . 
L 5 HOH A 11 311 29 HOH HOH . 
L 5 HOH A 12 312 31 HOH HOH . 
L 5 HOH A 13 313 32 HOH HOH . 
L 5 HOH A 14 314 35 HOH HOH . 
L 5 HOH A 15 315 37 HOH HOH . 
L 5 HOH A 16 316 39 HOH HOH . 
L 5 HOH A 17 317 46 HOH HOH . 
L 5 HOH A 18 318 49 HOH HOH . 
L 5 HOH A 19 319 52 HOH HOH . 
L 5 HOH A 20 320 57 HOH HOH . 
L 5 HOH A 21 321 63 HOH HOH . 
L 5 HOH A 22 322 64 HOH HOH . 
L 5 HOH A 23 323 65 HOH HOH . 
L 5 HOH A 24 324 67 HOH HOH . 
L 5 HOH A 25 325 69 HOH HOH . 
M 5 HOH B 1 301 1 HOH HOH . 
M 5 HOH B 2 302 5 HOH HOH . 
M 5 HOH B 3 303 7 HOH HOH . 
M 5 HOH B 4 304 19 HOH HOH . 
M 5 HOH B 5 305 25 HOH HOH . 
M 5 HOH B 6 306 26 HOH HOH . 
M 5 HOH B 7 307 30 HOH HOH . 
M 5 HOH B 8 308 34 HOH HOH . 
M 5 HOH B 9 309 36 HOH HOH . 
M 5 HOH B 10 310 38 HOH HOH . 
M 5 HOH B 11 311 43 HOH HOH . 
M 5 HOH B 12 312 44 HOH HOH . 
M 5 HOH B 13 313 47 HOH HOH . 
M 5 HOH B 14 314 50 HOH HOH . 
M 5 HOH B 15 315 56 HOH HOH . 
M 5 HOH B 16 316 59 HOH HOH . 
M 5 HOH B 17 317 60 HOH HOH . 
N 5 HOH C 1 201 2 HOH HOH . 
N 5 HOH C 2 202 3 HOH HOH . 
N 5 HOH C 3 203 6 HOH HOH . 
N 5 HOH C 4 204 10 HOH HOH . 
N 5 HOH C 5 205 14 HOH HOH . 
N 5 HOH C 6 206 16 HOH HOH . 
N 5 HOH C 7 207 17 HOH HOH . 
N 5 HOH C 8 208 18 HOH HOH . 
N 5 HOH C 9 209 20 HOH HOH . 
N 5 HOH C 10 210 23 HOH HOH . 
N 5 HOH C 11 211 27 HOH HOH . 
N 5 HOH C 12 212 28 HOH HOH . 
N 5 HOH C 13 213 33 HOH HOH . 
N 5 HOH C 14 214 40 HOH HOH . 
N 5 HOH C 15 215 41 HOH HOH . 
N 5 HOH C 16 216 42 HOH HOH . 
N 5 HOH C 17 217 45 HOH HOH . 
N 5 HOH C 18 218 48 HOH HOH . 
N 5 HOH C 19 219 51 HOH HOH . 
N 5 HOH C 20 220 53 HOH HOH . 
N 5 HOH C 21 221 54 HOH HOH . 
N 5 HOH C 22 222 55 HOH HOH . 
N 5 HOH C 23 223 58 HOH HOH . 
N 5 HOH C 24 224 61 HOH HOH . 
N 5 HOH C 25 225 62 HOH HOH . 
N 5 HOH C 26 226 66 HOH HOH . 
N 5 HOH C 27 227 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 18.236 -29.914 -22.999 1 30.84 ? C1 GOL 203 B 1 
HETATM 2 O O1 GOL . . . K 4 17.947 -28.713 -22.293 1 25.95 ? O1 GOL 203 B 1 
HETATM 3 C C2 GOL . . . K 4 19.314 -30.752 -22.302 1 36.85 ? C2 GOL 203 B 1 
HETATM 4 O O2 GOL . . . K 4 19.324 -30.484 -20.906 1 42.05 ? O2 GOL 203 B 1 
HETATM 5 C C3 GOL . . . K 4 19.059 -32.246 -22.528 1 29.92 ? C3 GOL 203 B 1 
HETATM 6 O O3 GOL . . . K 4 19.331 -32.6 -23.867 1 27.65 ? O3 GOL 203 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#