data_4DC8
#
_model_server_result.job_id            2opzcTKcwa7kgKBOzytsvA 
_model_server_result.datetime_utc      '2024-12-26 19:28:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dc8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4DC8 
#
_exptl.entry_id    4DC8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.05 
_cell.angle_gamma         90 
_cell.entry_id            4DC8 
_cell.length_a            35.363 
_cell.length_b            28.794 
_cell.length_c            63.056 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DC8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc2 B FE HEM . A HEM 201 1_555 F O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     4DC8 
_atom_sites.fract_transf_matrix[1][1]    0.028278 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008134 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 154 HEM HEM . 
C 3 SO4 A 1 202 155 SO4 SO4 . 
D 3 SO4 A 1 203 156 SO4 SO4 . 
E 3 SO4 A 1 204 157 SO4 SO4 . 
F 4 HOH A 1 301 1 HOH HOH . 
F 4 HOH A 2 302 2 HOH HOH . 
F 4 HOH A 3 303 3 HOH HOH . 
F 4 HOH A 4 304 4 HOH HOH . 
F 4 HOH A 5 305 5 HOH HOH . 
F 4 HOH A 6 306 6 HOH HOH . 
F 4 HOH A 7 307 7 HOH HOH . 
F 4 HOH A 8 308 8 HOH HOH . 
F 4 HOH A 9 309 9 HOH HOH . 
F 4 HOH A 10 310 10 HOH HOH . 
F 4 HOH A 11 311 11 HOH HOH . 
F 4 HOH A 12 312 12 HOH HOH . 
F 4 HOH A 13 313 13 HOH HOH . 
F 4 HOH A 14 314 14 HOH HOH . 
F 4 HOH A 15 315 15 HOH HOH . 
F 4 HOH A 16 316 16 HOH HOH . 
F 4 HOH A 17 317 17 HOH HOH . 
F 4 HOH A 18 318 18 HOH HOH . 
F 4 HOH A 19 319 19 HOH HOH . 
F 4 HOH A 20 320 20 HOH HOH . 
F 4 HOH A 21 321 21 HOH HOH . 
F 4 HOH A 22 322 22 HOH HOH . 
F 4 HOH A 23 323 23 HOH HOH . 
F 4 HOH A 24 324 24 HOH HOH . 
F 4 HOH A 25 325 25 HOH HOH . 
F 4 HOH A 26 326 26 HOH HOH . 
F 4 HOH A 27 327 27 HOH HOH . 
F 4 HOH A 28 328 28 HOH HOH . 
F 4 HOH A 29 329 29 HOH HOH . 
F 4 HOH A 30 330 30 HOH HOH . 
F 4 HOH A 31 331 31 HOH HOH . 
F 4 HOH A 32 332 32 HOH HOH . 
F 4 HOH A 33 333 33 HOH HOH . 
F 4 HOH A 34 334 34 HOH HOH . 
F 4 HOH A 35 335 35 HOH HOH . 
F 4 HOH A 36 336 36 HOH HOH . 
F 4 HOH A 37 337 37 HOH HOH . 
F 4 HOH A 38 338 38 HOH HOH . 
F 4 HOH A 39 339 39 HOH HOH . 
F 4 HOH A 40 340 40 HOH HOH . 
F 4 HOH A 41 341 41 HOH HOH . 
F 4 HOH A 42 342 42 HOH HOH . 
F 4 HOH A 43 343 43 HOH HOH . 
F 4 HOH A 44 344 44 HOH HOH . 
F 4 HOH A 45 345 45 HOH HOH . 
F 4 HOH A 46 346 46 HOH HOH . 
F 4 HOH A 47 347 47 HOH HOH . 
F 4 HOH A 48 348 48 HOH HOH . 
F 4 HOH A 49 349 49 HOH HOH . 
F 4 HOH A 50 350 50 HOH HOH . 
F 4 HOH A 51 351 51 HOH HOH . 
F 4 HOH A 52 352 52 HOH HOH . 
F 4 HOH A 53 353 54 HOH HOH . 
F 4 HOH A 54 354 55 HOH HOH . 
F 4 HOH A 55 355 56 HOH HOH . 
F 4 HOH A 56 356 58 HOH HOH . 
F 4 HOH A 57 357 59 HOH HOH . 
F 4 HOH A 58 358 60 HOH HOH . 
F 4 HOH A 59 359 61 HOH HOH . 
F 4 HOH A 60 360 62 HOH HOH . 
F 4 HOH A 61 361 63 HOH HOH . 
F 4 HOH A 62 362 64 HOH HOH . 
F 4 HOH A 63 363 65 HOH HOH . 
F 4 HOH A 64 364 66 HOH HOH . 
F 4 HOH A 65 365 67 HOH HOH . 
F 4 HOH A 66 366 68 HOH HOH . 
F 4 HOH A 67 367 69 HOH HOH . 
F 4 HOH A 68 368 70 HOH HOH . 
F 4 HOH A 69 369 71 HOH HOH . 
F 4 HOH A 70 370 72 HOH HOH . 
F 4 HOH A 71 371 73 HOH HOH . 
F 4 HOH A 72 372 74 HOH HOH . 
F 4 HOH A 73 373 75 HOH HOH . 
F 4 HOH A 74 374 76 HOH HOH . 
F 4 HOH A 75 375 77 HOH HOH . 
F 4 HOH A 76 376 78 HOH HOH . 
F 4 HOH A 77 377 79 HOH HOH . 
F 4 HOH A 78 378 80 HOH HOH . 
F 4 HOH A 79 379 81 HOH HOH . 
F 4 HOH A 80 380 82 HOH HOH . 
F 4 HOH A 81 381 83 HOH HOH . 
F 4 HOH A 82 382 84 HOH HOH . 
F 4 HOH A 83 383 85 HOH HOH . 
F 4 HOH A 84 384 86 HOH HOH . 
F 4 HOH A 85 385 87 HOH HOH . 
F 4 HOH A 86 386 88 HOH HOH . 
F 4 HOH A 87 387 89 HOH HOH . 
F 4 HOH A 88 388 90 HOH HOH . 
F 4 HOH A 89 389 91 HOH HOH . 
F 4 HOH A 90 390 92 HOH HOH . 
F 4 HOH A 91 391 94 HOH HOH . 
F 4 HOH A 92 392 96 HOH HOH . 
F 4 HOH A 93 393 98 HOH HOH . 
F 4 HOH A 94 394 99 HOH HOH . 
F 4 HOH A 95 395 100 HOH HOH . 
F 4 HOH A 96 396 101 HOH HOH . 
F 4 HOH A 97 397 104 HOH HOH . 
F 4 HOH A 98 398 109 HOH HOH . 
F 4 HOH A 99 399 111 HOH HOH . 
F 4 HOH A 100 400 112 HOH HOH . 
F 4 HOH A 101 401 113 HOH HOH . 
F 4 HOH A 102 402 114 HOH HOH . 
F 4 HOH A 103 403 115 HOH HOH . 
F 4 HOH A 104 404 116 HOH HOH . 
F 4 HOH A 105 405 117 HOH HOH . 
F 4 HOH A 106 406 118 HOH HOH . 
F 4 HOH A 107 407 119 HOH HOH . 
F 4 HOH A 108 408 120 HOH HOH . 
F 4 HOH A 109 409 121 HOH HOH . 
F 4 HOH A 110 410 122 HOH HOH . 
F 4 HOH A 111 411 123 HOH HOH . 
F 4 HOH A 112 412 124 HOH HOH . 
F 4 HOH A 113 413 125 HOH HOH . 
F 4 HOH A 114 414 126 HOH HOH . 
F 4 HOH A 115 415 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -0.645 4.126 16.347 1 8.73 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . . . B 2 -4.158 0.953 15.278 1 10.05 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . . . B 2 -0.857 -2.285 13.923 1 7.81 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . . . B 2 2.647 0.859 14.987 1 9.73 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . . . B 2 -1.904 3.537 16.162 1 10.01 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . . . B 2 -3.135 4.198 16.461 1 9.38 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . . . B 2 -4.135 3.335 16.181 1 9.1 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . . . B 2 -3.49 2.108 15.685 1 9.8 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . . . B 2 -5.644 3.511 16.319 1 8.89 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . . . B 2 -3.297 5.636 17.004 1 9.5 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . . . B 2 -3.756 6.542 15.833 1 11.01 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . . . B 2 -2.838 6.641 14.629 1 13.64 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . . . B 2 -1.661 7.031 14.746 1 14.54 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . . . B 2 -3.345 6.28 13.511 1 15.26 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . . . B 2 -3.6 -0.191 14.82 1 10.14 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . . . B 2 -4.308 -1.352 14.419 1 10.81 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . . . B 2 -3.41 -2.268 14.035 1 10.65 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . . . B 2 -2.07 -1.658 14.202 1 9.88 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . . . B 2 -5.841 -1.451 14.455 1 11.28 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . . . B 2 -3.626 -3.707 13.505 1 10 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . . . B 2 -4.523 -4.617 14.428 1 12.47 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . . . B 2 0.401 -1.711 14.095 1 8.06 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . . . B 2 1.63 -2.403 13.824 1 9.23 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . . . B 2 2.633 -1.519 14.122 1 9.21 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . . . B 2 1.987 -0.301 14.572 1 8.48 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . . . B 2 1.708 -3.834 13.314 1 10.57 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . . . B 2 4.168 -1.639 14.054 1 13.07 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . . . B 2 4.771 -2.998 14.462 1 16.43 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . . . B 2 2.077 2 15.436 1 9.2 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . . . B 2 2.765 3.228 15.907 1 10.24 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . . . B 2 1.872 4.139 16.299 1 11.38 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . . . B 2 0.549 3.502 16.066 1 8.31 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . . . B 2 4.334 3.317 15.915 1 12.33 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . . . B 2 2.155 5.483 16.86 1 12.86 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . . . B 2 2.296 5.277 18.405 1 16.71 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . . . B 2 2.454 6.481 19.295 1 20.3 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . . . B 2 1.486 7.113 19.77 1 23.03 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . . . B 2 3.655 6.787 19.52 1 22.55 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . . . B 2 -2.104 2.274 15.68 1 9.64 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . . . B 2 -2.203 -0.371 14.683 1 9.04 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . . . B 2 0.624 -0.46 14.545 1 8.98 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . . . B 2 0.71 2.247 15.565 1 9.76 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . . . B 2 -0.743 0.937 15.093 1 9.62 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#