data_4DC9
#
_model_server_result.job_id            C5llDy2cdwG6MZwW1KOZ8w 
_model_server_result.datetime_utc      '2025-06-24 04:53:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dc9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    4DC9 
#
_exptl.entry_id    4DC9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          138.05 
_cell.angle_gamma         90 
_cell.entry_id            4DC9 
_cell.length_a            186.351 
_cell.length_b            118.577 
_cell.length_c            141.731 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DC9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA dodecameric 12 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 237 n n 
N O2 NO3 sing 238 n n 
N O3 NO3 sing 239 n n 
#
_atom_sites.entry_id                     4DC9 
_atom_sites.fract_transf_matrix[1][1]    0.005366 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00597 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NO3 A 1 401 1007 NO3 NO3 . 
H 2 NO3 A 1 402 1013 NO3 NO3 . 
I 2 NO3 B 1 401 1008 NO3 NO3 . 
J 2 NO3 B 1 402 1014 NO3 NO3 . 
K 2 NO3 C 1 401 1009 NO3 NO3 . 
L 2 NO3 C 1 402 1015 NO3 NO3 . 
M 2 NO3 D 1 401 1010 NO3 NO3 . 
N 2 NO3 D 1 402 1016 NO3 NO3 . 
O 2 NO3 E 1 401 1011 NO3 NO3 . 
P 2 NO3 E 1 402 1017 NO3 NO3 . 
Q 2 NO3 F 1 401 1012 NO3 NO3 . 
R 2 NO3 F 1 402 1018 NO3 NO3 . 
S 3 HOH A 1 701 701 HOH HOH . 
S 3 HOH A 2 702 702 HOH HOH . 
S 3 HOH A 3 703 704 HOH HOH . 
S 3 HOH A 4 704 708 HOH HOH . 
S 3 HOH A 5 705 712 HOH HOH . 
S 3 HOH A 6 706 714 HOH HOH . 
S 3 HOH A 7 707 716 HOH HOH . 
S 3 HOH A 8 708 720 HOH HOH . 
S 3 HOH A 9 709 721 HOH HOH . 
S 3 HOH A 10 710 723 HOH HOH . 
S 3 HOH A 11 711 725 HOH HOH . 
S 3 HOH A 12 712 726 HOH HOH . 
S 3 HOH A 13 713 748 HOH HOH . 
T 3 HOH B 1 501 713 HOH HOH . 
T 3 HOH B 2 502 718 HOH HOH . 
T 3 HOH B 3 503 722 HOH HOH . 
T 3 HOH B 4 504 730 HOH HOH . 
T 3 HOH B 5 505 733 HOH HOH . 
T 3 HOH B 6 506 737 HOH HOH . 
T 3 HOH B 7 507 739 HOH HOH . 
T 3 HOH B 8 508 741 HOH HOH . 
T 3 HOH B 9 509 746 HOH HOH . 
T 3 HOH B 10 510 747 HOH HOH . 
U 3 HOH C 1 501 740 HOH HOH . 
U 3 HOH C 2 502 744 HOH HOH . 
U 3 HOH C 3 503 753 HOH HOH . 
U 3 HOH C 4 504 757 HOH HOH . 
U 3 HOH C 5 505 758 HOH HOH . 
V 3 HOH D 1 501 710 HOH HOH . 
V 3 HOH D 2 502 711 HOH HOH . 
V 3 HOH D 3 503 715 HOH HOH . 
V 3 HOH D 4 504 724 HOH HOH . 
V 3 HOH D 5 505 734 HOH HOH . 
V 3 HOH D 6 506 735 HOH HOH . 
V 3 HOH D 7 507 742 HOH HOH . 
V 3 HOH D 8 508 743 HOH HOH . 
V 3 HOH D 9 509 752 HOH HOH . 
V 3 HOH D 10 510 762 HOH HOH . 
W 3 HOH E 1 501 705 HOH HOH . 
W 3 HOH E 2 502 706 HOH HOH . 
W 3 HOH E 3 503 707 HOH HOH . 
W 3 HOH E 4 504 727 HOH HOH . 
W 3 HOH E 5 505 728 HOH HOH . 
W 3 HOH E 6 506 731 HOH HOH . 
W 3 HOH E 7 507 738 HOH HOH . 
W 3 HOH E 8 508 750 HOH HOH . 
W 3 HOH E 9 509 754 HOH HOH . 
W 3 HOH E 10 510 755 HOH HOH . 
W 3 HOH E 11 511 756 HOH HOH . 
X 3 HOH F 1 501 703 HOH HOH . 
X 3 HOH F 2 502 709 HOH HOH . 
X 3 HOH F 3 503 717 HOH HOH . 
X 3 HOH F 4 504 719 HOH HOH . 
X 3 HOH F 5 505 729 HOH HOH . 
X 3 HOH F 6 506 732 HOH HOH . 
X 3 HOH F 7 507 736 HOH HOH . 
X 3 HOH F 8 508 745 HOH HOH . 
X 3 HOH F 9 509 749 HOH HOH . 
X 3 HOH F 10 510 751 HOH HOH . 
X 3 HOH F 11 511 759 HOH HOH . 
X 3 HOH F 12 512 760 HOH HOH . 
X 3 HOH F 13 513 761 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . M 2 -24.947 39.027 29.76 1 46.26 ? N NO3 401 D 1 
HETATM 2 O O1 NO3 . . . M 2 -23.93 39.403 30.351 1 50.16 ? O1 NO3 401 D 1 
HETATM 3 O O2 NO3 . . . M 2 -25.536 39.846 28.772 1 43.18 ? O2 NO3 401 D 1 
HETATM 4 O O3 NO3 . . . M 2 -25.526 37.781 30.092 1 38.22 ? O3 NO3 401 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
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