data_4DCB
#
_model_server_result.job_id            XbAKJtoKfw9x2FQm16sX3w 
_model_server_result.datetime_utc      '2024-12-27 09:03:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dcb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4DCB 
#
_exptl.entry_id    4DCB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DCB 
_cell.length_a            52.377 
_cell.length_b            63.105 
_cell.length_c            201.225 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DCB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             2 
_struct_conn.ptnr1_auth_asym_id             F 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              558 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             10 
_struct_conn.ptnr2_auth_asym_id             F 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              566 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.023 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 312 n n 
C1 H1C1 MRD sing 313 n n 
C1 H1C2 MRD sing 314 n n 
C1 H1C3 MRD sing 315 n n 
C2 O2 MRD sing 316 n n 
C2 CM MRD sing 317 n n 
C2 C3 MRD sing 318 n n 
O2 H2 MRD sing 319 n n 
CM HMC1 MRD sing 320 n n 
CM HMC2 MRD sing 321 n n 
CM HMC3 MRD sing 322 n n 
C3 C4 MRD sing 323 n n 
C3 H3C1 MRD sing 324 n n 
C3 H3C2 MRD sing 325 n n 
C4 O4 MRD sing 326 n n 
C4 C5 MRD sing 327 n n 
C4 H4 MRD sing 328 n n 
O4 HA MRD sing 329 n n 
C5 H5C1 MRD sing 330 n n 
C5 H5C2 MRD sing 331 n n 
C5 H5C3 MRD sing 332 n n 
#
_atom_sites.entry_id                     4DCB 
_atom_sites.fract_transf_matrix[1][1]    0.019092 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MRD A 1 401 1 MRD MPD . 
D 3 MRD A 1 402 2 MRD MPD . 
E 3 MRD A 1 403 3 MRD MPD . 
F 3 MRD A 1 404 4 MRD MPD . 
G 4 MPD A 1 405 5 MPD MPD . 
H 4 MPD A 1 406 6 MPD MPD . 
I 5 C8E A 1 407 1 C8E C8E . 
J 6 PO4 A 1 408 1 PO4 PO4 . 
K 7 HOH A 1 501 3 HOH HOH . 
K 7 HOH A 2 502 4 HOH HOH . 
K 7 HOH A 3 503 5 HOH HOH . 
K 7 HOH A 4 504 7 HOH HOH . 
K 7 HOH A 5 505 8 HOH HOH . 
K 7 HOH A 6 506 10 HOH HOH . 
K 7 HOH A 7 507 11 HOH HOH . 
K 7 HOH A 8 508 14 HOH HOH . 
K 7 HOH A 9 509 15 HOH HOH . 
K 7 HOH A 10 510 16 HOH HOH . 
K 7 HOH A 11 511 17 HOH HOH . 
K 7 HOH A 12 512 18 HOH HOH . 
K 7 HOH A 13 513 20 HOH HOH . 
K 7 HOH A 14 514 21 HOH HOH . 
K 7 HOH A 15 515 23 HOH HOH . 
K 7 HOH A 16 516 24 HOH HOH . 
K 7 HOH A 17 517 26 HOH HOH . 
K 7 HOH A 18 518 27 HOH HOH . 
K 7 HOH A 19 519 28 HOH HOH . 
K 7 HOH A 20 520 30 HOH HOH . 
K 7 HOH A 21 521 32 HOH HOH . 
K 7 HOH A 22 522 33 HOH HOH . 
K 7 HOH A 23 523 35 HOH HOH . 
K 7 HOH A 24 524 36 HOH HOH . 
K 7 HOH A 25 525 38 HOH HOH . 
K 7 HOH A 26 526 39 HOH HOH . 
K 7 HOH A 27 527 40 HOH HOH . 
K 7 HOH A 28 528 42 HOH HOH . 
K 7 HOH A 29 529 43 HOH HOH . 
K 7 HOH A 30 530 44 HOH HOH . 
K 7 HOH A 31 531 45 HOH HOH . 
K 7 HOH A 32 532 46 HOH HOH . 
K 7 HOH A 33 533 47 HOH HOH . 
K 7 HOH A 34 534 48 HOH HOH . 
K 7 HOH A 35 535 52 HOH HOH . 
K 7 HOH A 36 536 53 HOH HOH . 
K 7 HOH A 37 537 55 HOH HOH . 
K 7 HOH A 38 538 57 HOH HOH . 
K 7 HOH A 39 539 58 HOH HOH . 
K 7 HOH A 40 540 59 HOH HOH . 
K 7 HOH A 41 541 60 HOH HOH . 
K 7 HOH A 42 542 62 HOH HOH . 
K 7 HOH A 43 543 63 HOH HOH . 
K 7 HOH A 44 544 65 HOH HOH . 
K 7 HOH A 45 545 67 HOH HOH . 
K 7 HOH A 46 546 68 HOH HOH . 
K 7 HOH A 47 547 69 HOH HOH . 
K 7 HOH A 48 548 70 HOH HOH . 
K 7 HOH A 49 549 72 HOH HOH . 
K 7 HOH A 50 550 73 HOH HOH . 
K 7 HOH A 51 551 74 HOH HOH . 
K 7 HOH A 52 552 75 HOH HOH . 
K 7 HOH A 53 553 77 HOH HOH . 
K 7 HOH A 54 554 79 HOH HOH . 
K 7 HOH A 55 555 80 HOH HOH . 
K 7 HOH A 56 556 82 HOH HOH . 
K 7 HOH A 57 557 83 HOH HOH . 
K 7 HOH A 58 558 84 HOH HOH . 
K 7 HOH A 59 559 85 HOH HOH . 
K 7 HOH A 60 560 88 HOH HOH . 
K 7 HOH A 61 561 89 HOH HOH . 
K 7 HOH A 62 562 92 HOH HOH . 
K 7 HOH A 63 563 93 HOH HOH . 
K 7 HOH A 64 564 95 HOH HOH . 
K 7 HOH A 65 565 96 HOH HOH . 
K 7 HOH A 66 566 97 HOH HOH . 
K 7 HOH A 67 567 98 HOH HOH . 
K 7 HOH A 68 568 99 HOH HOH . 
K 7 HOH A 69 569 100 HOH HOH . 
K 7 HOH A 70 570 101 HOH HOH . 
K 7 HOH A 71 571 104 HOH HOH . 
K 7 HOH A 72 572 111 HOH HOH . 
K 7 HOH A 73 573 112 HOH HOH . 
K 7 HOH A 74 574 114 HOH HOH . 
K 7 HOH A 75 575 115 HOH HOH . 
K 7 HOH A 76 576 118 HOH HOH . 
K 7 HOH A 77 577 119 HOH HOH . 
K 7 HOH A 78 578 121 HOH HOH . 
K 7 HOH A 79 579 122 HOH HOH . 
K 7 HOH A 80 580 127 HOH HOH . 
K 7 HOH A 81 581 128 HOH HOH . 
K 7 HOH A 82 582 130 HOH HOH . 
K 7 HOH A 83 583 131 HOH HOH . 
K 7 HOH A 84 584 132 HOH HOH . 
K 7 HOH A 85 585 133 HOH HOH . 
K 7 HOH A 86 586 134 HOH HOH . 
K 7 HOH A 87 587 135 HOH HOH . 
K 7 HOH A 88 588 136 HOH HOH . 
K 7 HOH A 89 589 137 HOH HOH . 
K 7 HOH A 90 590 138 HOH HOH . 
K 7 HOH A 91 591 139 HOH HOH . 
K 7 HOH A 92 592 140 HOH HOH . 
K 7 HOH A 93 593 141 HOH HOH . 
K 7 HOH A 94 594 143 HOH HOH . 
K 7 HOH A 95 595 144 HOH HOH . 
K 7 HOH A 96 596 145 HOH HOH . 
K 7 HOH A 97 597 146 HOH HOH . 
K 7 HOH A 98 598 147 HOH HOH . 
K 7 HOH A 99 599 148 HOH HOH . 
K 7 HOH A 100 600 149 HOH HOH . 
K 7 HOH A 101 601 150 HOH HOH . 
K 7 HOH A 102 602 152 HOH HOH . 
K 7 HOH A 103 603 153 HOH HOH . 
K 7 HOH A 104 604 154 HOH HOH . 
K 7 HOH A 105 605 155 HOH HOH . 
K 7 HOH A 106 606 156 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . C 3 -6.269 -5.197 38.382 1 41.88 ? C1 MRD 401 A 1 
HETATM 2 C C2 MRD . . . C 3 -7.792 -5.07 38.357 1 42.3 ? C2 MRD 401 A 1 
HETATM 3 O O2 MRD . . . C 3 -8.393 -6.335 38.73 1 48.81 ? O2 MRD 401 A 1 
HETATM 4 C CM MRD . . . C 3 -8.258 -4.084 39.405 1 41.82 ? CM MRD 401 A 1 
HETATM 5 C C3 MRD . . . C 3 -8.287 -4.621 36.998 1 38.72 ? C3 MRD 401 A 1 
HETATM 6 C C4 MRD . . . C 3 -9.407 -5.51 36.508 1 43.99 ? C4 MRD 401 A 1 
HETATM 7 O O4 MRD . . . C 3 -9.585 -5.34 35.117 1 50.41 ? O4 MRD 401 A 1 
HETATM 8 C C5 MRD . . . C 3 -10.727 -5.153 37.199 1 34.12 ? C5 MRD 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#