data_4DCD
#
_model_server_result.job_id            mTPjyTrS4IcBUcTgS370EA 
_model_server_result.datetime_utc      '2024-11-24 09:38:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dcd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    4DCD 
#
_exptl.entry_id    4DCD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              485.551 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DCD 
_cell.length_a            56.083 
_cell.length_b            58.607 
_cell.length_c            107.991 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DCD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 154 A CYS 147 1_555 C C21 K36 . A K36 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
covale ? covale2 B C2 DTT . A DTT 201 1_555 B C2 DTT . A DTT 201 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? 
#
_chem_comp.formula           'C21 H31 N3 O8 S' 
_chem_comp.formula_weight    485.551 
_chem_comp.id                K36 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     GC376 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C21 K36 sing 190 n n 
C21 C20 K36 sing 191 n n 
C20 C24 K36 sing 192 n n 
C20 N19 K36 sing 193 n n 
C24 C25 K36 sing 194 n n 
C26 C27 K36 sing 195 n n 
C26 C25 K36 sing 196 n n 
C27 N28 K36 sing 197 n n 
O18 C17 K36 doub 198 n n 
N19 C17 K36 sing 199 n n 
C25 C29 K36 sing 200 n n 
C29 N28 K36 sing 201 n n 
C29 O30 K36 doub 202 n n 
C17 C12 K36 sing 203 n n 
C13 C12 K36 sing 204 n n 
C13 C14 K36 sing 205 n n 
C12 N11 K36 sing 206 n n 
C15 C14 K36 sing 207 n n 
C14 C16 K36 sing 208 n n 
N11 C9 K36 sing 209 n n 
O10 C9 K36 doub 210 n n 
C9 O8 K36 sing 211 n n 
O8 C7 K36 sing 212 n n 
C7 H1 K36 sing 213 n n 
C7 H2 K36 sing 214 n n 
N11 H4 K36 sing 215 n n 
C12 H5 K36 sing 216 n n 
C13 H6 K36 sing 217 n n 
C13 H7 K36 sing 218 n n 
C14 H8 K36 sing 219 n n 
C15 H9 K36 sing 220 n n 
C15 H10 K36 sing 221 n n 
C15 H11 K36 sing 222 n n 
C16 H12 K36 sing 223 n n 
C16 H13 K36 sing 224 n n 
C16 H14 K36 sing 225 n n 
N19 H15 K36 sing 226 n n 
C20 H16 K36 sing 227 n n 
C21 H17 K36 sing 228 n n 
O22 H19 K36 sing 229 n n 
C24 H20 K36 sing 230 n n 
C24 H21 K36 sing 231 n n 
C25 H22 K36 sing 232 n n 
C26 H23 K36 sing 233 n n 
C26 H24 K36 sing 234 n n 
C27 H25 K36 sing 235 n n 
C27 H26 K36 sing 236 n n 
N28 H27 K36 sing 237 n n 
C7 C1 K36 sing 238 n n 
C1 C2 K36 sing 239 n y 
C2 C3 K36 doub 240 n y 
C3 C4 K36 sing 241 n y 
C4 C5 K36 doub 242 n y 
C5 C6 K36 sing 243 n y 
C6 C1 K36 doub 244 n y 
C21 S1 K36 sing 245 n n 
S1 O1 K36 doub 246 n n 
S1 O2 K36 doub 247 n n 
S1 O3 K36 sing 248 n n 
C2 H3 K36 sing 249 n n 
C3 H18 K36 sing 250 n n 
C4 H28 K36 sing 251 n n 
C5 H29 K36 sing 252 n n 
C6 H30 K36 sing 253 n n 
O3 H31 K36 sing 254 n n 
#
_atom_sites.entry_id                     4DCD 
_atom_sites.fract_transf_matrix[1][1]    0.017831 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00926 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DTT A 1 201 1 DTT DTT . 
C 3 K36 A 1 202 1 K36 K36 . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 4 SO4 A 1 204 2 SO4 SO4 . 
F 5 HOH A 1 301 1 HOH HOH . 
F 5 HOH A 2 302 2 HOH HOH . 
F 5 HOH A 3 303 3 HOH HOH . 
F 5 HOH A 4 304 4 HOH HOH . 
F 5 HOH A 5 305 5 HOH HOH . 
F 5 HOH A 6 306 6 HOH HOH . 
F 5 HOH A 7 307 7 HOH HOH . 
F 5 HOH A 8 308 8 HOH HOH . 
F 5 HOH A 9 309 9 HOH HOH . 
F 5 HOH A 10 310 10 HOH HOH . 
F 5 HOH A 11 311 11 HOH HOH . 
F 5 HOH A 12 312 12 HOH HOH . 
F 5 HOH A 13 313 13 HOH HOH . 
F 5 HOH A 14 314 14 HOH HOH . 
F 5 HOH A 15 315 15 HOH HOH . 
F 5 HOH A 16 316 16 HOH HOH . 
F 5 HOH A 17 317 17 HOH HOH . 
F 5 HOH A 18 318 18 HOH HOH . 
F 5 HOH A 19 319 19 HOH HOH . 
F 5 HOH A 20 320 20 HOH HOH . 
F 5 HOH A 21 321 21 HOH HOH . 
F 5 HOH A 22 322 22 HOH HOH . 
F 5 HOH A 23 323 23 HOH HOH . 
F 5 HOH A 24 324 24 HOH HOH . 
F 5 HOH A 25 325 25 HOH HOH . 
F 5 HOH A 26 326 26 HOH HOH . 
F 5 HOH A 27 327 27 HOH HOH . 
F 5 HOH A 28 328 28 HOH HOH . 
F 5 HOH A 29 329 29 HOH HOH . 
F 5 HOH A 30 330 30 HOH HOH . 
F 5 HOH A 31 331 31 HOH HOH . 
F 5 HOH A 32 332 32 HOH HOH . 
F 5 HOH A 33 333 33 HOH HOH . 
F 5 HOH A 34 334 34 HOH HOH . 
F 5 HOH A 35 335 35 HOH HOH . 
F 5 HOH A 36 336 36 HOH HOH . 
F 5 HOH A 37 337 37 HOH HOH . 
F 5 HOH A 38 338 38 HOH HOH . 
F 5 HOH A 39 339 39 HOH HOH . 
F 5 HOH A 40 340 40 HOH HOH . 
F 5 HOH A 41 341 41 HOH HOH . 
F 5 HOH A 42 342 42 HOH HOH . 
F 5 HOH A 43 343 43 HOH HOH . 
F 5 HOH A 44 344 44 HOH HOH . 
F 5 HOH A 45 345 45 HOH HOH . 
F 5 HOH A 46 346 46 HOH HOH . 
F 5 HOH A 47 347 47 HOH HOH . 
F 5 HOH A 48 348 48 HOH HOH . 
F 5 HOH A 49 349 49 HOH HOH . 
F 5 HOH A 50 350 50 HOH HOH . 
F 5 HOH A 51 351 51 HOH HOH . 
F 5 HOH A 52 352 52 HOH HOH . 
F 5 HOH A 53 353 53 HOH HOH . 
F 5 HOH A 54 354 54 HOH HOH . 
F 5 HOH A 55 355 55 HOH HOH . 
F 5 HOH A 56 356 56 HOH HOH . 
F 5 HOH A 57 357 57 HOH HOH . 
F 5 HOH A 58 358 58 HOH HOH . 
F 5 HOH A 59 359 59 HOH HOH . 
F 5 HOH A 60 360 60 HOH HOH . 
F 5 HOH A 61 361 61 HOH HOH . 
F 5 HOH A 62 362 62 HOH HOH . 
F 5 HOH A 63 363 63 HOH HOH . 
F 5 HOH A 64 364 64 HOH HOH . 
F 5 HOH A 65 365 65 HOH HOH . 
F 5 HOH A 66 366 66 HOH HOH . 
F 5 HOH A 67 367 67 HOH HOH . 
F 5 HOH A 68 368 68 HOH HOH . 
F 5 HOH A 69 369 69 HOH HOH . 
F 5 HOH A 70 370 70 HOH HOH . 
F 5 HOH A 71 371 71 HOH HOH . 
F 5 HOH A 72 372 72 HOH HOH . 
F 5 HOH A 73 373 73 HOH HOH . 
F 5 HOH A 74 374 74 HOH HOH . 
F 5 HOH A 75 375 75 HOH HOH . 
F 5 HOH A 76 376 76 HOH HOH . 
F 5 HOH A 77 377 77 HOH HOH . 
F 5 HOH A 78 378 78 HOH HOH . 
F 5 HOH A 79 379 79 HOH HOH . 
F 5 HOH A 80 380 80 HOH HOH . 
F 5 HOH A 81 381 81 HOH HOH . 
F 5 HOH A 82 382 82 HOH HOH . 
F 5 HOH A 83 383 83 HOH HOH . 
F 5 HOH A 84 384 84 HOH HOH . 
F 5 HOH A 85 385 85 HOH HOH . 
F 5 HOH A 86 386 86 HOH HOH . 
F 5 HOH A 87 387 87 HOH HOH . 
F 5 HOH A 88 388 88 HOH HOH . 
F 5 HOH A 89 389 89 HOH HOH . 
F 5 HOH A 90 390 90 HOH HOH . 
F 5 HOH A 91 391 91 HOH HOH . 
F 5 HOH A 92 392 92 HOH HOH . 
F 5 HOH A 93 393 93 HOH HOH . 
F 5 HOH A 94 394 94 HOH HOH . 
F 5 HOH A 95 395 95 HOH HOH . 
F 5 HOH A 96 396 96 HOH HOH . 
F 5 HOH A 97 397 97 HOH HOH . 
F 5 HOH A 98 398 98 HOH HOH . 
F 5 HOH A 99 399 99 HOH HOH . 
F 5 HOH A 100 400 100 HOH HOH . 
F 5 HOH A 101 401 101 HOH HOH . 
F 5 HOH A 102 402 102 HOH HOH . 
F 5 HOH A 103 403 103 HOH HOH . 
F 5 HOH A 104 404 104 HOH HOH . 
F 5 HOH A 105 405 105 HOH HOH . 
F 5 HOH A 106 406 106 HOH HOH . 
F 5 HOH A 107 407 107 HOH HOH . 
F 5 HOH A 108 408 108 HOH HOH . 
F 5 HOH A 109 409 109 HOH HOH . 
F 5 HOH A 110 410 110 HOH HOH . 
F 5 HOH A 111 411 111 HOH HOH . 
F 5 HOH A 112 412 112 HOH HOH . 
F 5 HOH A 113 413 113 HOH HOH . 
F 5 HOH A 114 414 114 HOH HOH . 
F 5 HOH A 115 415 115 HOH HOH . 
F 5 HOH A 116 416 116 HOH HOH . 
F 5 HOH A 117 417 117 HOH HOH . 
F 5 HOH A 118 418 118 HOH HOH . 
F 5 HOH A 119 419 119 HOH HOH . 
F 5 HOH A 120 420 120 HOH HOH . 
F 5 HOH A 121 421 121 HOH HOH . 
F 5 HOH A 122 422 122 HOH HOH . 
F 5 HOH A 123 423 123 HOH HOH . 
F 5 HOH A 124 424 124 HOH HOH . 
F 5 HOH A 125 425 125 HOH HOH . 
F 5 HOH A 126 426 126 HOH HOH . 
F 5 HOH A 127 427 127 HOH HOH . 
F 5 HOH A 128 428 128 HOH HOH . 
F 5 HOH A 129 429 129 HOH HOH . 
F 5 HOH A 130 430 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 K36 . . . C 3 8.358 8.93 32.833 1 29.57 ? C7 K36 202 A 1 
HETATM 2 O O8 K36 . . . C 3 9.516 9.611 32.329 1 27.45 ? O8 K36 202 A 1 
HETATM 3 C C9 K36 . . . C 3 9.744 9.631 30.903 1 21.78 ? C9 K36 202 A 1 
HETATM 4 O O10 K36 . . . C 3 8.882 9.26 30.112 1 20.1 ? O10 K36 202 A 1 
HETATM 5 C C1 K36 . . . C 3 7.363 9.955 33.324 1 30.71 ? C1 K36 202 A 1 
HETATM 6 C C2 K36 . . . C 3 6.739 10.768 32.397 1 25.76 ? C2 K36 202 A 1 
HETATM 7 C C3 K36 . . . C 3 5.807 11.71 32.818 1 25.55 ? C3 K36 202 A 1 
HETATM 8 C C4 K36 . . . C 3 5.533 11.848 34.174 1 30.93 ? C4 K36 202 A 1 
HETATM 9 C C5 K36 . . . C 3 6.171 11.045 35.107 1 32.73 ? C5 K36 202 A 1 
HETATM 10 C C6 K36 . . . C 3 7.09 10.089 34.682 1 33.09 ? C6 K36 202 A 1 
HETATM 11 N N11 K36 . . . C 3 10.96 10.103 30.508 1 18.64 ? N11 K36 202 A 1 
HETATM 12 C C12 K36 . . . C 3 11.558 9.831 29.204 1 16.74 ? C12 K36 202 A 1 
HETATM 13 C C17 K36 . . . C 3 11.412 8.474 28.574 1 19.19 ? C17 K36 202 A 1 
HETATM 14 O O18 K36 . . . C 3 11.751 7.495 29.232 1 22.15 ? O18 K36 202 A 1 
HETATM 15 C C13 K36 . . . C 3 12.866 10.558 28.882 1 17.68 ? C13 K36 202 A 1 
HETATM 16 C C14 K36 . . . C 3 12.915 11.988 29.413 1 18.03 ? C14 K36 202 A 1 
HETATM 17 C C15 K36 . . . C 3 14.359 12.421 29.624 1 20.27 ? C15 K36 202 A 1 
HETATM 18 C C16 K36 . . . C 3 12.204 12.939 28.473 1 18.93 ? C16 K36 202 A 1 
HETATM 19 N N19 K36 . . . C 3 10.99 8.364 27.277 1 19.34 ? N19 K36 202 A 1 
HETATM 20 C C20 K36 . . . C 3 10.825 7.039 26.64 1 15.88 ? C20 K36 202 A 1 
HETATM 21 C C21 K36 . . . C 3 11.455 6.985 25.252 1 17.48 ? C21 K36 202 A 1 
HETATM 22 O O22 K36 . . . C 3 12.868 7.164 25.348 1 19.25 ? O22 K36 202 A 1 
HETATM 23 C C24 K36 . . . C 3 9.338 6.74 26.479 1 14.06 ? C24 K36 202 A 1 
HETATM 24 C C25 K36 . . . C 3 8.637 6.63 27.809 1 14.56 ? C25 K36 202 A 1 
HETATM 25 C C26 K36 . . . C 3 9.152 5.527 28.722 1 14.66 ? C26 K36 202 A 1 
HETATM 26 C C27 K36 . . . C 3 7.913 5.026 29.452 1 16.75 ? C27 K36 202 A 1 
HETATM 27 N N28 K36 . . . C 3 6.792 5.327 28.558 1 19.27 ? N28 K36 202 A 1 
HETATM 28 C C29 K36 . . . C 3 7.224 6.217 27.628 1 15.98 ? C29 K36 202 A 1 
HETATM 29 O O30 K36 . . . C 3 6.486 6.588 26.723 1 17.08 ? O30 K36 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#