data_4DCF # _model_server_result.job_id 56wPXFbM58TZdRydvNoxqg _model_server_result.datetime_utc '2025-03-26 23:56:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4DCF # _exptl.entry_id 4DCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.66 _cell.angle_gamma 90 _cell.entry_id 4DCF _cell.length_a 59.4 _cell.length_b 128.886 _cell.length_c 67.008 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf4 A SG CYS 49 A CYS 49 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf5 A SG CYS 50 A CYS 50 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 A SG CYS 75 A CYS 75 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 B SG CYS 26 B CYS 26 1_555 B SG CYS 116 B CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf9 B SG CYS 43 B CYS 43 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf10 B SG CYS 49 B CYS 49 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf11 B SG CYS 50 B CYS 50 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf12 B SG CYS 75 B CYS 75 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf13 C SG CYS 26 C CYS 26 1_555 C SG CYS 116 C CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf14 C SG CYS 28 C CYS 28 1_555 C SG CYS 44 C CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf15 C SG CYS 43 C CYS 43 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf16 C SG CYS 57 C CYS 57 1_555 C SG CYS 81 C CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf17 C SG CYS 75 C CYS 75 1_555 C SG CYS 86 C CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf18 D SG CYS 26 D CYS 26 1_555 D SG CYS 116 D CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf19 D SG CYS 28 D CYS 28 1_555 D SG CYS 44 D CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? disulf ? disulf20 D SG CYS 43 D CYS 43 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf21 D SG CYS 49 D CYS 49 1_555 D SG CYS 122 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf22 D SG CYS 50 D CYS 50 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? disulf ? disulf23 D SG CYS 57 D CYS 57 1_555 D SG CYS 81 D CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? disulf ? disulf24 D SG CYS 75 D CYS 75 1_555 D SG CYS 86 D CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 4DCF _atom_sites.fract_transf_matrix[1][1] 0.016835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PG4 A 1 201 1 PG4 DRG . F 2 PG4 B 1 201 1 PG4 DRG . G 3 HOH A 1 301 2 HOH HOH . G 3 HOH A 2 302 3 HOH HOH . G 3 HOH A 3 303 7 HOH HOH . G 3 HOH A 4 304 8 HOH HOH . G 3 HOH A 5 305 10 HOH HOH . G 3 HOH A 6 306 12 HOH HOH . G 3 HOH A 7 307 14 HOH HOH . G 3 HOH A 8 308 15 HOH HOH . G 3 HOH A 9 309 17 HOH HOH . G 3 HOH A 10 310 28 HOH HOH . G 3 HOH A 11 311 32 HOH HOH . G 3 HOH A 12 312 39 HOH HOH . G 3 HOH A 13 313 42 HOH HOH . G 3 HOH A 14 314 48 HOH HOH . G 3 HOH A 15 315 49 HOH HOH . G 3 HOH A 16 316 50 HOH HOH . G 3 HOH A 17 317 54 HOH HOH . G 3 HOH A 18 318 57 HOH HOH . G 3 HOH A 19 319 63 HOH HOH . G 3 HOH A 20 320 70 HOH HOH . G 3 HOH A 21 321 72 HOH HOH . G 3 HOH A 22 322 73 HOH HOH . G 3 HOH A 23 323 75 HOH HOH . G 3 HOH A 24 324 77 HOH HOH . G 3 HOH A 25 325 78 HOH HOH . G 3 HOH A 26 326 79 HOH HOH . G 3 HOH A 27 327 81 HOH HOH . G 3 HOH A 28 328 85 HOH HOH . G 3 HOH A 29 329 86 HOH HOH . G 3 HOH A 30 330 87 HOH HOH . G 3 HOH A 31 331 91 HOH HOH . G 3 HOH A 32 332 93 HOH HOH . G 3 HOH A 33 333 94 HOH HOH . H 3 HOH B 1 301 5 HOH HOH . H 3 HOH B 2 302 13 HOH HOH . H 3 HOH B 3 303 18 HOH HOH . H 3 HOH B 4 304 22 HOH HOH . H 3 HOH B 5 305 25 HOH HOH . H 3 HOH B 6 306 26 HOH HOH . H 3 HOH B 7 307 33 HOH HOH . H 3 HOH B 8 308 34 HOH HOH . H 3 HOH B 9 309 40 HOH HOH . H 3 HOH B 10 310 43 HOH HOH . H 3 HOH B 11 311 46 HOH HOH . H 3 HOH B 12 312 60 HOH HOH . H 3 HOH B 13 313 71 HOH HOH . H 3 HOH B 14 314 76 HOH HOH . H 3 HOH B 15 315 80 HOH HOH . H 3 HOH B 16 316 83 HOH HOH . H 3 HOH B 17 317 92 HOH HOH . H 3 HOH B 18 318 98 HOH HOH . H 3 HOH B 19 319 99 HOH HOH . I 3 HOH C 1 201 1 HOH HOH . I 3 HOH C 2 202 9 HOH HOH . I 3 HOH C 3 203 19 HOH HOH . I 3 HOH C 4 204 23 HOH HOH . I 3 HOH C 5 205 24 HOH HOH . I 3 HOH C 6 206 30 HOH HOH . I 3 HOH C 7 207 31 HOH HOH . I 3 HOH C 8 208 35 HOH HOH . I 3 HOH C 9 209 36 HOH HOH . I 3 HOH C 10 210 38 HOH HOH . I 3 HOH C 11 211 44 HOH HOH . I 3 HOH C 12 212 45 HOH HOH . I 3 HOH C 13 213 52 HOH HOH . I 3 HOH C 14 214 53 HOH HOH . I 3 HOH C 15 215 55 HOH HOH . I 3 HOH C 16 216 56 HOH HOH . I 3 HOH C 17 217 58 HOH HOH . I 3 HOH C 18 218 59 HOH HOH . I 3 HOH C 19 219 61 HOH HOH . I 3 HOH C 20 220 64 HOH HOH . I 3 HOH C 21 221 65 HOH HOH . I 3 HOH C 22 222 66 HOH HOH . I 3 HOH C 23 223 67 HOH HOH . I 3 HOH C 24 224 68 HOH HOH . I 3 HOH C 25 225 69 HOH HOH . I 3 HOH C 26 226 74 HOH HOH . I 3 HOH C 27 227 84 HOH HOH . I 3 HOH C 28 228 89 HOH HOH . I 3 HOH C 29 229 100 HOH HOH . I 3 HOH C 30 230 101 HOH HOH . I 3 HOH C 31 231 107 HOH HOH . J 3 HOH D 1 201 4 HOH HOH . J 3 HOH D 2 202 6 HOH HOH . J 3 HOH D 3 203 20 HOH HOH . J 3 HOH D 4 204 21 HOH HOH . J 3 HOH D 5 205 27 HOH HOH . J 3 HOH D 6 206 29 HOH HOH . J 3 HOH D 7 207 37 HOH HOH . J 3 HOH D 8 208 41 HOH HOH . J 3 HOH D 9 209 47 HOH HOH . J 3 HOH D 10 210 51 HOH HOH . J 3 HOH D 11 211 62 HOH HOH . J 3 HOH D 12 212 82 HOH HOH . J 3 HOH D 13 213 88 HOH HOH . J 3 HOH D 14 214 90 HOH HOH . J 3 HOH D 15 215 102 HOH HOH . J 3 HOH D 16 216 103 HOH HOH . J 3 HOH D 17 217 104 HOH HOH . J 3 HOH D 18 218 105 HOH HOH . J 3 HOH D 19 219 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 2 8.338 -23.6 4.165 1 37.45 ? O1 PG4 201 B 1 HETATM 2 C C1 PG4 . . . F 2 8.145 -24.809 4.901 1 39.33 ? C1 PG4 201 B 1 HETATM 3 C C2 PG4 . . . F 2 7.304 -25.786 4.051 1 40.86 ? C2 PG4 201 B 1 HETATM 4 O O2 PG4 . . . F 2 7.665 -27.163 4.313 1 41.94 ? O2 PG4 201 B 1 HETATM 5 C C3 PG4 . . . F 2 7.175 -28.038 3.295 1 41.45 ? C3 PG4 201 B 1 HETATM 6 C C4 PG4 . . . F 2 8.323 -28.852 2.701 1 42.17 ? C4 PG4 201 B 1 HETATM 7 O O3 PG4 . . . F 2 7.801 -29.799 1.749 1 43.11 ? O3 PG4 201 B 1 HETATM 8 C C5 PG4 . . . F 2 8.287 -29.505 0.433 1 41.61 ? C5 PG4 201 B 1 HETATM 9 C C6 PG4 . . . F 2 7.514 -30.322 -0.608 1 41.59 ? C6 PG4 201 B 1 HETATM 10 O O4 PG4 . . . F 2 8.267 -30.324 -1.837 1 40.47 ? O4 PG4 201 B 1 HETATM 11 C C7 PG4 . . . F 2 8.46 -31.655 -2.29 1 38.11 ? C7 PG4 201 B 1 HETATM 12 C C8 PG4 . . . F 2 9.89 -31.888 -2.741 1 36.46 ? C8 PG4 201 B 1 HETATM 13 O O5 PG4 . . . F 2 10.033 -33.296 -2.881 1 36.99 ? O5 PG4 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 507 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #