data_4DCG # _model_server_result.job_id 4SOnTZNpjUv2AlfJvdTaRQ _model_server_result.datetime_utc '2024-11-24 23:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4DCG # _exptl.entry_id 4DCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.275 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-METHYLGUANOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.21 _cell.angle_gamma 90 _cell.entry_id 4DCG _cell.length_a 84.334 _cell.length_b 66.735 _cell.length_c 79.392 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H16 N5 O5 1' _chem_comp.formula_weight 298.275 _chem_comp.id MG7 _chem_comp.mon_nstd_flag . _chem_comp.name 7-METHYLGUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 MG7 sing 237 n y N9 C4 MG7 sing 238 n y N9 C1' MG7 sing 239 n n C8 N7 MG7 doub 240 n y C8 H8 MG7 sing 241 n n N7 C5 MG7 sing 242 n y N7 CN7 MG7 sing 243 n n C5 C6 MG7 sing 244 n n C5 C4 MG7 doub 245 n y C6 O6 MG7 doub 246 n n C6 N1 MG7 sing 247 n n N1 C2 MG7 sing 248 n n N1 HN1 MG7 sing 249 n n C2 N2 MG7 sing 250 n n C2 N3 MG7 doub 251 n n N2 HN21 MG7 sing 252 n n N2 HN22 MG7 sing 253 n n N3 C4 MG7 sing 254 n n O5' C5' MG7 sing 255 n n O5' HO5' MG7 sing 256 n n C5' C4' MG7 sing 257 n n C5' "H5'1" MG7 sing 258 n n C5' "H5'2" MG7 sing 259 n n C4' O4' MG7 sing 260 n n C4' C3' MG7 sing 261 n n C4' H4' MG7 sing 262 n n O4' C1' MG7 sing 263 n n C1' C2' MG7 sing 264 n n C1' H1' MG7 sing 265 n n CN7 H71 MG7 sing 266 n n CN7 H72 MG7 sing 267 n n CN7 H73 MG7 sing 268 n n C2' O2' MG7 sing 269 n n C2' C3' MG7 sing 270 n n C2' H2' MG7 sing 271 n n O2' HO2' MG7 sing 272 n n C3' O3' MG7 sing 273 n n C3' H3' MG7 sing 274 n n O3' HO3' MG7 sing 275 n n # _atom_sites.entry_id 4DCG _atom_sites.fract_transf_matrix[1][1] 0.011858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 400 400 SAH SAH . C 3 MG7 A 1 401 401 MG7 MG7 . D 4 HOH A 1 402 2 HOH HOH . D 4 HOH A 2 403 3 HOH HOH . D 4 HOH A 3 404 4 HOH HOH . D 4 HOH A 4 405 5 HOH HOH . D 4 HOH A 5 406 6 HOH HOH . D 4 HOH A 6 407 7 HOH HOH . D 4 HOH A 7 408 8 HOH HOH . D 4 HOH A 8 409 9 HOH HOH . D 4 HOH A 9 410 10 HOH HOH . D 4 HOH A 10 411 11 HOH HOH . D 4 HOH A 11 412 15 HOH HOH . D 4 HOH A 12 413 16 HOH HOH . D 4 HOH A 13 414 17 HOH HOH . D 4 HOH A 14 415 18 HOH HOH . D 4 HOH A 15 416 19 HOH HOH . D 4 HOH A 16 417 20 HOH HOH . D 4 HOH A 17 418 21 HOH HOH . D 4 HOH A 18 419 22 HOH HOH . D 4 HOH A 19 420 23 HOH HOH . D 4 HOH A 20 421 24 HOH HOH . D 4 HOH A 21 422 25 HOH HOH . D 4 HOH A 22 423 26 HOH HOH . D 4 HOH A 23 424 29 HOH HOH . D 4 HOH A 24 425 30 HOH HOH . D 4 HOH A 25 426 31 HOH HOH . D 4 HOH A 26 427 32 HOH HOH . D 4 HOH A 27 428 33 HOH HOH . D 4 HOH A 28 429 35 HOH HOH . D 4 HOH A 29 430 36 HOH HOH . D 4 HOH A 30 431 37 HOH HOH . D 4 HOH A 31 432 40 HOH HOH . D 4 HOH A 32 433 41 HOH HOH . D 4 HOH A 33 434 43 HOH HOH . D 4 HOH A 34 435 44 HOH HOH . D 4 HOH A 35 436 45 HOH HOH . D 4 HOH A 36 437 46 HOH HOH . D 4 HOH A 37 438 47 HOH HOH . D 4 HOH A 38 439 48 HOH HOH . D 4 HOH A 39 440 50 HOH HOH . D 4 HOH A 40 441 51 HOH HOH . D 4 HOH A 41 442 53 HOH HOH . D 4 HOH A 42 443 54 HOH HOH . D 4 HOH A 43 444 55 HOH HOH . D 4 HOH A 44 445 56 HOH HOH . D 4 HOH A 45 446 58 HOH HOH . D 4 HOH A 46 447 59 HOH HOH . D 4 HOH A 47 448 60 HOH HOH . D 4 HOH A 48 449 62 HOH HOH . D 4 HOH A 49 450 63 HOH HOH . D 4 HOH A 50 451 66 HOH HOH . D 4 HOH A 51 452 67 HOH HOH . D 4 HOH A 52 453 68 HOH HOH . D 4 HOH A 53 454 69 HOH HOH . D 4 HOH A 54 455 70 HOH HOH . D 4 HOH A 55 456 71 HOH HOH . D 4 HOH A 56 457 72 HOH HOH . D 4 HOH A 57 458 74 HOH HOH . D 4 HOH A 58 459 75 HOH HOH . D 4 HOH A 59 460 76 HOH HOH . D 4 HOH A 60 461 77 HOH HOH . D 4 HOH A 61 462 78 HOH HOH . D 4 HOH A 62 463 79 HOH HOH . D 4 HOH A 63 464 80 HOH HOH . D 4 HOH A 64 465 81 HOH HOH . D 4 HOH A 65 466 82 HOH HOH . D 4 HOH A 66 467 83 HOH HOH . D 4 HOH A 67 468 84 HOH HOH . D 4 HOH A 68 469 86 HOH HOH . D 4 HOH A 69 470 88 HOH HOH . D 4 HOH A 70 471 89 HOH HOH . D 4 HOH A 71 472 91 HOH HOH . D 4 HOH A 72 473 92 HOH HOH . D 4 HOH A 73 474 93 HOH HOH . D 4 HOH A 74 475 95 HOH HOH . D 4 HOH A 75 476 96 HOH HOH . D 4 HOH A 76 477 97 HOH HOH . D 4 HOH A 77 478 98 HOH HOH . D 4 HOH A 78 479 99 HOH HOH . D 4 HOH A 79 480 100 HOH HOH . D 4 HOH A 80 481 101 HOH HOH . D 4 HOH A 81 482 102 HOH HOH . D 4 HOH A 82 483 103 HOH HOH . D 4 HOH A 83 484 104 HOH HOH . D 4 HOH A 84 485 105 HOH HOH . D 4 HOH A 85 486 106 HOH HOH . D 4 HOH A 86 487 107 HOH HOH . D 4 HOH A 87 488 108 HOH HOH . D 4 HOH A 88 489 109 HOH HOH . D 4 HOH A 89 490 110 HOH HOH . D 4 HOH A 90 491 111 HOH HOH . D 4 HOH A 91 492 112 HOH HOH . D 4 HOH A 92 493 113 HOH HOH . D 4 HOH A 93 494 115 HOH HOH . D 4 HOH A 94 495 116 HOH HOH . D 4 HOH A 95 496 118 HOH HOH . D 4 HOH A 96 497 119 HOH HOH . D 4 HOH A 97 498 120 HOH HOH . D 4 HOH A 98 499 121 HOH HOH . D 4 HOH A 99 500 122 HOH HOH . D 4 HOH A 100 501 203 HOH HOH . D 4 HOH A 101 502 204 HOH HOH . D 4 HOH A 102 503 205 HOH HOH . D 4 HOH A 103 504 206 HOH HOH . D 4 HOH A 104 505 207 HOH HOH . D 4 HOH A 105 506 210 HOH HOH . D 4 HOH A 106 507 211 HOH HOH . D 4 HOH A 107 508 214 HOH HOH . D 4 HOH A 108 509 216 HOH HOH . D 4 HOH A 109 510 217 HOH HOH . D 4 HOH A 110 511 218 HOH HOH . D 4 HOH A 111 512 220 HOH HOH . D 4 HOH A 112 513 224 HOH HOH . D 4 HOH A 113 514 225 HOH HOH . D 4 HOH A 114 515 226 HOH HOH . D 4 HOH A 115 516 227 HOH HOH . D 4 HOH A 116 517 228 HOH HOH . D 4 HOH A 117 518 229 HOH HOH . D 4 HOH A 118 519 230 HOH HOH . D 4 HOH A 119 520 231 HOH HOH . D 4 HOH A 120 521 232 HOH HOH . D 4 HOH A 121 522 233 HOH HOH . D 4 HOH A 122 523 234 HOH HOH . D 4 HOH A 123 524 235 HOH HOH . D 4 HOH A 124 525 236 HOH HOH . D 4 HOH A 125 526 237 HOH HOH . D 4 HOH A 126 527 238 HOH HOH . D 4 HOH A 127 528 239 HOH HOH . D 4 HOH A 128 529 240 HOH HOH . D 4 HOH A 129 530 241 HOH HOH . D 4 HOH A 130 531 242 HOH HOH . D 4 HOH A 131 532 243 HOH HOH . D 4 HOH A 132 533 244 HOH HOH . D 4 HOH A 133 534 246 HOH HOH . D 4 HOH A 134 535 247 HOH HOH . D 4 HOH A 135 536 248 HOH HOH . D 4 HOH A 136 537 249 HOH HOH . D 4 HOH A 137 538 250 HOH HOH . D 4 HOH A 138 539 252 HOH HOH . D 4 HOH A 139 540 253 HOH HOH . D 4 HOH A 140 541 303 HOH HOH . D 4 HOH A 141 542 304 HOH HOH . D 4 HOH A 142 543 305 HOH HOH . D 4 HOH A 143 544 306 HOH HOH . D 4 HOH A 144 545 307 HOH HOH . D 4 HOH A 145 546 308 HOH HOH . D 4 HOH A 146 547 309 HOH HOH . D 4 HOH A 147 548 310 HOH HOH . D 4 HOH A 148 549 311 HOH HOH . D 4 HOH A 149 550 312 HOH HOH . D 4 HOH A 150 551 313 HOH HOH . D 4 HOH A 151 552 314 HOH HOH . D 4 HOH A 152 553 315 HOH HOH . D 4 HOH A 153 554 316 HOH HOH . D 4 HOH A 154 555 317 HOH HOH . D 4 HOH A 155 556 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 MG7 . . . C 3 16.928 11.795 21.934 1 29.63 ? N9 MG7 401 A 1 HETATM 2 C C8 MG7 . . . C 3 16.163 12.713 22.581 1 24.7 ? C8 MG7 401 A 1 HETATM 3 N N7 MG7 . . . C 3 16.349 14.033 22.104 1 24.84 ? N7 MG7 401 A 1 HETATM 4 C C5 MG7 . . . C 3 17.307 13.822 21.1 1 23.58 ? C5 MG7 401 A 1 HETATM 5 C C6 MG7 . . . C 3 17.878 14.798 20.252 1 22.33 ? C6 MG7 401 A 1 HETATM 6 O O6 MG7 . . . C 3 17.535 16.189 20.289 1 19.96 ? O6 MG7 401 A 1 HETATM 7 N N1 MG7 . . . C 3 18.843 14.253 19.292 1 22.8 ? N1 MG7 401 A 1 HETATM 8 C C2 MG7 . . . C 3 19.151 12.892 19.237 1 24.64 ? C2 MG7 401 A 1 HETATM 9 N N2 MG7 . . . C 3 20.032 12.5 18.296 1 21.47 ? N2 MG7 401 A 1 HETATM 10 N N3 MG7 . . . C 3 18.583 11.985 20.066 1 23.94 ? N3 MG7 401 A 1 HETATM 11 C C4 MG7 . . . C 3 17.678 12.494 20.969 1 26.62 ? C4 MG7 401 A 1 HETATM 12 O O5' MG7 . . . C 3 20.913 10.667 22.85 1 44.23 ? O5' MG7 401 A 1 HETATM 13 C C5' MG7 . . . C 3 20.272 9.497 23.428 1 41.37 ? C5' MG7 401 A 1 HETATM 14 C C4' MG7 . . . C 3 18.759 9.183 23.046 1 40.7 ? C4' MG7 401 A 1 HETATM 15 O O4' MG7 . . . C 3 17.843 10.247 23.376 1 37.63 ? O4' MG7 401 A 1 HETATM 16 C C1' MG7 . . . C 3 16.889 10.381 22.314 1 33.71 ? C1' MG7 401 A 1 HETATM 17 C CN7 MG7 . . . C 3 15.497 15.156 22.465 1 19.18 ? CN7 MG7 401 A 1 HETATM 18 C C2' MG7 . . . C 3 17.199 9.414 21.318 1 39.41 ? C2' MG7 401 A 1 HETATM 19 O O2' MG7 . . . C 3 16.105 8.506 21.559 1 43.56 ? O2' MG7 401 A 1 HETATM 20 C C3' MG7 . . . C 3 18.598 9.016 21.628 1 41.98 ? C3' MG7 401 A 1 HETATM 21 O O3' MG7 . . . C 3 18.974 7.612 21.329 1 45.62 ? O3' MG7 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #