data_4DCK # _model_server_result.job_id 7EFkrMzfasYvSrIs59BSMQ _model_server_result.datetime_utc '2024-10-28 02:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4DCK # _exptl.entry_id 4DCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DCK _cell.length_a 126.041 _cell.length_b 126.041 _cell.length_c 126.041 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA nonameric 9 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -63.0205 -63.0205 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 63.0205 -63.0205 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 94 B ASP 94 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 B OD1 ASP 96 B ASP 96 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 B OD2 ASP 96 B ASP 96 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 B OD1 ASN 98 B ASN 98 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 B O TYR 100 B TYR 100 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc6 B OD1 ASP 130 B ASP 130 1_555 D MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 B OD1 ASP 132 B ASP 132 1_555 D MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc8 B OD2 ASP 132 B ASP 132 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc9 B OD1 ASP 134 B ASP 134 1_555 D MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc10 B O GLN 136 B GLN 136 1_555 D MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc11 D MG MG . B MG 201 1_555 H O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 D MG MG . B MG 201 1_555 H O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc13 E MG MG . B MG 202 1_555 H O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc14 E MG MG . B MG 202 1_555 H O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc15 E MG MG . B MG 202 1_555 H O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc16 E MG MG . B MG 202 1_555 H O HOH . B HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc17 F MG MG . B MG 203 1_555 H O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc18 F MG MG . B MG 203 1_555 H O HOH . B HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DCK _atom_sites.fract_transf_matrix[1][1] 0.007934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG B 1 201 1 MG MG . E 4 MG B 1 202 1 MG MG . F 4 MG B 1 203 1 MG MG . G 5 HOH A 1 2001 1 HOH HOH . G 5 HOH A 2 2002 2 HOH HOH . G 5 HOH A 3 2003 5 HOH HOH . G 5 HOH A 4 2004 6 HOH HOH . G 5 HOH A 5 2005 9 HOH HOH . G 5 HOH A 6 2006 11 HOH HOH . G 5 HOH A 7 2007 20 HOH HOH . G 5 HOH A 8 2008 23 HOH HOH . G 5 HOH A 9 2009 24 HOH HOH . G 5 HOH A 10 2010 25 HOH HOH . G 5 HOH A 11 2011 26 HOH HOH . G 5 HOH A 12 2012 27 HOH HOH . G 5 HOH A 13 2013 31 HOH HOH . G 5 HOH A 14 2014 32 HOH HOH . G 5 HOH A 15 2015 34 HOH HOH . G 5 HOH A 16 2016 36 HOH HOH . G 5 HOH A 17 2017 39 HOH HOH . G 5 HOH A 18 2018 40 HOH HOH . G 5 HOH A 19 2019 41 HOH HOH . G 5 HOH A 20 2020 42 HOH HOH . G 5 HOH A 21 2021 44 HOH HOH . G 5 HOH A 22 2022 49 HOH HOH . G 5 HOH A 23 2023 50 HOH HOH . G 5 HOH A 24 2024 51 HOH HOH . G 5 HOH A 25 2025 52 HOH HOH . G 5 HOH A 26 2026 54 HOH HOH . G 5 HOH A 27 2027 56 HOH HOH . G 5 HOH A 28 2028 59 HOH HOH . G 5 HOH A 29 2029 60 HOH HOH . G 5 HOH A 30 2030 70 HOH HOH . G 5 HOH A 31 2031 77 HOH HOH . G 5 HOH A 32 2032 78 HOH HOH . G 5 HOH A 33 2033 80 HOH HOH . G 5 HOH A 34 2034 83 HOH HOH . G 5 HOH A 35 2035 84 HOH HOH . G 5 HOH A 36 2036 87 HOH HOH . G 5 HOH A 37 2037 89 HOH HOH . G 5 HOH A 38 2038 90 HOH HOH . G 5 HOH A 39 2039 91 HOH HOH . G 5 HOH A 40 2040 94 HOH HOH . G 5 HOH A 41 2041 95 HOH HOH . G 5 HOH A 42 2042 96 HOH HOH . G 5 HOH A 43 2043 97 HOH HOH . G 5 HOH A 44 2044 99 HOH HOH . G 5 HOH A 45 2045 100 HOH HOH . G 5 HOH A 46 2046 104 HOH HOH . G 5 HOH A 47 2047 105 HOH HOH . G 5 HOH A 48 2048 109 HOH HOH . G 5 HOH A 49 2049 110 HOH HOH . G 5 HOH A 50 2050 113 HOH HOH . G 5 HOH A 51 2051 116 HOH HOH . G 5 HOH A 52 2052 118 HOH HOH . G 5 HOH A 53 2053 121 HOH HOH . G 5 HOH A 54 2054 122 HOH HOH . G 5 HOH A 55 2055 124 HOH HOH . G 5 HOH A 56 2056 127 HOH HOH . G 5 HOH A 57 2057 134 HOH HOH . G 5 HOH A 58 2058 138 HOH HOH . G 5 HOH A 59 2059 140 HOH HOH . G 5 HOH A 60 2060 141 HOH HOH . G 5 HOH A 61 2061 146 HOH HOH . G 5 HOH A 62 2062 149 HOH HOH . G 5 HOH A 63 2063 150 HOH HOH . G 5 HOH A 64 2064 151 HOH HOH . G 5 HOH A 65 2065 158 HOH HOH . G 5 HOH A 66 2066 161 HOH HOH . G 5 HOH A 67 2067 163 HOH HOH . G 5 HOH A 68 2068 169 HOH HOH . G 5 HOH A 69 2069 178 HOH HOH . G 5 HOH A 70 2070 179 HOH HOH . G 5 HOH A 71 2071 185 HOH HOH . G 5 HOH A 72 2072 190 HOH HOH . G 5 HOH A 73 2073 197 HOH HOH . G 5 HOH A 74 2074 199 HOH HOH . G 5 HOH A 75 2075 201 HOH HOH . G 5 HOH A 76 2076 206 HOH HOH . G 5 HOH A 77 2077 210 HOH HOH . G 5 HOH A 78 2078 214 HOH HOH . G 5 HOH A 79 2079 215 HOH HOH . G 5 HOH A 80 2080 216 HOH HOH . G 5 HOH A 81 2081 218 HOH HOH . G 5 HOH A 82 2082 225 HOH HOH . G 5 HOH A 83 2083 228 HOH HOH . G 5 HOH A 84 2084 229 HOH HOH . G 5 HOH A 85 2085 230 HOH HOH . G 5 HOH A 86 2086 233 HOH HOH . G 5 HOH A 87 2087 234 HOH HOH . H 5 HOH B 1 301 13 HOH HOH . H 5 HOH B 2 302 14 HOH HOH . H 5 HOH B 3 303 16 HOH HOH . H 5 HOH B 4 304 17 HOH HOH . H 5 HOH B 5 305 18 HOH HOH . H 5 HOH B 6 306 28 HOH HOH . H 5 HOH B 7 307 30 HOH HOH . H 5 HOH B 8 308 35 HOH HOH . H 5 HOH B 9 309 45 HOH HOH . H 5 HOH B 10 310 48 HOH HOH . H 5 HOH B 11 311 55 HOH HOH . H 5 HOH B 12 312 61 HOH HOH . H 5 HOH B 13 313 65 HOH HOH . H 5 HOH B 14 314 66 HOH HOH . H 5 HOH B 15 315 68 HOH HOH . H 5 HOH B 16 316 72 HOH HOH . H 5 HOH B 17 317 74 HOH HOH . H 5 HOH B 18 318 82 HOH HOH . H 5 HOH B 19 319 92 HOH HOH . H 5 HOH B 20 320 102 HOH HOH . H 5 HOH B 21 321 106 HOH HOH . H 5 HOH B 22 322 112 HOH HOH . H 5 HOH B 23 323 115 HOH HOH . H 5 HOH B 24 324 117 HOH HOH . H 5 HOH B 25 325 123 HOH HOH . H 5 HOH B 26 326 126 HOH HOH . H 5 HOH B 27 327 128 HOH HOH . H 5 HOH B 28 328 129 HOH HOH . H 5 HOH B 29 329 130 HOH HOH . H 5 HOH B 30 330 132 HOH HOH . H 5 HOH B 31 331 133 HOH HOH . H 5 HOH B 32 332 135 HOH HOH . H 5 HOH B 33 333 136 HOH HOH . H 5 HOH B 34 334 139 HOH HOH . H 5 HOH B 35 335 143 HOH HOH . H 5 HOH B 36 336 144 HOH HOH . H 5 HOH B 37 337 147 HOH HOH . H 5 HOH B 38 338 153 HOH HOH . H 5 HOH B 39 339 159 HOH HOH . H 5 HOH B 40 340 162 HOH HOH . H 5 HOH B 41 341 165 HOH HOH . H 5 HOH B 42 342 166 HOH HOH . H 5 HOH B 43 343 177 HOH HOH . H 5 HOH B 44 344 181 HOH HOH . H 5 HOH B 45 345 182 HOH HOH . H 5 HOH B 46 346 184 HOH HOH . H 5 HOH B 47 347 186 HOH HOH . H 5 HOH B 48 348 187 HOH HOH . H 5 HOH B 49 349 191 HOH HOH . H 5 HOH B 50 350 198 HOH HOH . H 5 HOH B 51 351 205 HOH HOH . H 5 HOH B 52 352 212 HOH HOH . H 5 HOH B 53 353 221 HOH HOH . H 5 HOH B 54 354 222 HOH HOH . H 5 HOH B 55 355 223 HOH HOH . H 5 HOH B 56 356 224 HOH HOH . H 5 HOH B 57 357 226 HOH HOH . H 5 HOH B 58 358 227 HOH HOH . H 5 HOH B 59 359 241 HOH HOH . H 5 HOH B 60 360 243 HOH HOH . H 5 HOH B 61 361 245 HOH HOH . H 5 HOH B 62 362 247 HOH HOH . I 5 HOH C 1 201 3 HOH HOH . I 5 HOH C 2 202 4 HOH HOH . I 5 HOH C 3 203 7 HOH HOH . I 5 HOH C 4 204 8 HOH HOH . I 5 HOH C 5 205 10 HOH HOH . I 5 HOH C 6 206 12 HOH HOH . I 5 HOH C 7 207 15 HOH HOH . I 5 HOH C 8 208 19 HOH HOH . I 5 HOH C 9 209 22 HOH HOH . I 5 HOH C 10 210 29 HOH HOH . I 5 HOH C 11 211 33 HOH HOH . I 5 HOH C 12 212 37 HOH HOH . I 5 HOH C 13 213 38 HOH HOH . I 5 HOH C 14 214 43 HOH HOH . I 5 HOH C 15 215 46 HOH HOH . I 5 HOH C 16 216 47 HOH HOH . I 5 HOH C 17 217 57 HOH HOH . I 5 HOH C 18 218 58 HOH HOH . I 5 HOH C 19 219 62 HOH HOH . I 5 HOH C 20 220 63 HOH HOH . I 5 HOH C 21 221 67 HOH HOH . I 5 HOH C 22 222 71 HOH HOH . I 5 HOH C 23 223 75 HOH HOH . I 5 HOH C 24 224 76 HOH HOH . I 5 HOH C 25 225 79 HOH HOH . I 5 HOH C 26 226 88 HOH HOH . I 5 HOH C 27 227 98 HOH HOH . I 5 HOH C 28 228 101 HOH HOH . I 5 HOH C 29 229 107 HOH HOH . I 5 HOH C 30 230 108 HOH HOH . I 5 HOH C 31 231 114 HOH HOH . I 5 HOH C 32 232 125 HOH HOH . I 5 HOH C 33 233 131 HOH HOH . I 5 HOH C 34 234 137 HOH HOH . I 5 HOH C 35 235 142 HOH HOH . I 5 HOH C 36 236 152 HOH HOH . I 5 HOH C 37 237 156 HOH HOH . I 5 HOH C 38 238 160 HOH HOH . I 5 HOH C 39 239 168 HOH HOH . I 5 HOH C 40 240 176 HOH HOH . I 5 HOH C 41 241 189 HOH HOH . I 5 HOH C 42 242 192 HOH HOH . I 5 HOH C 43 243 193 HOH HOH . I 5 HOH C 44 244 195 HOH HOH . I 5 HOH C 45 245 200 HOH HOH . I 5 HOH C 46 246 203 HOH HOH . I 5 HOH C 47 247 204 HOH HOH . I 5 HOH C 48 248 207 HOH HOH . I 5 HOH C 49 249 211 HOH HOH . I 5 HOH C 50 250 236 HOH HOH . I 5 HOH C 51 251 239 HOH HOH . I 5 HOH C 52 252 240 HOH HOH . I 5 HOH C 53 253 248 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -10.325 _atom_site.Cartn_y -10.849 _atom_site.Cartn_z -33.201 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #