data_4DD2
#
_model_server_result.job_id            BYoNC02rbEFoRGQwU9xFKw 
_model_server_result.datetime_utc      '2024-11-16 10:03:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dd2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    4DD2 
#
_exptl.entry_id    4DD2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DD2 
_cell.length_a            78.906 
_cell.length_b            78.906 
_cell.length_c            36.998 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4DD2 
_atom_sites.fract_transf_matrix[1][1]    0.012673 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 801 801 GOL GOL . 
C 2 GOL A 1 802 801 GOL GOL . 
D 2 GOL A 1 803 801 GOL GOL . 
E 2 GOL A 1 804 801 GOL GOL . 
F 2 GOL A 1 805 801 GOL GOL . 
G 2 GOL A 1 806 801 GOL GOL . 
H 2 GOL A 1 807 801 GOL GOL . 
I 2 GOL A 1 808 801 GOL GOL . 
J 2 GOL A 1 809 801 GOL GOL . 
K 3 HOH A 1 901 1 HOH HOH . 
K 3 HOH A 2 902 2 HOH HOH . 
K 3 HOH A 3 903 3 HOH HOH . 
K 3 HOH A 4 904 4 HOH HOH . 
K 3 HOH A 5 905 5 HOH HOH . 
K 3 HOH A 6 906 6 HOH HOH . 
K 3 HOH A 7 907 7 HOH HOH . 
K 3 HOH A 8 908 8 HOH HOH . 
K 3 HOH A 9 909 9 HOH HOH . 
K 3 HOH A 10 910 10 HOH HOH . 
K 3 HOH A 11 911 11 HOH HOH . 
K 3 HOH A 12 912 12 HOH HOH . 
K 3 HOH A 13 913 13 HOH HOH . 
K 3 HOH A 14 914 14 HOH HOH . 
K 3 HOH A 15 915 15 HOH HOH . 
K 3 HOH A 16 916 16 HOH HOH . 
K 3 HOH A 17 917 17 HOH HOH . 
K 3 HOH A 18 918 18 HOH HOH . 
K 3 HOH A 19 919 19 HOH HOH . 
K 3 HOH A 20 920 20 HOH HOH . 
K 3 HOH A 21 921 21 HOH HOH . 
K 3 HOH A 22 922 22 HOH HOH . 
K 3 HOH A 23 923 23 HOH HOH . 
K 3 HOH A 24 924 24 HOH HOH . 
K 3 HOH A 25 925 25 HOH HOH . 
K 3 HOH A 26 926 26 HOH HOH . 
K 3 HOH A 27 927 27 HOH HOH . 
K 3 HOH A 28 928 28 HOH HOH . 
K 3 HOH A 29 929 29 HOH HOH . 
K 3 HOH A 30 930 30 HOH HOH . 
K 3 HOH A 31 931 31 HOH HOH . 
K 3 HOH A 32 932 32 HOH HOH . 
K 3 HOH A 33 933 33 HOH HOH . 
K 3 HOH A 34 934 34 HOH HOH . 
K 3 HOH A 35 935 35 HOH HOH . 
K 3 HOH A 36 936 36 HOH HOH . 
K 3 HOH A 37 937 37 HOH HOH . 
K 3 HOH A 38 938 38 HOH HOH . 
K 3 HOH A 39 939 39 HOH HOH . 
K 3 HOH A 40 940 40 HOH HOH . 
K 3 HOH A 41 941 41 HOH HOH . 
K 3 HOH A 42 942 42 HOH HOH . 
K 3 HOH A 43 943 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 2.686 -23.526 -5.633 1 53.37 ? C1 GOL 801 A 1 
HETATM 2 O O1 GOL . . . B 2 1.83 -24.309 -4.798 1 56.02 ? O1 GOL 801 A 1 
HETATM 3 C C2 GOL . . . B 2 2.063 -23.355 -7.007 1 52.78 ? C2 GOL 801 A 1 
HETATM 4 O O2 GOL . . . B 2 0.906 -22.491 -6.986 1 53.58 ? O2 GOL 801 A 1 
HETATM 5 C C3 GOL . . . B 2 1.65 -24.716 -7.51 1 55.59 ? C3 GOL 801 A 1 
HETATM 6 O O3 GOL . . . B 2 0.482 -24.54 -8.311 1 62.93 ? O3 GOL 801 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#