data_4DDB # _model_server_result.job_id yH9CLi6oQmqSjyID1kxFBg _model_server_result.datetime_utc '2024-11-16 08:36:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ddb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":210}' # _entry.id 4DDB # _exptl.entry_id 4DDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DDB _cell.length_a 79.641 _cell.length_b 79.641 _cell.length_c 37.018 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 B PT1 CPT . A CPT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 A ND1 HIS 15 A HIS 15 1_555 C PT1 CPT . A CPT 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 93 n n S C1 DMS sing 94 n n S C2 DMS sing 95 n n C1 H11 DMS sing 96 n n C1 H12 DMS sing 97 n n C1 H13 DMS sing 98 n n C2 H21 DMS sing 99 n n C2 H22 DMS sing 100 n n C2 H23 DMS sing 101 n n # _atom_sites.entry_id 4DDB _atom_sites.fract_transf_matrix[1][1] 0.012556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPT A 1 201 1 CPT CPT . C 2 CPT A 1 202 1 CPT CPT . D 3 DMS A 1 203 1 DMS DMS . E 3 DMS A 1 204 1 DMS DMS . F 3 DMS A 1 205 1 DMS DMS . G 3 DMS A 1 206 1 DMS DMS . H 3 DMS A 1 207 1 DMS DMS . I 3 DMS A 1 208 1 DMS DMS . J 3 DMS A 1 209 1 DMS DMS . K 3 DMS A 1 210 1 DMS DMS . L 3 DMS A 1 211 1 DMS DMS . M 3 DMS A 1 212 1 DMS DMS . N 4 HOH A 1 301 1 HOH HOH . N 4 HOH A 2 302 2 HOH HOH . N 4 HOH A 3 303 3 HOH HOH . N 4 HOH A 4 304 4 HOH HOH . N 4 HOH A 5 305 5 HOH HOH . N 4 HOH A 6 306 6 HOH HOH . N 4 HOH A 7 307 7 HOH HOH . N 4 HOH A 8 308 8 HOH HOH . N 4 HOH A 9 309 9 HOH HOH . N 4 HOH A 10 310 10 HOH HOH . N 4 HOH A 11 311 11 HOH HOH . N 4 HOH A 12 312 12 HOH HOH . N 4 HOH A 13 313 13 HOH HOH . N 4 HOH A 14 314 14 HOH HOH . N 4 HOH A 15 315 17 HOH HOH . N 4 HOH A 16 316 18 HOH HOH . N 4 HOH A 17 317 19 HOH HOH . N 4 HOH A 18 318 20 HOH HOH . N 4 HOH A 19 319 21 HOH HOH . N 4 HOH A 20 320 22 HOH HOH . N 4 HOH A 21 321 23 HOH HOH . N 4 HOH A 22 322 24 HOH HOH . N 4 HOH A 23 323 25 HOH HOH . N 4 HOH A 24 324 26 HOH HOH . N 4 HOH A 25 325 30 HOH HOH . N 4 HOH A 26 326 31 HOH HOH . N 4 HOH A 27 327 33 HOH HOH . N 4 HOH A 28 328 34 HOH HOH . N 4 HOH A 29 329 35 HOH HOH . N 4 HOH A 30 330 37 HOH HOH . N 4 HOH A 31 331 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . K 3 2.174 -4.451 11.804 1 42.15 ? S DMS 210 A 1 HETATM 2 O O DMS . . . K 3 2.593 -5.323 10.698 1 38.88 ? O DMS 210 A 1 HETATM 3 C C1 DMS . . . K 3 0.469 -4.391 11.959 1 38.06 ? C1 DMS 210 A 1 HETATM 4 C C2 DMS . . . K 3 2.616 -5.145 13.3 1 40.56 ? C2 DMS 210 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #