data_4DDJ # _model_server_result.job_id mjKTKHF7PBxLFuWJZAbGDA _model_server_result.datetime_utc '2024-10-18 19:26:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ddj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":112}' # _entry.id 4DDJ # _exptl.entry_id 4DDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DDJ _cell.length_a 39.794 _cell.length_b 39.794 _cell.length_c 247.284 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 4 1_555 A SG CYS 81 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 9 A CYS 7 1_555 A SG CYS 75 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 37 A CYS 35 1_555 A SG CYS 49 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DDJ _atom_sites.fract_transf_matrix[1][1] 0.025129 _atom_sites.fract_transf_matrix[1][2] 0.014508 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDA A 1 101 101 LDA LDA . C 2 LDA A 1 102 102 LDA LDA . D 2 LDA A 1 103 103 LDA LDA . E 2 LDA A 1 104 104 LDA LDA . F 2 LDA A 1 105 105 LDA LDA . G 2 LDA A 1 106 106 LDA LDA . H 2 LDA A 1 107 107 LDA LDA . I 2 LDA A 1 108 108 LDA LDA . J 2 LDA A 1 109 109 LDA LDA . K 2 LDA A 1 110 110 LDA LDA . L 2 LDA A 1 111 111 LDA LDA . M 2 LDA A 1 112 112 LDA LDA . N 2 LDA A 1 113 113 LDA LDA . O 2 LDA A 1 114 114 LDA LDA . P 2 LDA A 1 115 115 LDA LDA . Q 2 LDA A 1 116 116 LDA LDA . R 2 LDA A 1 117 117 LDA LDA . S 2 LDA A 1 118 118 LDA LDA . T 2 LDA A 1 119 119 LDA LDA . U 2 LDA A 1 120 120 LDA LDA . V 3 HOH A 1 201 201 HOH HOH . V 3 HOH A 2 202 202 HOH HOH . V 3 HOH A 3 203 203 HOH HOH . V 3 HOH A 4 204 204 HOH HOH . V 3 HOH A 5 205 205 HOH HOH . V 3 HOH A 6 206 206 HOH HOH . V 3 HOH A 7 207 207 HOH HOH . V 3 HOH A 8 208 208 HOH HOH . V 3 HOH A 9 209 209 HOH HOH . V 3 HOH A 10 210 210 HOH HOH . V 3 HOH A 11 211 211 HOH HOH . V 3 HOH A 12 212 212 HOH HOH . V 3 HOH A 13 213 213 HOH HOH . V 3 HOH A 14 214 214 HOH HOH . V 3 HOH A 15 215 215 HOH HOH . V 3 HOH A 16 216 216 HOH HOH . V 3 HOH A 17 217 217 HOH HOH . V 3 HOH A 18 218 218 HOH HOH . V 3 HOH A 19 219 219 HOH HOH . V 3 HOH A 20 220 220 HOH HOH . V 3 HOH A 21 221 221 HOH HOH . V 3 HOH A 22 222 222 HOH HOH . V 3 HOH A 23 223 223 HOH HOH . V 3 HOH A 24 224 224 HOH HOH . V 3 HOH A 25 225 225 HOH HOH . V 3 HOH A 26 226 226 HOH HOH . V 3 HOH A 27 227 227 HOH HOH . V 3 HOH A 28 228 228 HOH HOH . V 3 HOH A 29 229 229 HOH HOH . V 3 HOH A 30 230 230 HOH HOH . V 3 HOH A 31 231 231 HOH HOH . V 3 HOH A 32 232 232 HOH HOH . V 3 HOH A 33 233 233 HOH HOH . V 3 HOH A 34 234 234 HOH HOH . V 3 HOH A 35 235 235 HOH HOH . V 3 HOH A 36 236 236 HOH HOH . V 3 HOH A 37 237 237 HOH HOH . V 3 HOH A 38 238 238 HOH HOH . V 3 HOH A 39 239 239 HOH HOH . V 3 HOH A 40 240 240 HOH HOH . V 3 HOH A 41 241 241 HOH HOH . V 3 HOH A 42 242 242 HOH HOH . V 3 HOH A 43 243 243 HOH HOH . V 3 HOH A 44 244 244 HOH HOH . V 3 HOH A 45 245 245 HOH HOH . V 3 HOH A 46 246 246 HOH HOH . V 3 HOH A 47 247 247 HOH HOH . V 3 HOH A 48 248 248 HOH HOH . V 3 HOH A 49 249 249 HOH HOH . V 3 HOH A 50 250 250 HOH HOH . V 3 HOH A 51 251 251 HOH HOH . V 3 HOH A 52 252 252 HOH HOH . V 3 HOH A 53 253 253 HOH HOH . V 3 HOH A 54 254 254 HOH HOH . V 3 HOH A 55 255 255 HOH HOH . V 3 HOH A 56 256 256 HOH HOH . V 3 HOH A 57 257 257 HOH HOH . V 3 HOH A 58 258 258 HOH HOH . V 3 HOH A 59 259 259 HOH HOH . V 3 HOH A 60 260 260 HOH HOH . V 3 HOH A 61 261 261 HOH HOH . V 3 HOH A 62 262 262 HOH HOH . V 3 HOH A 63 263 263 HOH HOH . V 3 HOH A 64 264 264 HOH HOH . V 3 HOH A 65 265 265 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . M 2 37.057 4.922 -4.713 1 87.53 ? N1 LDA 112 A 1 HETATM 2 O O1 LDA . . . M 2 37.245 5.632 -5.726 1 89.44 ? O1 LDA 112 A 1 HETATM 3 C CM1 LDA . . . M 2 36.88 5.822 -3.553 1 88.35 ? CM1 LDA 112 A 1 HETATM 4 C CM2 LDA . . . M 2 38.273 4.115 -4.506 1 88.15 ? CM2 LDA 112 A 1 HETATM 5 C C1 LDA . . . M 2 35.87 4.106 -4.978 1 84.31 ? C1 LDA 112 A 1 HETATM 6 C C2 LDA . . . M 2 35.836 2.84 -4.108 1 80.69 ? C2 LDA 112 A 1 HETATM 7 C C3 LDA . . . M 2 34.411 2.434 -3.746 1 77.4 ? C3 LDA 112 A 1 HETATM 8 C C4 LDA . . . M 2 33.467 2.835 -4.873 1 75.85 ? C4 LDA 112 A 1 HETATM 9 C C5 LDA . . . M 2 32.178 2.035 -4.869 1 72.9 ? C5 LDA 112 A 1 HETATM 10 C C6 LDA . . . M 2 31.194 2.781 -5.745 1 71.32 ? C6 LDA 112 A 1 HETATM 11 C C7 LDA . . . M 2 29.789 2.524 -5.255 1 69.96 ? C7 LDA 112 A 1 HETATM 12 C C8 LDA . . . M 2 28.956 2.009 -6.41 1 69.74 ? C8 LDA 112 A 1 HETATM 13 C C9 LDA . . . M 2 28.02 0.926 -5.907 1 70.24 ? C9 LDA 112 A 1 HETATM 14 C C10 LDA . . . M 2 26.788 1.494 -5.198 1 70.47 ? C10 LDA 112 A 1 HETATM 15 C C11 LDA . . . M 2 25.521 0.979 -5.858 1 70 ? C11 LDA 112 A 1 HETATM 16 C C12 LDA . . . M 2 25.652 1.133 -7.368 1 70.98 ? C12 LDA 112 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #