data_4DDR # _model_server_result.job_id 63YIn5GAVPWqRHLV3D4ejQ _model_server_result.datetime_utc '2024-11-23 07:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ddr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4DDR # _exptl.entry_id 4DDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.408 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DDR _cell.length_a 85.285 _cell.length_b 85.285 _cell.length_c 77.131 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H24 N4 O4' _chem_comp.formula_weight 360.408 _chem_comp.id MMV _chem_comp.mon_nstd_flag . _chem_comp.name '3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N8 C3 MMV sing 237 n n C3 N4 MMV doub 238 n y C3 N2 MMV sing 239 n y N4 C5 MMV sing 240 n y N2 C1 MMV doub 241 n y C10 C9 MMV sing 242 n n C5 C9 MMV sing 243 n n C5 C6 MMV doub 244 n y O26 C24 MMV doub 245 n n O25 C24 MMV sing 246 n n C1 C6 MMV sing 247 n y C1 N7 MMV sing 248 n n C24 C23 MMV sing 249 n n C6 O11 MMV sing 250 n n C23 C22 MMV sing 251 n n O11 C12 MMV sing 252 n n C12 C13 MMV sing 253 n n C22 C17 MMV sing 254 n n C17 C18 MMV doub 255 n y C17 C16 MMV sing 256 n y C18 C19 MMV sing 257 n y O15 C16 MMV sing 258 n n O15 C14 MMV sing 259 n n C13 C14 MMV sing 260 n n C16 C21 MMV doub 261 n y C19 C20 MMV doub 262 n y C21 C20 MMV sing 263 n y N7 H1 MMV sing 264 n n N7 H2 MMV sing 265 n n N8 H3 MMV sing 266 n n N8 H4 MMV sing 267 n n C9 H5 MMV sing 268 n n C9 H6 MMV sing 269 n n C10 H7 MMV sing 270 n n C10 H8 MMV sing 271 n n C10 H9 MMV sing 272 n n C12 H10 MMV sing 273 n n C12 H11 MMV sing 274 n n C13 H12 MMV sing 275 n n C13 H13 MMV sing 276 n n C14 H14 MMV sing 277 n n C14 H15 MMV sing 278 n n C18 H16 MMV sing 279 n n C19 H17 MMV sing 280 n n C20 H18 MMV sing 281 n n C21 H19 MMV sing 282 n n C22 H20 MMV sing 283 n n C22 H21 MMV sing 284 n n C23 H22 MMV sing 285 n n C23 H23 MMV sing 286 n n O25 H24 MMV sing 287 n n # _atom_sites.entry_id 4DDR _atom_sites.fract_transf_matrix[1][1] 0.011725 _atom_sites.fract_transf_matrix[1][2] 0.00677 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 201 187 NDP NDP . C 3 MMV A 1 202 188 MMV MMV . D 4 HOH A 1 1001 1001 HOH HOH . D 4 HOH A 2 1002 1002 HOH HOH . D 4 HOH A 3 1003 1003 HOH HOH . D 4 HOH A 4 1004 1004 HOH HOH . D 4 HOH A 5 1005 1005 HOH HOH . D 4 HOH A 6 1006 1006 HOH HOH . D 4 HOH A 7 1007 1007 HOH HOH . D 4 HOH A 8 1008 1008 HOH HOH . D 4 HOH A 9 1009 1009 HOH HOH . D 4 HOH A 10 1010 1010 HOH HOH . D 4 HOH A 11 1011 1011 HOH HOH . D 4 HOH A 12 1012 1012 HOH HOH . D 4 HOH A 13 1013 1013 HOH HOH . D 4 HOH A 14 1014 1014 HOH HOH . D 4 HOH A 15 1015 1015 HOH HOH . D 4 HOH A 16 1016 1016 HOH HOH . D 4 HOH A 17 1017 1017 HOH HOH . D 4 HOH A 18 1018 1018 HOH HOH . D 4 HOH A 19 1019 1019 HOH HOH . D 4 HOH A 20 1020 1020 HOH HOH . D 4 HOH A 21 1021 1021 HOH HOH . D 4 HOH A 22 1022 1022 HOH HOH . D 4 HOH A 23 1023 1023 HOH HOH . D 4 HOH A 24 1024 1024 HOH HOH . D 4 HOH A 25 1025 1025 HOH HOH . D 4 HOH A 26 1026 1026 HOH HOH . D 4 HOH A 27 1027 1027 HOH HOH . D 4 HOH A 28 1028 1028 HOH HOH . D 4 HOH A 29 1029 1029 HOH HOH . D 4 HOH A 30 1030 1030 HOH HOH . D 4 HOH A 31 1031 1031 HOH HOH . D 4 HOH A 32 1032 1032 HOH HOH . D 4 HOH A 33 1033 1033 HOH HOH . D 4 HOH A 34 1034 1034 HOH HOH . D 4 HOH A 35 1035 1035 HOH HOH . D 4 HOH A 36 1036 1036 HOH HOH . D 4 HOH A 37 1037 1037 HOH HOH . D 4 HOH A 38 1038 1038 HOH HOH . D 4 HOH A 39 1039 1039 HOH HOH . D 4 HOH A 40 1040 1040 HOH HOH . D 4 HOH A 41 1041 1041 HOH HOH . D 4 HOH A 42 1042 1042 HOH HOH . D 4 HOH A 43 1043 1043 HOH HOH . D 4 HOH A 44 1044 1044 HOH HOH . D 4 HOH A 45 1045 1045 HOH HOH . D 4 HOH A 46 1046 1046 HOH HOH . D 4 HOH A 47 1047 1047 HOH HOH . D 4 HOH A 48 1048 1048 HOH HOH . D 4 HOH A 49 1049 1049 HOH HOH . D 4 HOH A 50 1050 1050 HOH HOH . D 4 HOH A 51 1051 1051 HOH HOH . D 4 HOH A 52 1052 1052 HOH HOH . D 4 HOH A 53 1053 1053 HOH HOH . D 4 HOH A 54 1054 1054 HOH HOH . D 4 HOH A 55 1055 1055 HOH HOH . D 4 HOH A 56 1056 1056 HOH HOH . D 4 HOH A 57 1057 1057 HOH HOH . D 4 HOH A 58 1058 1058 HOH HOH . D 4 HOH A 59 1059 1059 HOH HOH . D 4 HOH A 60 1060 1060 HOH HOH . D 4 HOH A 61 1061 1061 HOH HOH . D 4 HOH A 62 1062 1062 HOH HOH . D 4 HOH A 63 1063 1063 HOH HOH . D 4 HOH A 64 1064 1064 HOH HOH . D 4 HOH A 65 1065 1065 HOH HOH . D 4 HOH A 66 1066 1066 HOH HOH . D 4 HOH A 67 1067 1067 HOH HOH . D 4 HOH A 68 1068 1068 HOH HOH . D 4 HOH A 69 1069 1069 HOH HOH . D 4 HOH A 70 1070 1070 HOH HOH . D 4 HOH A 71 1071 1071 HOH HOH . D 4 HOH A 72 1072 1072 HOH HOH . D 4 HOH A 73 1073 1073 HOH HOH . D 4 HOH A 74 1074 1074 HOH HOH . D 4 HOH A 75 1075 1075 HOH HOH . D 4 HOH A 76 1076 1076 HOH HOH . D 4 HOH A 77 1077 1077 HOH HOH . D 4 HOH A 78 1078 1078 HOH HOH . D 4 HOH A 79 1079 1079 HOH HOH . D 4 HOH A 80 1080 1080 HOH HOH . D 4 HOH A 81 1081 1081 HOH HOH . D 4 HOH A 82 1082 1082 HOH HOH . D 4 HOH A 83 1083 1083 HOH HOH . D 4 HOH A 84 1084 1084 HOH HOH . D 4 HOH A 85 1085 1085 HOH HOH . D 4 HOH A 86 1086 1086 HOH HOH . D 4 HOH A 87 1087 1087 HOH HOH . D 4 HOH A 88 1088 1088 HOH HOH . D 4 HOH A 89 1089 1089 HOH HOH . D 4 HOH A 90 1090 1090 HOH HOH . D 4 HOH A 91 1091 1091 HOH HOH . D 4 HOH A 92 1092 1092 HOH HOH . D 4 HOH A 93 1093 1093 HOH HOH . D 4 HOH A 94 1094 1094 HOH HOH . D 4 HOH A 95 1095 1095 HOH HOH . D 4 HOH A 96 1096 1096 HOH HOH . D 4 HOH A 97 1097 1097 HOH HOH . D 4 HOH A 98 1098 1098 HOH HOH . D 4 HOH A 99 1099 1099 HOH HOH . D 4 HOH A 100 1100 1100 HOH HOH . D 4 HOH A 101 1101 1101 HOH HOH . D 4 HOH A 102 1102 1102 HOH HOH . D 4 HOH A 103 1103 1103 HOH HOH . D 4 HOH A 104 1104 1104 HOH HOH . D 4 HOH A 105 1105 1105 HOH HOH . D 4 HOH A 106 1106 1106 HOH HOH . D 4 HOH A 107 1107 1107 HOH HOH . D 4 HOH A 108 1108 1108 HOH HOH . D 4 HOH A 109 1109 1109 HOH HOH . D 4 HOH A 110 1110 1110 HOH HOH . D 4 HOH A 111 1111 1111 HOH HOH . D 4 HOH A 112 1112 1112 HOH HOH . D 4 HOH A 113 1113 1113 HOH HOH . D 4 HOH A 114 1114 1114 HOH HOH . D 4 HOH A 115 1115 1115 HOH HOH . D 4 HOH A 116 1116 1116 HOH HOH . D 4 HOH A 117 1117 1117 HOH HOH . D 4 HOH A 118 1118 1118 HOH HOH . D 4 HOH A 119 1119 1119 HOH HOH . D 4 HOH A 120 1120 1120 HOH HOH . D 4 HOH A 121 1121 1121 HOH HOH . D 4 HOH A 122 1122 1122 HOH HOH . D 4 HOH A 123 1123 1123 HOH HOH . D 4 HOH A 124 1124 1124 HOH HOH . D 4 HOH A 125 1125 1125 HOH HOH . D 4 HOH A 126 1126 1126 HOH HOH . D 4 HOH A 127 1127 1127 HOH HOH . D 4 HOH A 128 1128 1128 HOH HOH . D 4 HOH A 129 1129 1129 HOH HOH . D 4 HOH A 130 1130 1130 HOH HOH . D 4 HOH A 131 1131 1131 HOH HOH . D 4 HOH A 132 1132 1132 HOH HOH . D 4 HOH A 133 1133 1133 HOH HOH . D 4 HOH A 134 1134 1134 HOH HOH . D 4 HOH A 135 1135 1135 HOH HOH . D 4 HOH A 136 1136 1136 HOH HOH . D 4 HOH A 137 1137 1137 HOH HOH . D 4 HOH A 138 1138 1138 HOH HOH . D 4 HOH A 139 1139 1139 HOH HOH . D 4 HOH A 140 1140 1140 HOH HOH . D 4 HOH A 141 1141 1141 HOH HOH . D 4 HOH A 142 1142 1142 HOH HOH . D 4 HOH A 143 1143 1143 HOH HOH . D 4 HOH A 144 1144 1144 HOH HOH . D 4 HOH A 145 1145 1145 HOH HOH . D 4 HOH A 146 1146 1146 HOH HOH . D 4 HOH A 147 1147 1147 HOH HOH . D 4 HOH A 148 1148 1148 HOH HOH . D 4 HOH A 149 1149 1149 HOH HOH . D 4 HOH A 150 1150 1150 HOH HOH . D 4 HOH A 151 1151 1151 HOH HOH . D 4 HOH A 152 1152 1152 HOH HOH . D 4 HOH A 153 1153 1153 HOH HOH . D 4 HOH A 154 1154 1154 HOH HOH . D 4 HOH A 155 1155 1155 HOH HOH . D 4 HOH A 156 1156 1156 HOH HOH . D 4 HOH A 157 1157 1157 HOH HOH . D 4 HOH A 158 1158 1158 HOH HOH . D 4 HOH A 159 1159 1159 HOH HOH . D 4 HOH A 160 1160 1160 HOH HOH . D 4 HOH A 161 1161 1161 HOH HOH . D 4 HOH A 162 1162 1162 HOH HOH . D 4 HOH A 163 1163 1163 HOH HOH . D 4 HOH A 164 1164 1164 HOH HOH . D 4 HOH A 165 1165 1165 HOH HOH . D 4 HOH A 166 1166 1166 HOH HOH . D 4 HOH A 167 1167 1167 HOH HOH . D 4 HOH A 168 1168 1168 HOH HOH . D 4 HOH A 169 1169 1169 HOH HOH . D 4 HOH A 170 1170 1170 HOH HOH . D 4 HOH A 171 1171 1171 HOH HOH . D 4 HOH A 172 1172 1172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMV . . . C 3 26.564 12.401 -2.295 1 21.46 ? C1 MMV 202 A 1 HETATM 2 N N2 MMV . . . C 3 26.184 12.252 -3.577 1 22.51 ? N2 MMV 202 A 1 HETATM 3 C C3 MMV . . . C 3 27.083 12.314 -4.631 1 20.8 ? C3 MMV 202 A 1 HETATM 4 N N4 MMV . . . C 3 28.405 12.527 -4.365 1 23.25 ? N4 MMV 202 A 1 HETATM 5 C C5 MMV . . . C 3 28.911 12.695 -3.066 1 24.44 ? C5 MMV 202 A 1 HETATM 6 C C6 MMV . . . C 3 27.938 12.634 -1.973 1 24.1 ? C6 MMV 202 A 1 HETATM 7 N N7 MMV . . . C 3 25.711 12.337 -1.323 1 20.44 ? N7 MMV 202 A 1 HETATM 8 N N8 MMV . . . C 3 26.626 12.16 -5.892 1 19.89 ? N8 MMV 202 A 1 HETATM 9 C C9 MMV . . . C 3 30.317 12.905 -2.912 1 24.63 ? C9 MMV 202 A 1 HETATM 10 C C10 MMV . . . C 3 30.696 14.331 -3.496 1 27.37 ? C10 MMV 202 A 1 HETATM 11 O O11 MMV . . . C 3 28.258 12.776 -0.633 1 24.08 ? O11 MMV 202 A 1 HETATM 12 C C12 MMV . . . C 3 28.338 14.16 -0.202 1 25 ? C12 MMV 202 A 1 HETATM 13 C C13 MMV . . . C 3 28.463 14.098 1.359 1 25.57 ? C13 MMV 202 A 1 HETATM 14 C C14 MMV . . . C 3 29.783 13.343 1.762 1 27.69 ? C14 MMV 202 A 1 HETATM 15 O O15 MMV . . . C 3 30.955 14.05 1.199 1 30.57 ? O15 MMV 202 A 1 HETATM 16 C C16 MMV . . . C 3 32.294 13.605 1.378 1 31.3 ? C16 MMV 202 A 1 HETATM 17 C C17 MMV . . . C 3 33.318 14.449 0.749 1 31.74 ? C17 MMV 202 A 1 HETATM 18 C C18 MMV . . . C 3 34.712 14.021 0.915 1 31.78 ? C18 MMV 202 A 1 HETATM 19 C C19 MMV . . . C 3 35.065 12.82 1.661 1 30.98 ? C19 MMV 202 A 1 HETATM 20 C C20 MMV . . . C 3 34.073 12.007 2.262 1 32.43 ? C20 MMV 202 A 1 HETATM 21 C C21 MMV . . . C 3 32.675 12.389 2.131 1 32.21 ? C21 MMV 202 A 1 HETATM 22 C C22 MMV . . . C 3 32.916 15.676 -0.02 1 32.1 ? C22 MMV 202 A 1 HETATM 23 C C23 MMV . . . C 3 34.014 16.593 -0.725 1 32.66 ? C23 MMV 202 A 1 HETATM 24 C C24 MMV . . . C 3 34.677 16.107 -2.103 1 32.09 ? C24 MMV 202 A 1 HETATM 25 O O25 MMV . . . C 3 35.616 16.839 -2.548 1 33.52 ? O25 MMV 202 A 1 HETATM 26 O O26 MMV . . . C 3 34.306 15.033 -2.659 1 31.5 ? O26 MMV 202 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #