data_4DDZ
#
_model_server_result.job_id            q7SPFPXfOxzuP8xaIn4Rxw 
_model_server_result.datetime_utc      '2024-10-19 16:35:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ddz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4DDZ 
#
_exptl.entry_id    4DDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DDZ 
_cell.length_a            98.85 
_cell.length_b            98.85 
_cell.length_c            127.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4DDZ 
_atom_sites.fract_transf_matrix[1][1]    0.010116 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 1 GOL GOL . 
C 2 GOL A 1 402 2 GOL GOL . 
D 3 HOH A 1 501 1 HOH HOH . 
D 3 HOH A 2 502 2 HOH HOH . 
D 3 HOH A 3 503 3 HOH HOH . 
D 3 HOH A 4 504 4 HOH HOH . 
D 3 HOH A 5 505 5 HOH HOH . 
D 3 HOH A 6 506 6 HOH HOH . 
D 3 HOH A 7 507 7 HOH HOH . 
D 3 HOH A 8 508 8 HOH HOH . 
D 3 HOH A 9 509 9 HOH HOH . 
D 3 HOH A 10 510 10 HOH HOH . 
D 3 HOH A 11 511 11 HOH HOH . 
D 3 HOH A 12 512 12 HOH HOH . 
D 3 HOH A 13 513 13 HOH HOH . 
D 3 HOH A 14 514 14 HOH HOH . 
D 3 HOH A 15 515 15 HOH HOH . 
D 3 HOH A 16 516 16 HOH HOH . 
D 3 HOH A 17 517 17 HOH HOH . 
D 3 HOH A 18 518 18 HOH HOH . 
D 3 HOH A 19 519 19 HOH HOH . 
D 3 HOH A 20 520 20 HOH HOH . 
D 3 HOH A 21 521 21 HOH HOH . 
D 3 HOH A 22 522 22 HOH HOH . 
D 3 HOH A 23 523 23 HOH HOH . 
D 3 HOH A 24 524 24 HOH HOH . 
D 3 HOH A 25 525 25 HOH HOH . 
D 3 HOH A 26 526 26 HOH HOH . 
D 3 HOH A 27 527 27 HOH HOH . 
D 3 HOH A 28 528 28 HOH HOH . 
D 3 HOH A 29 529 30 HOH HOH . 
D 3 HOH A 30 530 32 HOH HOH . 
D 3 HOH A 31 531 33 HOH HOH . 
D 3 HOH A 32 532 34 HOH HOH . 
D 3 HOH A 33 533 38 HOH HOH . 
D 3 HOH A 34 534 39 HOH HOH . 
D 3 HOH A 35 535 40 HOH HOH . 
D 3 HOH A 36 536 41 HOH HOH . 
D 3 HOH A 37 537 42 HOH HOH . 
D 3 HOH A 38 538 43 HOH HOH . 
D 3 HOH A 39 539 44 HOH HOH . 
D 3 HOH A 40 540 45 HOH HOH . 
D 3 HOH A 41 541 46 HOH HOH . 
D 3 HOH A 42 542 48 HOH HOH . 
D 3 HOH A 43 543 49 HOH HOH . 
D 3 HOH A 44 544 50 HOH HOH . 
D 3 HOH A 45 545 51 HOH HOH . 
D 3 HOH A 46 546 53 HOH HOH . 
D 3 HOH A 47 547 54 HOH HOH . 
D 3 HOH A 48 548 55 HOH HOH . 
D 3 HOH A 49 549 56 HOH HOH . 
D 3 HOH A 50 550 57 HOH HOH . 
D 3 HOH A 51 551 58 HOH HOH . 
D 3 HOH A 52 552 59 HOH HOH . 
D 3 HOH A 53 553 61 HOH HOH . 
D 3 HOH A 54 554 62 HOH HOH . 
D 3 HOH A 55 555 63 HOH HOH . 
D 3 HOH A 56 556 64 HOH HOH . 
D 3 HOH A 57 557 65 HOH HOH . 
D 3 HOH A 58 558 67 HOH HOH . 
D 3 HOH A 59 559 68 HOH HOH . 
D 3 HOH A 60 560 69 HOH HOH . 
D 3 HOH A 61 561 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . A . B 2 8.347 -1.807 19.489 0.38 75.04 ? C1 GOL 401 A 1 
HETATM 2 C C1 GOL . B . B 2 8.068 -1.663 19.427 0.62 75.65 ? C1 GOL 401 A 1 
HETATM 3 O O1 GOL . A . B 2 7.645 -0.653 19.915 0.38 50.37 ? O1 GOL 401 A 1 
HETATM 4 O O1 GOL . B . B 2 9.222 -1.554 20.241 0.62 48.79 ? O1 GOL 401 A 1 
HETATM 5 C C2 GOL . A . B 2 8.078 -2.03 17.992 0.38 87.2 ? C2 GOL 401 A 1 
HETATM 6 C C2 GOL . B . B 2 8.396 -2.55 18.215 0.62 85.3 ? C2 GOL 401 A 1 
HETATM 7 O O2 GOL . A . B 2 6.686 -2.186 17.772 0.38 89.5 ? O2 GOL 401 A 1 
HETATM 8 O O2 GOL . B . B 2 9.469 -1.985 17.482 0.62 59.73 ? O2 GOL 401 A 1 
HETATM 9 C C3 GOL . A . B 2 8.815 -3.274 17.483 0.38 79.32 ? C3 GOL 401 A 1 
HETATM 10 C C3 GOL . B . B 2 7.177 -2.696 17.298 0.62 89.92 ? C3 GOL 401 A 1 
HETATM 11 O O3 GOL . A . B 2 8.35 -4.446 18.137 0.38 66.96 ? O3 GOL 401 A 1 
HETATM 12 O O3 GOL . B . B 2 6.788 -1.44 16.762 0.62 77.42 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#