data_4DE8 # _model_server_result.job_id AIzAW43pChnR53nB-evgTg _model_server_result.datetime_utc '2024-11-05 00:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4de8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4DE8 # _exptl.entry_id 4DE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 642.931 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DE8 _cell.length_a 73.187 _cell.length_b 73.187 _cell.length_c 163.835 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H67 O4 P' _chem_comp.formula_weight 642.931 _chem_comp.id 0K3 _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C37 C36 0K3 sing 1 n n C36 C38 0K3 sing 2 n n C36 C35 0K3 doub 3 n n C34 C35 0K3 sing 4 n n C34 C33 0K3 sing 5 n n C27 C26 0K3 sing 6 n n C33 C31 0K3 sing 7 n n C29 C28 0K3 sing 8 n n C29 C30 0K3 sing 9 n n C26 C28 0K3 sing 10 n n C26 C25 0K3 doub 11 z n C31 C30 0K3 doub 12 z n C31 C32 0K3 sing 13 n n C25 C24 0K3 sing 14 n n C24 C23 0K3 sing 15 n n C23 C21 0K3 sing 16 n n C22 C21 0K3 sing 17 n n C21 C20 0K3 doub 18 z n C20 C19 0K3 sing 19 n n C19 C18 0K3 sing 20 n n C39 C17 0K3 sing 21 n n C17 C18 0K3 sing 22 n n C17 C16 0K3 doub 23 z n C16 C15 0K3 sing 24 n n C15 C14 0K3 sing 25 n n C14 C12 0K3 sing 26 n n C12 C11 0K3 doub 27 z n C12 C13 0K3 sing 28 n n C8 C7 0K3 sing 29 n n C10 C11 0K3 sing 30 n n C10 C9 0K3 sing 31 n n C9 C7 0K3 sing 32 n n C7 C6 0K3 doub 33 z n C6 C5 0K3 sing 34 n n C5 C4 0K3 sing 35 n n C4 C2 0K3 sing 36 n n C3 C2 0K3 sing 37 n n C2 C1 0K3 doub 38 z n C1 C 0K3 sing 39 n n C O3 0K3 sing 40 n n O3 P 0K3 sing 41 n n P O2 0K3 doub 42 n n P O1 0K3 sing 43 n n P O 0K3 sing 44 n n O H1 0K3 sing 45 n n O1 H2 0K3 sing 46 n n C H3 0K3 sing 47 n n C H4 0K3 sing 48 n n C1 H5 0K3 sing 49 n n C3 H6 0K3 sing 50 n n C3 H7 0K3 sing 51 n n C3 H8 0K3 sing 52 n n C4 H9 0K3 sing 53 n n C4 H10 0K3 sing 54 n n C5 H11 0K3 sing 55 n n C5 H12 0K3 sing 56 n n C6 H13 0K3 sing 57 n n C8 H14 0K3 sing 58 n n C8 H15 0K3 sing 59 n n C8 H16 0K3 sing 60 n n C9 H17 0K3 sing 61 n n C9 H18 0K3 sing 62 n n C10 H19 0K3 sing 63 n n C10 H20 0K3 sing 64 n n C11 H21 0K3 sing 65 n n C13 H22 0K3 sing 66 n n C13 H23 0K3 sing 67 n n C13 H24 0K3 sing 68 n n C14 H25 0K3 sing 69 n n C14 H26 0K3 sing 70 n n C15 H27 0K3 sing 71 n n C15 H28 0K3 sing 72 n n C16 H29 0K3 sing 73 n n C39 H30 0K3 sing 74 n n C39 H31 0K3 sing 75 n n C39 H32 0K3 sing 76 n n C18 H33 0K3 sing 77 n n C18 H34 0K3 sing 78 n n C19 H35 0K3 sing 79 n n C19 H36 0K3 sing 80 n n C20 H37 0K3 sing 81 n n C22 H38 0K3 sing 82 n n C22 H39 0K3 sing 83 n n C22 H40 0K3 sing 84 n n C23 H41 0K3 sing 85 n n C23 H42 0K3 sing 86 n n C24 H43 0K3 sing 87 n n C24 H44 0K3 sing 88 n n C25 H45 0K3 sing 89 n n C27 H46 0K3 sing 90 n n C27 H47 0K3 sing 91 n n C27 H48 0K3 sing 92 n n C28 H49 0K3 sing 93 n n C28 H50 0K3 sing 94 n n C29 H51 0K3 sing 95 n n C29 H52 0K3 sing 96 n n C30 H53 0K3 sing 97 n n C32 H54 0K3 sing 98 n n C32 H55 0K3 sing 99 n n C32 H56 0K3 sing 100 n n C33 H57 0K3 sing 101 n n C33 H58 0K3 sing 102 n n C34 H59 0K3 sing 103 n n C34 H60 0K3 sing 104 n n C35 H61 0K3 sing 105 n n C38 H62 0K3 sing 106 n n C38 H63 0K3 sing 107 n n C38 H64 0K3 sing 108 n n C37 H65 0K3 sing 109 n n C37 H66 0K3 sing 110 n n C37 H67 0K3 sing 111 n n # _atom_sites.entry_id 4DE8 _atom_sites.fract_transf_matrix[1][1] 0.013664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0K3 A 1 501 1 0K3 0K3 . C 3 PEG A 1 502 1 PEG PEG . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 46 HOH HOH . D 4 HOH A 46 646 47 HOH HOH . D 4 HOH A 47 647 48 HOH HOH . D 4 HOH A 48 648 49 HOH HOH . D 4 HOH A 49 649 50 HOH HOH . D 4 HOH A 50 650 51 HOH HOH . D 4 HOH A 51 651 52 HOH HOH . D 4 HOH A 52 652 53 HOH HOH . D 4 HOH A 53 653 54 HOH HOH . D 4 HOH A 54 654 55 HOH HOH . D 4 HOH A 55 655 56 HOH HOH . D 4 HOH A 56 656 58 HOH HOH . D 4 HOH A 57 657 59 HOH HOH . D 4 HOH A 58 658 60 HOH HOH . D 4 HOH A 59 659 61 HOH HOH . D 4 HOH A 60 660 62 HOH HOH . D 4 HOH A 61 661 63 HOH HOH . D 4 HOH A 62 662 64 HOH HOH . D 4 HOH A 63 663 66 HOH HOH . D 4 HOH A 64 664 67 HOH HOH . D 4 HOH A 65 665 68 HOH HOH . D 4 HOH A 66 666 69 HOH HOH . D 4 HOH A 67 667 70 HOH HOH . D 4 HOH A 68 668 71 HOH HOH . D 4 HOH A 69 669 72 HOH HOH . D 4 HOH A 70 670 73 HOH HOH . D 4 HOH A 71 671 74 HOH HOH . D 4 HOH A 72 672 75 HOH HOH . D 4 HOH A 73 673 76 HOH HOH . D 4 HOH A 74 674 77 HOH HOH . D 4 HOH A 75 675 78 HOH HOH . D 4 HOH A 76 676 79 HOH HOH . D 4 HOH A 77 677 80 HOH HOH . D 4 HOH A 78 678 81 HOH HOH . D 4 HOH A 79 679 82 HOH HOH . D 4 HOH A 80 680 83 HOH HOH . D 4 HOH A 81 681 84 HOH HOH . D 4 HOH A 82 682 85 HOH HOH . D 4 HOH A 83 683 86 HOH HOH . D 4 HOH A 84 684 88 HOH HOH . D 4 HOH A 85 685 89 HOH HOH . D 4 HOH A 86 686 90 HOH HOH . D 4 HOH A 87 687 91 HOH HOH . D 4 HOH A 88 688 93 HOH HOH . D 4 HOH A 89 689 94 HOH HOH . D 4 HOH A 90 690 95 HOH HOH . D 4 HOH A 91 691 97 HOH HOH . D 4 HOH A 92 692 99 HOH HOH . D 4 HOH A 93 693 100 HOH HOH . D 4 HOH A 94 694 101 HOH HOH . D 4 HOH A 95 695 103 HOH HOH . D 4 HOH A 96 696 104 HOH HOH . D 4 HOH A 97 697 105 HOH HOH . D 4 HOH A 98 698 106 HOH HOH . D 4 HOH A 99 699 107 HOH HOH . D 4 HOH A 100 700 108 HOH HOH . D 4 HOH A 101 701 109 HOH HOH . D 4 HOH A 102 702 111 HOH HOH . D 4 HOH A 103 703 112 HOH HOH . D 4 HOH A 104 704 113 HOH HOH . D 4 HOH A 105 705 114 HOH HOH . D 4 HOH A 106 706 115 HOH HOH . D 4 HOH A 107 707 116 HOH HOH . D 4 HOH A 108 708 117 HOH HOH . D 4 HOH A 109 709 118 HOH HOH . D 4 HOH A 110 710 119 HOH HOH . D 4 HOH A 111 711 120 HOH HOH . D 4 HOH A 112 712 121 HOH HOH . D 4 HOH A 113 713 122 HOH HOH . D 4 HOH A 114 714 123 HOH HOH . D 4 HOH A 115 715 124 HOH HOH . D 4 HOH A 116 716 125 HOH HOH . D 4 HOH A 117 717 126 HOH HOH . D 4 HOH A 118 718 127 HOH HOH . D 4 HOH A 119 719 128 HOH HOH . D 4 HOH A 120 720 129 HOH HOH . D 4 HOH A 121 721 130 HOH HOH . D 4 HOH A 122 722 131 HOH HOH . D 4 HOH A 123 723 132 HOH HOH . D 4 HOH A 124 724 133 HOH HOH . D 4 HOH A 125 725 134 HOH HOH . D 4 HOH A 126 726 135 HOH HOH . D 4 HOH A 127 727 136 HOH HOH . D 4 HOH A 128 728 137 HOH HOH . D 4 HOH A 129 729 138 HOH HOH . D 4 HOH A 130 730 139 HOH HOH . D 4 HOH A 131 731 140 HOH HOH . D 4 HOH A 132 732 141 HOH HOH . D 4 HOH A 133 733 142 HOH HOH . D 4 HOH A 134 734 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 0K3 . . . B 2 -19.554 9.782 39.037 1 49.37 ? O2 0K3 501 A 1 HETATM 2 P P 0K3 . . . B 2 -21.128 10.128 38.98 1 61.68 ? P 0K3 501 A 1 HETATM 3 O O 0K3 . . . B 2 -21.893 9.148 39.787 1 65.3 ? O 0K3 501 A 1 HETATM 4 O O1 0K3 . . . B 2 -21.41 11.605 39.552 1 66.79 ? O1 0K3 501 A 1 HETATM 5 O O3 0K3 . . . B 2 -21.608 10.027 37.449 1 79.5 ? O3 0K3 501 A 1 HETATM 6 C C 0K3 . . . B 2 -22.805 10.662 37.018 1 75.01 ? C 0K3 501 A 1 HETATM 7 C C1 0K3 . . . B 2 -23.898 9.627 36.968 1 66.31 ? C1 0K3 501 A 1 HETATM 8 C C2 0K3 . . . B 2 -24.455 9.278 35.805 1 51.02 ? C2 0K3 501 A 1 HETATM 9 C C3 0K3 . . . B 2 -25.54 8.243 35.803 1 52.15 ? C3 0K3 501 A 1 HETATM 10 C C4 0K3 . . . B 2 -23.966 9.906 34.52 1 52.74 ? C4 0K3 501 A 1 HETATM 11 C C5 0K3 . . . B 2 -25.143 10.404 33.689 1 48.78 ? C5 0K3 501 A 1 HETATM 12 C C6 0K3 . . . B 2 -24.655 11.319 32.59 1 52.81 ? C6 0K3 501 A 1 HETATM 13 C C7 0K3 . . . B 2 -25.438 11.55 31.526 1 53.31 ? C7 0K3 501 A 1 HETATM 14 C C8 0K3 . . . B 2 -24.982 12.451 30.419 1 44.64 ? C8 0K3 501 A 1 HETATM 15 C C9 0K3 . . . B 2 -26.777 10.859 31.473 1 59.36 ? C9 0K3 501 A 1 HETATM 16 C C10 0K3 . . . B 2 -27.728 11.447 30.44 1 42.89 ? C10 0K3 501 A 1 HETATM 17 C C11 0K3 . . . B 2 -29.093 11.422 31.086 1 43.97 ? C11 0K3 501 A 1 HETATM 18 C C12 0K3 . . . B 2 -30.188 11.047 30.412 1 45.07 ? C12 0K3 501 A 1 HETATM 19 C C13 0K3 . . . B 2 -31.527 11.03 31.089 1 41.6 ? C13 0K3 501 A 1 HETATM 20 C C14 0K3 . . . B 2 -30.062 10.624 28.974 1 44.75 ? C14 0K3 501 A 1 HETATM 21 C C15 0K3 . . . B 2 -31.14 11.277 28.12 1 40.55 ? C15 0K3 501 A 1 HETATM 22 C C16 0K3 . . . B 2 -30.493 11.517 26.781 1 48.08 ? C16 0K3 501 A 1 HETATM 23 C C17 0K3 . . . B 2 -31.216 11.643 25.667 1 53.27 ? C17 0K3 501 A 1 HETATM 24 C C39 0K3 . . . B 2 -30.543 11.877 24.347 1 54.4 ? C39 0K3 501 A 1 HETATM 25 C C18 0K3 . . . B 2 -32.713 11.556 25.727 1 48.44 ? C18 0K3 501 A 1 HETATM 26 C C19 0K3 . . . B 2 -33.189 11.347 24.301 1 56.57 ? C19 0K3 501 A 1 HETATM 27 C C20 0K3 . . . B 2 -34.64 11.728 24.213 1 62.3 ? C20 0K3 501 A 1 HETATM 28 C C21 0K3 . . . B 2 -35.355 11.311 23.166 1 66.35 ? C21 0K3 501 A 1 HETATM 29 C C22 0K3 . . . B 2 -36.799 11.683 23.056 1 72.04 ? C22 0K3 501 A 1 HETATM 30 C C23 0K3 . . . B 2 -34.711 10.469 22.094 1 63.33 ? C23 0K3 501 A 1 HETATM 31 C C24 0K3 . . . B 2 -35.816 9.723 21.359 1 69.52 ? C24 0K3 501 A 1 HETATM 32 C C25 0K3 . . . B 2 -35.728 10.003 19.879 1 69.48 ? C25 0K3 501 A 1 HETATM 33 C C26 0K3 . . . B 2 -36.493 9.306 19.03 1 65.62 ? C26 0K3 501 A 1 HETATM 34 C C27 0K3 . . . B 2 -36.402 9.581 17.558 1 66.85 ? C27 0K3 501 A 1 HETATM 35 C C28 0K3 . . . B 2 -37.432 8.245 19.562 1 52.09 ? C28 0K3 501 A 1 HETATM 36 C C29 0K3 . . . B 2 -38.755 8.293 18.805 1 48.46 ? C29 0K3 501 A 1 HETATM 37 C C30 0K3 . . . B 2 -39.855 8.638 19.778 1 55.33 ? C30 0K3 501 A 1 HETATM 38 C C31 0K3 . . . B 2 -40.954 9.307 19.396 1 66.65 ? C31 0K3 501 A 1 HETATM 39 C C32 0K3 . . . B 2 -42.005 9.617 20.421 1 73.85 ? C32 0K3 501 A 1 HETATM 40 C C33 0K3 . . . B 2 -41.149 9.747 17.96 1 62.61 ? C33 0K3 501 A 1 HETATM 41 C C34 0K3 . . . B 2 -39.928 10.516 17.46 1 59.86 ? C34 0K3 501 A 1 HETATM 42 C C35 0K3 . . . B 2 -40.104 12.008 17.622 1 56.73 ? C35 0K3 501 A 1 HETATM 43 C C36 0K3 . . . B 2 -39.08 12.826 17.333 1 58.56 ? C36 0K3 501 A 1 HETATM 44 C C38 0K3 . . . B 2 -39.226 14.31 17.486 1 65.79 ? C38 0K3 501 A 1 HETATM 45 C C37 0K3 . . . B 2 -37.776 12.256 16.859 1 59.43 ? C37 0K3 501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #