data_4DE8 # _model_server_result.job_id A8fJDrmp587lURDkLMdYSw _model_server_result.datetime_utc '2024-11-05 00:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4de8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4DE8 # _exptl.entry_id 4DE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DE8 _cell.length_a 73.187 _cell.length_b 73.187 _cell.length_c 163.835 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 335 n n C1 C2 PEG sing 336 n n C1 H11 PEG sing 337 n n C1 H12 PEG sing 338 n n O1 HO1 PEG sing 339 n n C2 O2 PEG sing 340 n n C2 H21 PEG sing 341 n n C2 H22 PEG sing 342 n n O2 C3 PEG sing 343 n n C3 C4 PEG sing 344 n n C3 H31 PEG sing 345 n n C3 H32 PEG sing 346 n n C4 O4 PEG sing 347 n n C4 H41 PEG sing 348 n n C4 H42 PEG sing 349 n n O4 HO4 PEG sing 350 n n # _atom_sites.entry_id 4DE8 _atom_sites.fract_transf_matrix[1][1] 0.013664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0K3 A 1 501 1 0K3 0K3 . C 3 PEG A 1 502 1 PEG PEG . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 46 HOH HOH . D 4 HOH A 46 646 47 HOH HOH . D 4 HOH A 47 647 48 HOH HOH . D 4 HOH A 48 648 49 HOH HOH . D 4 HOH A 49 649 50 HOH HOH . D 4 HOH A 50 650 51 HOH HOH . D 4 HOH A 51 651 52 HOH HOH . D 4 HOH A 52 652 53 HOH HOH . D 4 HOH A 53 653 54 HOH HOH . D 4 HOH A 54 654 55 HOH HOH . D 4 HOH A 55 655 56 HOH HOH . D 4 HOH A 56 656 58 HOH HOH . D 4 HOH A 57 657 59 HOH HOH . D 4 HOH A 58 658 60 HOH HOH . D 4 HOH A 59 659 61 HOH HOH . D 4 HOH A 60 660 62 HOH HOH . D 4 HOH A 61 661 63 HOH HOH . D 4 HOH A 62 662 64 HOH HOH . D 4 HOH A 63 663 66 HOH HOH . D 4 HOH A 64 664 67 HOH HOH . D 4 HOH A 65 665 68 HOH HOH . D 4 HOH A 66 666 69 HOH HOH . D 4 HOH A 67 667 70 HOH HOH . D 4 HOH A 68 668 71 HOH HOH . D 4 HOH A 69 669 72 HOH HOH . D 4 HOH A 70 670 73 HOH HOH . D 4 HOH A 71 671 74 HOH HOH . D 4 HOH A 72 672 75 HOH HOH . D 4 HOH A 73 673 76 HOH HOH . D 4 HOH A 74 674 77 HOH HOH . D 4 HOH A 75 675 78 HOH HOH . D 4 HOH A 76 676 79 HOH HOH . D 4 HOH A 77 677 80 HOH HOH . D 4 HOH A 78 678 81 HOH HOH . D 4 HOH A 79 679 82 HOH HOH . D 4 HOH A 80 680 83 HOH HOH . D 4 HOH A 81 681 84 HOH HOH . D 4 HOH A 82 682 85 HOH HOH . D 4 HOH A 83 683 86 HOH HOH . D 4 HOH A 84 684 88 HOH HOH . D 4 HOH A 85 685 89 HOH HOH . D 4 HOH A 86 686 90 HOH HOH . D 4 HOH A 87 687 91 HOH HOH . D 4 HOH A 88 688 93 HOH HOH . D 4 HOH A 89 689 94 HOH HOH . D 4 HOH A 90 690 95 HOH HOH . D 4 HOH A 91 691 97 HOH HOH . D 4 HOH A 92 692 99 HOH HOH . D 4 HOH A 93 693 100 HOH HOH . D 4 HOH A 94 694 101 HOH HOH . D 4 HOH A 95 695 103 HOH HOH . D 4 HOH A 96 696 104 HOH HOH . D 4 HOH A 97 697 105 HOH HOH . D 4 HOH A 98 698 106 HOH HOH . D 4 HOH A 99 699 107 HOH HOH . D 4 HOH A 100 700 108 HOH HOH . D 4 HOH A 101 701 109 HOH HOH . D 4 HOH A 102 702 111 HOH HOH . D 4 HOH A 103 703 112 HOH HOH . D 4 HOH A 104 704 113 HOH HOH . D 4 HOH A 105 705 114 HOH HOH . D 4 HOH A 106 706 115 HOH HOH . D 4 HOH A 107 707 116 HOH HOH . D 4 HOH A 108 708 117 HOH HOH . D 4 HOH A 109 709 118 HOH HOH . D 4 HOH A 110 710 119 HOH HOH . D 4 HOH A 111 711 120 HOH HOH . D 4 HOH A 112 712 121 HOH HOH . D 4 HOH A 113 713 122 HOH HOH . D 4 HOH A 114 714 123 HOH HOH . D 4 HOH A 115 715 124 HOH HOH . D 4 HOH A 116 716 125 HOH HOH . D 4 HOH A 117 717 126 HOH HOH . D 4 HOH A 118 718 127 HOH HOH . D 4 HOH A 119 719 128 HOH HOH . D 4 HOH A 120 720 129 HOH HOH . D 4 HOH A 121 721 130 HOH HOH . D 4 HOH A 122 722 131 HOH HOH . D 4 HOH A 123 723 132 HOH HOH . D 4 HOH A 124 724 133 HOH HOH . D 4 HOH A 125 725 134 HOH HOH . D 4 HOH A 126 726 135 HOH HOH . D 4 HOH A 127 727 136 HOH HOH . D 4 HOH A 128 728 137 HOH HOH . D 4 HOH A 129 729 138 HOH HOH . D 4 HOH A 130 730 139 HOH HOH . D 4 HOH A 131 731 140 HOH HOH . D 4 HOH A 132 732 141 HOH HOH . D 4 HOH A 133 733 142 HOH HOH . D 4 HOH A 134 734 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 -0.216 -6.092 41.877 1 53.19 ? C1 PEG 502 A 1 HETATM 2 O O1 PEG . . . C 3 0.191 -5.527 43.07 1 63.96 ? O1 PEG 502 A 1 HETATM 3 C C2 PEG . . . C 3 -0.017 -5.288 40.638 1 43.49 ? C2 PEG 502 A 1 HETATM 4 O O2 PEG . . . C 3 -0.727 -4.112 40.53 1 39.5 ? O2 PEG 502 A 1 HETATM 5 C C3 PEG . . . C 3 -0.445 -3.239 39.503 1 37.24 ? C3 PEG 502 A 1 HETATM 6 C C4 PEG . . . C 3 -1.028 -1.869 39.576 1 32.27 ? C4 PEG 502 A 1 HETATM 7 O O4 PEG . . . C 3 -0.499 -0.968 40.477 1 31.05 ? O4 PEG 502 A 1 HETATM 8 H H11 PEG . . . C 3 0.259 -6.935 41.767 1 63.83 ? H11 PEG 502 A 1 HETATM 9 H H12 PEG . . . C 3 -1.166 -6.287 41.954 1 63.83 ? H12 PEG 502 A 1 HETATM 10 H HO1 PEG . . . C 3 -0.045 -4.672 43.088 1 76.76 ? HO1 PEG 502 A 1 HETATM 11 H H21 PEG . . . C 3 -0.242 -5.847 39.874 1 52.19 ? H21 PEG 502 A 1 HETATM 12 H H22 PEG . . . C 3 0.929 -5.064 40.582 1 52.19 ? H22 PEG 502 A 1 HETATM 13 H H31 PEG . . . C 3 0.522 -3.147 39.443 1 44.68 ? H31 PEG 502 A 1 HETATM 14 H H32 PEG . . . C 3 -0.758 -3.649 38.678 1 44.68 ? H32 PEG 502 A 1 HETATM 15 H H41 PEG . . . C 3 -1.978 -1.962 39.768 1 38.72 ? H41 PEG 502 A 1 HETATM 16 H H42 PEG . . . C 3 -0.943 -1.472 38.692 1 38.72 ? H42 PEG 502 A 1 HETATM 17 H HO4 PEG . . . C 3 -1.009 -0.243 40.505 1 37.26 ? HO4 PEG 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #