data_4DEA
#
_model_server_result.job_id            kSj3gxKxm6nC40w49WqFIw 
_model_server_result.datetime_utc      '2024-11-13 12:44:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    4DEA 
#
_exptl.entry_id    4DEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              350.328 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4,4'-(pyrimidine-2,4-diyldiimino)dibenzoic acid" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DEA 
_cell.length_a            82.42 
_cell.length_b            82.42 
_cell.length_c            174.1 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H14 N4 O4' 
_chem_comp.formula_weight    350.328 
_chem_comp.id                NHI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4,4'-(pyrimidine-2,4-diyldiimino)dibenzoic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 NHI doub 246 n n 
O02 C01 NHI sing 247 n n 
C01 C19 NHI sing 248 n n 
C09 N01 NHI sing 249 n n 
N01 C12 NHI sing 250 n n 
N01 HN01 NHI sing 251 n n 
N02 C13 NHI doub 252 n y 
N02 C12 NHI sing 253 n y 
O02 HO02 NHI sing 254 n n 
C12 N03 NHI doub 255 n y 
N03 C15 NHI sing 256 n y 
C16 N04 NHI sing 257 n n 
N04 C13 NHI sing 258 n n 
N04 HN04 NHI sing 259 n n 
C06 C05 NHI doub 260 n y 
C05 C10 NHI sing 261 n y 
C05 H05 NHI sing 262 n n 
C11 C06 NHI sing 263 n n 
C06 C07 NHI sing 264 n y 
C07 C08 NHI doub 265 n y 
C07 H07 NHI sing 266 n n 
C08 C09 NHI sing 267 n y 
C08 H08 NHI sing 268 n n 
C10 C09 NHI doub 269 n y 
C10 H10 NHI sing 270 n n 
O25 C11 NHI doub 271 n n 
O26 C11 NHI sing 272 n n 
C13 C14 NHI sing 273 n y 
C14 C15 NHI doub 274 n y 
C14 H14 NHI sing 275 n n 
C15 H15 NHI sing 276 n n 
C21 C16 NHI doub 277 n y 
C17 C16 NHI sing 278 n y 
C18 C17 NHI doub 279 n y 
C17 H17 NHI sing 280 n n 
C19 C18 NHI sing 281 n y 
C18 H18 NHI sing 282 n n 
C19 C20 NHI doub 283 n y 
C20 C21 NHI sing 284 n y 
C20 H20 NHI sing 285 n n 
C21 H21 NHI sing 286 n n 
O26 HO26 NHI sing 287 n n 
#
_atom_sites.entry_id                     4DEA 
_atom_sites.fract_transf_matrix[1][1]    0.012133 
_atom_sites.fract_transf_matrix[1][2]    0.007005 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 501 1 EDO EDO . 
C 2 EDO A 1 502 2 EDO EDO . 
D 2 EDO A 1 503 3 EDO EDO . 
E 3 NHI A 1 504 1 NHI NHI . 
F 4 HOH A 1 601 1 HOH HOH . 
F 4 HOH A 2 602 2 HOH HOH . 
F 4 HOH A 3 603 3 HOH HOH . 
F 4 HOH A 4 604 4 HOH HOH . 
F 4 HOH A 5 605 5 HOH HOH . 
F 4 HOH A 6 606 6 HOH HOH . 
F 4 HOH A 7 607 7 HOH HOH . 
F 4 HOH A 8 608 8 HOH HOH . 
F 4 HOH A 9 609 9 HOH HOH . 
F 4 HOH A 10 610 10 HOH HOH . 
F 4 HOH A 11 611 11 HOH HOH . 
F 4 HOH A 12 612 12 HOH HOH . 
F 4 HOH A 13 613 13 HOH HOH . 
F 4 HOH A 14 614 14 HOH HOH . 
F 4 HOH A 15 615 15 HOH HOH . 
F 4 HOH A 16 616 16 HOH HOH . 
F 4 HOH A 17 617 17 HOH HOH . 
F 4 HOH A 18 618 18 HOH HOH . 
F 4 HOH A 19 619 19 HOH HOH . 
F 4 HOH A 20 620 20 HOH HOH . 
F 4 HOH A 21 621 21 HOH HOH . 
F 4 HOH A 22 622 22 HOH HOH . 
F 4 HOH A 23 623 23 HOH HOH . 
F 4 HOH A 24 624 24 HOH HOH . 
F 4 HOH A 25 625 25 HOH HOH . 
F 4 HOH A 26 626 26 HOH HOH . 
F 4 HOH A 27 627 27 HOH HOH . 
F 4 HOH A 28 628 28 HOH HOH . 
F 4 HOH A 29 629 29 HOH HOH . 
F 4 HOH A 30 630 30 HOH HOH . 
F 4 HOH A 31 631 31 HOH HOH . 
F 4 HOH A 32 632 32 HOH HOH . 
F 4 HOH A 33 633 33 HOH HOH . 
F 4 HOH A 34 634 34 HOH HOH . 
F 4 HOH A 35 635 35 HOH HOH . 
F 4 HOH A 36 636 36 HOH HOH . 
F 4 HOH A 37 637 37 HOH HOH . 
F 4 HOH A 38 638 38 HOH HOH . 
F 4 HOH A 39 639 39 HOH HOH . 
F 4 HOH A 40 640 40 HOH HOH . 
F 4 HOH A 41 641 41 HOH HOH . 
F 4 HOH A 42 642 42 HOH HOH . 
F 4 HOH A 43 643 43 HOH HOH . 
F 4 HOH A 44 644 44 HOH HOH . 
F 4 HOH A 45 645 45 HOH HOH . 
F 4 HOH A 46 646 46 HOH HOH . 
F 4 HOH A 47 647 47 HOH HOH . 
F 4 HOH A 48 648 48 HOH HOH . 
F 4 HOH A 49 649 49 HOH HOH . 
F 4 HOH A 50 650 50 HOH HOH . 
F 4 HOH A 51 651 51 HOH HOH . 
F 4 HOH A 52 652 52 HOH HOH . 
F 4 HOH A 53 653 53 HOH HOH . 
F 4 HOH A 54 654 54 HOH HOH . 
F 4 HOH A 55 655 55 HOH HOH . 
F 4 HOH A 56 656 56 HOH HOH . 
F 4 HOH A 57 657 57 HOH HOH . 
F 4 HOH A 58 658 58 HOH HOH . 
F 4 HOH A 59 659 59 HOH HOH . 
F 4 HOH A 60 660 60 HOH HOH . 
F 4 HOH A 61 661 61 HOH HOH . 
F 4 HOH A 62 662 62 HOH HOH . 
F 4 HOH A 63 663 63 HOH HOH . 
F 4 HOH A 64 664 64 HOH HOH . 
F 4 HOH A 65 665 65 HOH HOH . 
F 4 HOH A 66 666 66 HOH HOH . 
F 4 HOH A 67 667 67 HOH HOH . 
F 4 HOH A 68 668 68 HOH HOH . 
F 4 HOH A 69 669 69 HOH HOH . 
F 4 HOH A 70 670 70 HOH HOH . 
F 4 HOH A 71 671 71 HOH HOH . 
F 4 HOH A 72 672 72 HOH HOH . 
F 4 HOH A 73 673 73 HOH HOH . 
F 4 HOH A 74 674 74 HOH HOH . 
F 4 HOH A 75 675 75 HOH HOH . 
F 4 HOH A 76 676 76 HOH HOH . 
F 4 HOH A 77 677 77 HOH HOH . 
F 4 HOH A 78 678 78 HOH HOH . 
F 4 HOH A 79 679 79 HOH HOH . 
F 4 HOH A 80 680 80 HOH HOH . 
F 4 HOH A 81 681 81 HOH HOH . 
F 4 HOH A 82 682 82 HOH HOH . 
F 4 HOH A 83 683 83 HOH HOH . 
F 4 HOH A 84 684 84 HOH HOH . 
F 4 HOH A 85 685 85 HOH HOH . 
F 4 HOH A 86 686 86 HOH HOH . 
F 4 HOH A 87 687 87 HOH HOH . 
F 4 HOH A 88 688 88 HOH HOH . 
F 4 HOH A 89 689 89 HOH HOH . 
F 4 HOH A 90 690 90 HOH HOH . 
F 4 HOH A 91 691 91 HOH HOH . 
F 4 HOH A 92 692 92 HOH HOH . 
F 4 HOH A 93 693 93 HOH HOH . 
F 4 HOH A 94 694 94 HOH HOH . 
F 4 HOH A 95 695 95 HOH HOH . 
F 4 HOH A 96 696 96 HOH HOH . 
F 4 HOH A 97 697 97 HOH HOH . 
F 4 HOH A 98 698 98 HOH HOH . 
F 4 HOH A 99 699 99 HOH HOH . 
F 4 HOH A 100 700 100 HOH HOH . 
F 4 HOH A 101 701 101 HOH HOH . 
F 4 HOH A 102 702 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 NHI . . . E 3 -6.939 -29.582 1.184 1 42.38 ? C01 NHI 504 A 1 
HETATM 2 N N01 NHI . . . E 3 -3.133 -33.108 6.996 1 30.31 ? N01 NHI 504 A 1 
HETATM 3 O O01 NHI . . . E 3 -5.923 -29.611 0.176 1 45.12 ? O01 NHI 504 A 1 
HETATM 4 N N02 NHI . . . E 3 -4.333 -31.115 6.766 1 30.97 ? N02 NHI 504 A 1 
HETATM 5 O O02 NHI . . . E 3 -8.112 -29.68 0.874 1 43.35 ? O02 NHI 504 A 1 
HETATM 6 N N03 NHI . . . E 3 -3.648 -31.987 8.905 1 32.06 ? N03 NHI 504 A 1 
HETATM 7 N N04 NHI . . . E 3 -5.528 -29.112 6.707 1 36.11 ? N04 NHI 504 A 1 
HETATM 8 C C05 NHI . . . E 3 -3.071 -33.035 3.281 1 30.68 ? C05 NHI 504 A 1 
HETATM 9 C C06 NHI . . . E 3 -1.916 -33.828 3.036 1 34.02 ? C06 NHI 504 A 1 
HETATM 10 C C07 NHI . . . E 3 -1.189 -34.372 4.152 1 32.23 ? C07 NHI 504 A 1 
HETATM 11 C C08 NHI . . . E 3 -1.616 -34.112 5.486 1 32.09 ? C08 NHI 504 A 1 
HETATM 12 C C09 NHI . . . E 3 -2.768 -33.314 5.74 1 31.49 ? C09 NHI 504 A 1 
HETATM 13 C C10 NHI . . . E 3 -3.489 -32.787 4.611 1 31.99 ? C10 NHI 504 A 1 
HETATM 14 C C11 NHI . . . E 3 -1.498 -34.064 1.741 1 34.19 ? C11 NHI 504 A 1 
HETATM 15 C C12 NHI . . . E 3 -3.712 -32.055 7.542 1 30.75 ? C12 NHI 504 A 1 
HETATM 16 C C13 NHI . . . E 3 -4.918 -30.044 7.405 1 32.07 ? C13 NHI 504 A 1 
HETATM 17 C C14 NHI . . . E 3 -4.895 -29.891 8.794 1 32.85 ? C14 NHI 504 A 1 
HETATM 18 C C15 NHI . . . E 3 -4.24 -30.905 9.5 1 30.46 ? C15 NHI 504 A 1 
HETATM 19 C C16 NHI . . . E 3 -5.836 -29.211 5.438 1 38.24 ? C16 NHI 504 A 1 
HETATM 20 C C17 NHI . . . E 3 -7.201 -29.19 5.03 1 39.55 ? C17 NHI 504 A 1 
HETATM 21 C C18 NHI . . . E 3 -7.543 -29.307 3.652 1 39.02 ? C18 NHI 504 A 1 
HETATM 22 C C19 NHI . . . E 3 -6.517 -29.446 2.671 1 41.36 ? C19 NHI 504 A 1 
HETATM 23 C C20 NHI . . . E 3 -5.161 -29.461 3.072 1 38.98 ? C20 NHI 504 A 1 
HETATM 24 C C21 NHI . . . E 3 -4.819 -29.343 4.438 1 38.01 ? C21 NHI 504 A 1 
HETATM 25 O O25 NHI . . . E 3 -2.284 -34.078 0.818 1 35.51 ? O25 NHI 504 A 1 
HETATM 26 O O26 NHI . . . E 3 -0.213 -34.262 1.484 1 35.52 ? O26 NHI 504 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#