data_4DEB # _model_server_result.job_id LPl800cNeb96o-RE-5Ehyw _model_server_result.datetime_utc '2024-11-08 20:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4deb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4DEB # _exptl.entry_id 4DEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.332 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(4-{[3-(trifluoromethyl)phenyl]amino}pyrimidin-2-yl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DEB _cell.length_a 82.44 _cell.length_b 82.44 _cell.length_c 173.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H14 F3 N5 O' _chem_comp.formula_weight 373.332 _chem_comp.id NHJ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(4-{[3-(trifluoromethyl)phenyl]amino}pyrimidin-2-yl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 N01 NHJ sing 246 n n N01 C12 NHJ sing 247 n n N01 HN01 NHJ sing 248 n n N02 C13 NHJ doub 249 n y N02 C12 NHJ sing 250 n y C12 N03 NHJ doub 251 n y N03 C15 NHJ sing 252 n y C16 N04 NHJ sing 253 n n N04 C13 NHJ sing 254 n n N04 HN04 NHJ sing 255 n n N05 C23 NHJ sing 256 n n N05 HN05 NHJ sing 257 n n N05 HN0A NHJ sing 258 n n C07 C06 NHJ doub 259 n y C06 C11 NHJ sing 260 n y C06 H06 NHJ sing 261 n n C08 C07 NHJ sing 262 n y C07 H07 NHJ sing 263 n n C23 C08 NHJ sing 264 n n C08 C09 NHJ doub 265 n y C09 C10 NHJ sing 266 n y C09 H09 NHJ sing 267 n n C10 C11 NHJ doub 268 n y C10 H10 NHJ sing 269 n n C13 C14 NHJ sing 270 n y C14 C15 NHJ doub 271 n y C14 H14 NHJ sing 272 n n C15 H15 NHJ sing 273 n n C17 C16 NHJ doub 274 n y C16 C21 NHJ sing 275 n y C18 C17 NHJ sing 276 n y C17 H17 NHJ sing 277 n n C18 C19 NHJ doub 278 n y C18 H18 NHJ sing 279 n n C19 C20 NHJ sing 280 n y C19 H19 NHJ sing 281 n n C20 C22 NHJ sing 282 n n C20 C21 NHJ doub 283 n y C21 H21 NHJ sing 284 n n F26 C22 NHJ sing 285 n n C22 F27 NHJ sing 286 n n C22 F25 NHJ sing 287 n n O24 C23 NHJ doub 288 n n # _atom_sites.entry_id 4DEB _atom_sites.fract_transf_matrix[1][1] 0.01213 _atom_sites.fract_transf_matrix[1][2] 0.007003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHJ A 1 501 1 NHJ NHJ . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 5 HOH HOH . E 4 HOH A 6 606 6 HOH HOH . E 4 HOH A 7 607 7 HOH HOH . E 4 HOH A 8 608 8 HOH HOH . E 4 HOH A 9 609 9 HOH HOH . E 4 HOH A 10 610 10 HOH HOH . E 4 HOH A 11 611 11 HOH HOH . E 4 HOH A 12 612 12 HOH HOH . E 4 HOH A 13 613 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 NHJ . . . B 2 -2.83 -32.894 6.73 1 59.95 ? N01 NHJ 501 A 1 HETATM 2 N N02 NHJ . . . B 2 -3.816 -30.847 6.336 1 68.66 ? N02 NHJ 501 A 1 HETATM 3 N N03 NHJ . . . B 2 -3.685 -31.829 8.533 1 65.6 ? N03 NHJ 501 A 1 HETATM 4 N N04 NHJ . . . B 2 -4.8 -28.805 6.081 1 75.57 ? N04 NHJ 501 A 1 HETATM 5 N N05 NHJ . . . B 2 -1.824 -33.693 0.496 1 53.28 ? N05 NHJ 501 A 1 HETATM 6 C C06 NHJ . . . B 2 -1.421 -34.06 5.298 1 54.38 ? C06 NHJ 501 A 1 HETATM 7 C C07 NHJ . . . B 2 -1.009 -34.433 4.001 1 53.3 ? C07 NHJ 501 A 1 HETATM 8 C C08 NHJ . . . B 2 -1.673 -33.928 2.864 1 53.41 ? C08 NHJ 501 A 1 HETATM 9 C C09 NHJ . . . B 2 -2.76 -33.037 3.045 1 53.85 ? C09 NHJ 501 A 1 HETATM 10 C C10 NHJ . . . B 2 -3.171 -32.667 4.346 1 54.76 ? C10 NHJ 501 A 1 HETATM 11 C C11 NHJ . . . B 2 -2.498 -33.179 5.494 1 55.61 ? C11 NHJ 501 A 1 HETATM 12 C C12 NHJ . . . B 2 -3.45 -31.844 7.189 1 64.61 ? C12 NHJ 501 A 1 HETATM 13 C C13 NHJ . . . B 2 -4.461 -29.769 6.876 1 71.45 ? C13 NHJ 501 A 1 HETATM 14 C C14 NHJ . . . B 2 -4.753 -29.65 8.244 1 69.78 ? C14 NHJ 501 A 1 HETATM 15 C C15 NHJ . . . B 2 -4.334 -30.727 9.026 1 67.38 ? C15 NHJ 501 A 1 HETATM 16 C C16 NHJ . . . B 2 -5.762 -28.836 5.229 1 79.85 ? C16 NHJ 501 A 1 HETATM 17 C C17 NHJ . . . B 2 -5.548 -29.258 3.87 1 80.91 ? C17 NHJ 501 A 1 HETATM 18 C C18 NHJ . . . B 2 -6.637 -29.267 2.943 1 82.72 ? C18 NHJ 501 A 1 HETATM 19 C C19 NHJ . . . B 2 -7.939 -28.851 3.37 1 84.63 ? C19 NHJ 501 A 1 HETATM 20 C C20 NHJ . . . B 2 -8.142 -28.426 4.734 1 86.58 ? C20 NHJ 501 A 1 HETATM 21 C C21 NHJ . . . B 2 -7.05 -28.426 5.643 1 83.25 ? C21 NHJ 501 A 1 HETATM 22 C C22 NHJ . . . B 2 -9.497 -27.963 5.247 1 88.04 ? C22 NHJ 501 A 1 HETATM 23 C C23 NHJ . . . B 2 -1.276 -34.299 1.598 1 53.76 ? C23 NHJ 501 A 1 HETATM 24 O O24 NHJ . . . B 2 -0.449 -35.185 1.434 1 54.71 ? O24 NHJ 501 A 1 HETATM 25 F F25 NHJ . . . B 2 -9.308 -26.842 6.081 1 88.88 ? F25 NHJ 501 A 1 HETATM 26 F F26 NHJ . . . B 2 -10.329 -27.592 4.184 1 88.92 ? F26 NHJ 501 A 1 HETATM 27 F F27 NHJ . . . B 2 -10.103 -28.995 5.978 1 88.9 ? F27 NHJ 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #