data_4DER # _model_server_result.job_id vSJTSVN884bhNoueLSmNww _model_server_result.datetime_utc '2024-11-22 09:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4der # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4DER # _exptl.entry_id 4DER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DER _cell.length_a 43.152 _cell.length_b 85.132 _cell.length_c 64.458 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DER _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.152 85.132 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id AGI _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Apigenin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAE AGI doub 1 n y CAG CAP AGI sing 2 n y CAE CAM AGI sing 3 n y CAM OAB AGI sing 4 n n CAM CAF AGI doub 5 n y CAF CAH AGI sing 6 n y CAH CAP AGI doub 7 n y CAP CAQ AGI sing 8 n n CAQ OAL AGI sing 9 n n CAQ CAJ AGI doub 10 n n OAL CAS AGI sing 11 n n CAJ CAR AGI sing 12 n n CAR OAA AGI doub 13 n n CAR CAT AGI sing 14 n n CAT CAS AGI doub 15 n y CAT CAO AGI sing 16 n y CAS CAK AGI sing 17 n y CAK CAN AGI doub 18 n y CAN OAC AGI sing 19 n n CAN CAI AGI sing 20 n y CAI CAO AGI doub 21 n y CAO OAD AGI sing 22 n n CAG HAG AGI sing 23 n n CAE HAE AGI sing 24 n n OAB HOAB AGI sing 25 n n CAF HAF AGI sing 26 n n CAH HAH AGI sing 27 n n CAJ HAJ AGI sing 28 n n CAK HAK AGI sing 29 n n OAC HOAC AGI sing 30 n n CAI HAI AGI sing 31 n n OAD HOAD AGI sing 32 n n # _atom_sites.entry_id 4DER _atom_sites.fract_transf_matrix[1][1] 0.023174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AGI A 1 201 1 AGI AGI . D 3 GOL A 1 202 1 GOL GOL . E 2 AGI B 1 201 1 AGI AGI . F 4 HOH A 1 301 2 HOH HOH . F 4 HOH A 2 302 3 HOH HOH . F 4 HOH A 3 303 5 HOH HOH . F 4 HOH A 4 304 6 HOH HOH . F 4 HOH A 5 305 11 HOH HOH . F 4 HOH A 6 306 12 HOH HOH . F 4 HOH A 7 307 13 HOH HOH . F 4 HOH A 8 308 14 HOH HOH . F 4 HOH A 9 309 16 HOH HOH . F 4 HOH A 10 310 17 HOH HOH . F 4 HOH A 11 311 21 HOH HOH . F 4 HOH A 12 312 23 HOH HOH . F 4 HOH A 13 313 24 HOH HOH . F 4 HOH A 14 314 26 HOH HOH . F 4 HOH A 15 315 27 HOH HOH . F 4 HOH A 16 316 28 HOH HOH . F 4 HOH A 17 317 29 HOH HOH . F 4 HOH A 18 318 30 HOH HOH . F 4 HOH A 19 319 31 HOH HOH . F 4 HOH A 20 320 32 HOH HOH . F 4 HOH A 21 321 36 HOH HOH . F 4 HOH A 22 322 38 HOH HOH . F 4 HOH A 23 323 41 HOH HOH . F 4 HOH A 24 324 42 HOH HOH . F 4 HOH A 25 325 43 HOH HOH . F 4 HOH A 26 326 44 HOH HOH . F 4 HOH A 27 327 45 HOH HOH . F 4 HOH A 28 328 46 HOH HOH . F 4 HOH A 29 329 47 HOH HOH . F 4 HOH A 30 330 48 HOH HOH . F 4 HOH A 31 331 49 HOH HOH . F 4 HOH A 32 332 52 HOH HOH . F 4 HOH A 33 333 53 HOH HOH . F 4 HOH A 34 334 55 HOH HOH . F 4 HOH A 35 335 56 HOH HOH . F 4 HOH A 36 336 59 HOH HOH . F 4 HOH A 37 337 61 HOH HOH . F 4 HOH A 38 338 63 HOH HOH . F 4 HOH A 39 339 64 HOH HOH . F 4 HOH A 40 340 66 HOH HOH . F 4 HOH A 41 341 67 HOH HOH . F 4 HOH A 42 342 69 HOH HOH . F 4 HOH A 43 343 70 HOH HOH . F 4 HOH A 44 344 71 HOH HOH . F 4 HOH A 45 345 73 HOH HOH . F 4 HOH A 46 346 74 HOH HOH . F 4 HOH A 47 347 75 HOH HOH . F 4 HOH A 48 348 76 HOH HOH . F 4 HOH A 49 349 77 HOH HOH . F 4 HOH A 50 350 80 HOH HOH . F 4 HOH A 51 351 82 HOH HOH . F 4 HOH A 52 352 83 HOH HOH . F 4 HOH A 53 353 85 HOH HOH . F 4 HOH A 54 354 89 HOH HOH . F 4 HOH A 55 355 90 HOH HOH . F 4 HOH A 56 356 91 HOH HOH . F 4 HOH A 57 357 94 HOH HOH . F 4 HOH A 58 358 95 HOH HOH . F 4 HOH A 59 359 96 HOH HOH . F 4 HOH A 60 360 97 HOH HOH . F 4 HOH A 61 361 100 HOH HOH . F 4 HOH A 62 362 101 HOH HOH . F 4 HOH A 63 363 102 HOH HOH . F 4 HOH A 64 364 103 HOH HOH . F 4 HOH A 65 365 108 HOH HOH . F 4 HOH A 66 366 109 HOH HOH . F 4 HOH A 67 367 110 HOH HOH . F 4 HOH A 68 368 112 HOH HOH . F 4 HOH A 69 369 113 HOH HOH . F 4 HOH A 70 370 117 HOH HOH . F 4 HOH A 71 371 118 HOH HOH . F 4 HOH A 72 372 123 HOH HOH . F 4 HOH A 73 373 124 HOH HOH . F 4 HOH A 74 374 128 HOH HOH . F 4 HOH A 75 375 139 HOH HOH . F 4 HOH A 76 376 142 HOH HOH . F 4 HOH A 77 377 144 HOH HOH . F 4 HOH A 78 378 145 HOH HOH . F 4 HOH A 79 379 147 HOH HOH . F 4 HOH A 80 380 152 HOH HOH . F 4 HOH A 81 381 154 HOH HOH . G 4 HOH B 1 301 1 HOH HOH . G 4 HOH B 2 302 4 HOH HOH . G 4 HOH B 3 303 7 HOH HOH . G 4 HOH B 4 304 8 HOH HOH . G 4 HOH B 5 305 9 HOH HOH . G 4 HOH B 6 306 15 HOH HOH . G 4 HOH B 7 307 18 HOH HOH . G 4 HOH B 8 308 20 HOH HOH . G 4 HOH B 9 309 22 HOH HOH . G 4 HOH B 10 310 25 HOH HOH . G 4 HOH B 11 311 33 HOH HOH . G 4 HOH B 12 312 34 HOH HOH . G 4 HOH B 13 313 37 HOH HOH . G 4 HOH B 14 314 39 HOH HOH . G 4 HOH B 15 315 40 HOH HOH . G 4 HOH B 16 316 50 HOH HOH . G 4 HOH B 17 317 51 HOH HOH . G 4 HOH B 18 318 54 HOH HOH . G 4 HOH B 19 319 57 HOH HOH . G 4 HOH B 20 320 58 HOH HOH . G 4 HOH B 21 321 60 HOH HOH . G 4 HOH B 22 322 65 HOH HOH . G 4 HOH B 23 323 68 HOH HOH . G 4 HOH B 24 324 72 HOH HOH . G 4 HOH B 25 325 79 HOH HOH . G 4 HOH B 26 326 81 HOH HOH . G 4 HOH B 27 327 88 HOH HOH . G 4 HOH B 28 328 93 HOH HOH . G 4 HOH B 29 329 98 HOH HOH . G 4 HOH B 30 330 99 HOH HOH . G 4 HOH B 31 331 104 HOH HOH . G 4 HOH B 32 332 106 HOH HOH . G 4 HOH B 33 333 107 HOH HOH . G 4 HOH B 34 334 111 HOH HOH . G 4 HOH B 35 335 114 HOH HOH . G 4 HOH B 36 336 115 HOH HOH . G 4 HOH B 37 337 116 HOH HOH . G 4 HOH B 38 338 133 HOH HOH . G 4 HOH B 39 339 143 HOH HOH . G 4 HOH B 40 340 146 HOH HOH . G 4 HOH B 41 341 150 HOH HOH . G 4 HOH B 42 342 151 HOH HOH . G 4 HOH B 43 343 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAG AGI . . . E 2 21.01 41.514 56.62 0.4 43.95 ? CAG AGI 201 B 1 HETATM 2 C CAE AGI . . . E 2 21.034 41.491 55.273 0.4 43.51 ? CAE AGI 201 B 1 HETATM 3 C CAM AGI . . . E 2 21.573 42.558 54.619 0.4 43.48 ? CAM AGI 201 B 1 HETATM 4 O OAB AGI . . . E 2 21.585 42.538 53.311 0.4 43.23 ? OAB AGI 201 B 1 HETATM 5 C CAF AGI . . . E 2 22.099 43.644 55.254 0.4 43.54 ? CAF AGI 201 B 1 HETATM 6 C CAH AGI . . . E 2 22.096 43.661 56.602 0.4 43.78 ? CAH AGI 201 B 1 HETATM 7 C CAP AGI . . . E 2 21.542 42.598 57.293 0.4 44.47 ? CAP AGI 201 B 1 HETATM 8 C CAQ AGI . . . E 2 21.527 42.612 58.654 0.4 44.48 ? CAQ AGI 201 B 1 HETATM 9 O OAL AGI . . . E 2 22.319 41.758 59.271 0.4 45.36 ? OAL AGI 201 B 1 HETATM 10 C CAJ AGI . . . E 2 20.712 43.476 59.324 0.4 45.39 ? CAJ AGI 201 B 1 HETATM 11 C CAR AGI . . . E 2 20.685 43.44 60.673 0.4 45.26 ? CAR AGI 201 B 1 HETATM 12 O OAA AGI . . . E 2 19.985 44.226 61.29 0.4 46.27 ? OAA AGI 201 B 1 HETATM 13 C CAT AGI . . . E 2 21.544 42.598 61.305 0.4 45.33 ? CAT AGI 201 B 1 HETATM 14 C CAS AGI . . . E 2 22.35 41.782 60.578 0.4 44.96 ? CAS AGI 201 B 1 HETATM 15 C CAK AGI . . . E 2 23.242 40.946 61.184 0.4 45.34 ? CAK AGI 201 B 1 HETATM 16 C CAN AGI . . . E 2 23.314 40.946 62.558 0.4 44.9 ? CAN AGI 201 B 1 HETATM 17 O OAC AGI . . . E 2 24.206 40.152 63.128 0.4 44.23 ? OAC AGI 201 B 1 HETATM 18 C CAI AGI . . . E 2 22.497 41.773 63.315 0.4 45.46 ? CAI AGI 201 B 1 HETATM 19 C CAO AGI . . . E 2 21.617 42.597 62.679 0.4 45.39 ? CAO AGI 201 B 1 HETATM 20 O OAD AGI . . . E 2 20.817 43.406 63.352 0.4 46.31 ? OAD AGI 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 20 #