data_4DER # _model_server_result.job_id kaOVDrwZ6ZYrZpWSVlxGNA _model_server_result.datetime_utc '2024-11-14 20:33:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4der # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4DER # _exptl.entry_id 4DER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DER _cell.length_a 43.152 _cell.length_b 85.132 _cell.length_c 64.458 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DER _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.152 85.132 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 142 n n C1 C2 GOL sing 143 n n C1 H11 GOL sing 144 n n C1 H12 GOL sing 145 n n O1 HO1 GOL sing 146 n n C2 O2 GOL sing 147 n n C2 C3 GOL sing 148 n n C2 H2 GOL sing 149 n n O2 HO2 GOL sing 150 n n C3 O3 GOL sing 151 n n C3 H31 GOL sing 152 n n C3 H32 GOL sing 153 n n O3 HO3 GOL sing 154 n n # _atom_sites.entry_id 4DER _atom_sites.fract_transf_matrix[1][1] 0.023174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AGI A 1 201 1 AGI AGI . D 3 GOL A 1 202 1 GOL GOL . E 2 AGI B 1 201 1 AGI AGI . F 4 HOH A 1 301 2 HOH HOH . F 4 HOH A 2 302 3 HOH HOH . F 4 HOH A 3 303 5 HOH HOH . F 4 HOH A 4 304 6 HOH HOH . F 4 HOH A 5 305 11 HOH HOH . F 4 HOH A 6 306 12 HOH HOH . F 4 HOH A 7 307 13 HOH HOH . F 4 HOH A 8 308 14 HOH HOH . F 4 HOH A 9 309 16 HOH HOH . F 4 HOH A 10 310 17 HOH HOH . F 4 HOH A 11 311 21 HOH HOH . F 4 HOH A 12 312 23 HOH HOH . F 4 HOH A 13 313 24 HOH HOH . F 4 HOH A 14 314 26 HOH HOH . F 4 HOH A 15 315 27 HOH HOH . F 4 HOH A 16 316 28 HOH HOH . F 4 HOH A 17 317 29 HOH HOH . F 4 HOH A 18 318 30 HOH HOH . F 4 HOH A 19 319 31 HOH HOH . F 4 HOH A 20 320 32 HOH HOH . F 4 HOH A 21 321 36 HOH HOH . F 4 HOH A 22 322 38 HOH HOH . F 4 HOH A 23 323 41 HOH HOH . F 4 HOH A 24 324 42 HOH HOH . F 4 HOH A 25 325 43 HOH HOH . F 4 HOH A 26 326 44 HOH HOH . F 4 HOH A 27 327 45 HOH HOH . F 4 HOH A 28 328 46 HOH HOH . F 4 HOH A 29 329 47 HOH HOH . F 4 HOH A 30 330 48 HOH HOH . F 4 HOH A 31 331 49 HOH HOH . F 4 HOH A 32 332 52 HOH HOH . F 4 HOH A 33 333 53 HOH HOH . F 4 HOH A 34 334 55 HOH HOH . F 4 HOH A 35 335 56 HOH HOH . F 4 HOH A 36 336 59 HOH HOH . F 4 HOH A 37 337 61 HOH HOH . F 4 HOH A 38 338 63 HOH HOH . F 4 HOH A 39 339 64 HOH HOH . F 4 HOH A 40 340 66 HOH HOH . F 4 HOH A 41 341 67 HOH HOH . F 4 HOH A 42 342 69 HOH HOH . F 4 HOH A 43 343 70 HOH HOH . F 4 HOH A 44 344 71 HOH HOH . F 4 HOH A 45 345 73 HOH HOH . F 4 HOH A 46 346 74 HOH HOH . F 4 HOH A 47 347 75 HOH HOH . F 4 HOH A 48 348 76 HOH HOH . F 4 HOH A 49 349 77 HOH HOH . F 4 HOH A 50 350 80 HOH HOH . F 4 HOH A 51 351 82 HOH HOH . F 4 HOH A 52 352 83 HOH HOH . F 4 HOH A 53 353 85 HOH HOH . F 4 HOH A 54 354 89 HOH HOH . F 4 HOH A 55 355 90 HOH HOH . F 4 HOH A 56 356 91 HOH HOH . F 4 HOH A 57 357 94 HOH HOH . F 4 HOH A 58 358 95 HOH HOH . F 4 HOH A 59 359 96 HOH HOH . F 4 HOH A 60 360 97 HOH HOH . F 4 HOH A 61 361 100 HOH HOH . F 4 HOH A 62 362 101 HOH HOH . F 4 HOH A 63 363 102 HOH HOH . F 4 HOH A 64 364 103 HOH HOH . F 4 HOH A 65 365 108 HOH HOH . F 4 HOH A 66 366 109 HOH HOH . F 4 HOH A 67 367 110 HOH HOH . F 4 HOH A 68 368 112 HOH HOH . F 4 HOH A 69 369 113 HOH HOH . F 4 HOH A 70 370 117 HOH HOH . F 4 HOH A 71 371 118 HOH HOH . F 4 HOH A 72 372 123 HOH HOH . F 4 HOH A 73 373 124 HOH HOH . F 4 HOH A 74 374 128 HOH HOH . F 4 HOH A 75 375 139 HOH HOH . F 4 HOH A 76 376 142 HOH HOH . F 4 HOH A 77 377 144 HOH HOH . F 4 HOH A 78 378 145 HOH HOH . F 4 HOH A 79 379 147 HOH HOH . F 4 HOH A 80 380 152 HOH HOH . F 4 HOH A 81 381 154 HOH HOH . G 4 HOH B 1 301 1 HOH HOH . G 4 HOH B 2 302 4 HOH HOH . G 4 HOH B 3 303 7 HOH HOH . G 4 HOH B 4 304 8 HOH HOH . G 4 HOH B 5 305 9 HOH HOH . G 4 HOH B 6 306 15 HOH HOH . G 4 HOH B 7 307 18 HOH HOH . G 4 HOH B 8 308 20 HOH HOH . G 4 HOH B 9 309 22 HOH HOH . G 4 HOH B 10 310 25 HOH HOH . G 4 HOH B 11 311 33 HOH HOH . G 4 HOH B 12 312 34 HOH HOH . G 4 HOH B 13 313 37 HOH HOH . G 4 HOH B 14 314 39 HOH HOH . G 4 HOH B 15 315 40 HOH HOH . G 4 HOH B 16 316 50 HOH HOH . G 4 HOH B 17 317 51 HOH HOH . G 4 HOH B 18 318 54 HOH HOH . G 4 HOH B 19 319 57 HOH HOH . G 4 HOH B 20 320 58 HOH HOH . G 4 HOH B 21 321 60 HOH HOH . G 4 HOH B 22 322 65 HOH HOH . G 4 HOH B 23 323 68 HOH HOH . G 4 HOH B 24 324 72 HOH HOH . G 4 HOH B 25 325 79 HOH HOH . G 4 HOH B 26 326 81 HOH HOH . G 4 HOH B 27 327 88 HOH HOH . G 4 HOH B 28 328 93 HOH HOH . G 4 HOH B 29 329 98 HOH HOH . G 4 HOH B 30 330 99 HOH HOH . G 4 HOH B 31 331 104 HOH HOH . G 4 HOH B 32 332 106 HOH HOH . G 4 HOH B 33 333 107 HOH HOH . G 4 HOH B 34 334 111 HOH HOH . G 4 HOH B 35 335 114 HOH HOH . G 4 HOH B 36 336 115 HOH HOH . G 4 HOH B 37 337 116 HOH HOH . G 4 HOH B 38 338 133 HOH HOH . G 4 HOH B 39 339 143 HOH HOH . G 4 HOH B 40 340 146 HOH HOH . G 4 HOH B 41 341 150 HOH HOH . G 4 HOH B 42 342 151 HOH HOH . G 4 HOH B 43 343 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -0.696 22.787 37.88 1 54.5 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 0.4 22.311 38.621 1 57.36 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 -0.185 23.879 36.961 1 52.95 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 -0.278 23.444 35.62 1 52.33 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 -0.988 25.151 37.226 1 53.33 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 -1.778 25.511 36.112 1 55.02 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #