data_4DES # _model_server_result.job_id WnwSF-7CnBa-cFZL-cvhwg _model_server_result.datetime_utc '2024-11-15 00:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4des # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4DES # _exptl.entry_id 4DES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description chrysin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DES _cell.length_a 42.476 _cell.length_b 83.286 _cell.length_c 62.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DES _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 42.476 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H10 O4' _chem_comp.formula_weight 254.237 _chem_comp.id 57D _chem_comp.mon_nstd_flag . _chem_comp.name chrysin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5,7-dihydroxy-2-phenyl-4H-chromen-4-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 57D doub 1 n n C2 O1 57D sing 2 n n C2 C1' 57D sing 3 n n C3 C4 57D sing 4 n n C4 C5 57D sing 5 n n C4 O4 57D doub 6 n n C5 C6 57D doub 7 n y C5 C10 57D sing 8 n y C6 C7 57D sing 9 n y C6 O5 57D sing 10 n n C7 C8 57D doub 11 n y C8 C9 57D sing 12 n y C8 O7 57D sing 13 n n C9 C10 57D doub 14 n y C10 O1 57D sing 15 n n C2' C3' 57D doub 16 n y C2' C1' 57D sing 17 n y C3' C4' 57D sing 18 n y C4' C5' 57D doub 19 n y C5' C6' 57D sing 20 n y C6' C1' 57D doub 21 n y C3 H3 57D sing 22 n n C7 H7 57D sing 23 n n C9 H9 57D sing 24 n n O5 HO5 57D sing 25 n n O7 HO7 57D sing 26 n n C2' H2' 57D sing 27 n n C3' H3' 57D sing 28 n n C4' H4' 57D sing 29 n n C5' H5' 57D sing 30 n n C6' H6' 57D sing 31 n n # _atom_sites.entry_id 4DES _atom_sites.fract_transf_matrix[1][1] 0.023543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 57D A 1 201 1 57D DRG . D 2 57D B 1 201 1 57D DRG . E 3 HOH A 1 301 1 HOH HOH . E 3 HOH A 2 302 2 HOH HOH . E 3 HOH A 3 303 6 HOH HOH . E 3 HOH A 4 304 8 HOH HOH . E 3 HOH A 5 305 9 HOH HOH . E 3 HOH A 6 306 10 HOH HOH . E 3 HOH A 7 307 12 HOH HOH . E 3 HOH A 8 308 14 HOH HOH . E 3 HOH A 9 309 16 HOH HOH . E 3 HOH A 10 310 19 HOH HOH . E 3 HOH A 11 311 20 HOH HOH . E 3 HOH A 12 312 21 HOH HOH . E 3 HOH A 13 313 22 HOH HOH . E 3 HOH A 14 314 23 HOH HOH . E 3 HOH A 15 315 24 HOH HOH . E 3 HOH A 16 316 26 HOH HOH . E 3 HOH A 17 317 28 HOH HOH . E 3 HOH A 18 318 29 HOH HOH . E 3 HOH A 19 319 30 HOH HOH . E 3 HOH A 20 320 31 HOH HOH . E 3 HOH A 21 321 35 HOH HOH . E 3 HOH A 22 322 36 HOH HOH . E 3 HOH A 23 323 37 HOH HOH . E 3 HOH A 24 324 38 HOH HOH . E 3 HOH A 25 325 39 HOH HOH . E 3 HOH A 26 326 42 HOH HOH . E 3 HOH A 27 327 43 HOH HOH . E 3 HOH A 28 328 46 HOH HOH . E 3 HOH A 29 329 47 HOH HOH . E 3 HOH A 30 330 48 HOH HOH . E 3 HOH A 31 331 49 HOH HOH . E 3 HOH A 32 332 50 HOH HOH . E 3 HOH A 33 333 51 HOH HOH . E 3 HOH A 34 334 52 HOH HOH . E 3 HOH A 35 335 54 HOH HOH . E 3 HOH A 36 336 55 HOH HOH . E 3 HOH A 37 337 58 HOH HOH . E 3 HOH A 38 338 59 HOH HOH . E 3 HOH A 39 339 61 HOH HOH . E 3 HOH A 40 340 62 HOH HOH . E 3 HOH A 41 341 63 HOH HOH . E 3 HOH A 42 342 65 HOH HOH . E 3 HOH A 43 343 66 HOH HOH . E 3 HOH A 44 344 67 HOH HOH . E 3 HOH A 45 345 68 HOH HOH . E 3 HOH A 46 346 69 HOH HOH . E 3 HOH A 47 347 73 HOH HOH . E 3 HOH A 48 348 75 HOH HOH . E 3 HOH A 49 349 76 HOH HOH . E 3 HOH A 50 350 77 HOH HOH . E 3 HOH A 51 351 78 HOH HOH . E 3 HOH A 52 352 81 HOH HOH . E 3 HOH A 53 353 82 HOH HOH . E 3 HOH A 54 354 85 HOH HOH . E 3 HOH A 55 355 89 HOH HOH . E 3 HOH A 56 356 91 HOH HOH . E 3 HOH A 57 357 92 HOH HOH . E 3 HOH A 58 358 93 HOH HOH . E 3 HOH A 59 359 96 HOH HOH . E 3 HOH A 60 360 97 HOH HOH . E 3 HOH A 61 361 100 HOH HOH . E 3 HOH A 62 362 101 HOH HOH . E 3 HOH A 63 363 102 HOH HOH . E 3 HOH A 64 364 103 HOH HOH . E 3 HOH A 65 365 107 HOH HOH . E 3 HOH A 66 366 109 HOH HOH . E 3 HOH A 67 367 110 HOH HOH . E 3 HOH A 68 368 112 HOH HOH . E 3 HOH A 69 369 115 HOH HOH . E 3 HOH A 70 370 116 HOH HOH . E 3 HOH A 71 371 117 HOH HOH . E 3 HOH A 72 372 118 HOH HOH . E 3 HOH A 73 373 120 HOH HOH . E 3 HOH A 74 374 122 HOH HOH . E 3 HOH A 75 375 123 HOH HOH . E 3 HOH A 76 376 124 HOH HOH . E 3 HOH A 77 377 125 HOH HOH . E 3 HOH A 78 378 129 HOH HOH . E 3 HOH A 79 379 130 HOH HOH . E 3 HOH A 80 380 133 HOH HOH . E 3 HOH A 81 381 134 HOH HOH . E 3 HOH A 82 382 136 HOH HOH . E 3 HOH A 83 383 140 HOH HOH . E 3 HOH A 84 384 144 HOH HOH . E 3 HOH A 85 385 145 HOH HOH . E 3 HOH A 86 386 147 HOH HOH . E 3 HOH A 87 387 161 HOH HOH . E 3 HOH A 88 388 163 HOH HOH . E 3 HOH A 89 389 164 HOH HOH . E 3 HOH A 90 390 165 HOH HOH . E 3 HOH A 91 391 167 HOH HOH . E 3 HOH A 92 392 169 HOH HOH . E 3 HOH A 93 393 170 HOH HOH . E 3 HOH A 94 394 173 HOH HOH . E 3 HOH A 95 395 72 HOH HOH . E 3 HOH A 96 396 99 HOH HOH . F 3 HOH B 1 301 3 HOH HOH . F 3 HOH B 2 302 4 HOH HOH . F 3 HOH B 3 303 5 HOH HOH . F 3 HOH B 4 304 7 HOH HOH . F 3 HOH B 5 305 11 HOH HOH . F 3 HOH B 6 306 13 HOH HOH . F 3 HOH B 7 307 15 HOH HOH . F 3 HOH B 8 308 17 HOH HOH . F 3 HOH B 9 309 18 HOH HOH . F 3 HOH B 10 310 25 HOH HOH . F 3 HOH B 11 311 27 HOH HOH . F 3 HOH B 12 312 32 HOH HOH . F 3 HOH B 13 313 33 HOH HOH . F 3 HOH B 14 314 34 HOH HOH . F 3 HOH B 15 315 40 HOH HOH . F 3 HOH B 16 316 41 HOH HOH . F 3 HOH B 17 317 44 HOH HOH . F 3 HOH B 18 318 45 HOH HOH . F 3 HOH B 19 319 53 HOH HOH . F 3 HOH B 20 320 56 HOH HOH . F 3 HOH B 21 321 57 HOH HOH . F 3 HOH B 22 322 60 HOH HOH . F 3 HOH B 23 323 64 HOH HOH . F 3 HOH B 24 324 70 HOH HOH . F 3 HOH B 25 325 71 HOH HOH . F 3 HOH B 26 326 74 HOH HOH . F 3 HOH B 27 327 79 HOH HOH . F 3 HOH B 28 328 80 HOH HOH . F 3 HOH B 29 329 83 HOH HOH . F 3 HOH B 30 330 84 HOH HOH . F 3 HOH B 31 331 86 HOH HOH . F 3 HOH B 32 332 87 HOH HOH . F 3 HOH B 33 333 88 HOH HOH . F 3 HOH B 34 334 90 HOH HOH . F 3 HOH B 35 335 94 HOH HOH . F 3 HOH B 36 336 95 HOH HOH . F 3 HOH B 37 337 98 HOH HOH . F 3 HOH B 38 338 104 HOH HOH . F 3 HOH B 39 339 105 HOH HOH . F 3 HOH B 40 340 106 HOH HOH . F 3 HOH B 41 341 108 HOH HOH . F 3 HOH B 42 342 111 HOH HOH . F 3 HOH B 43 343 113 HOH HOH . F 3 HOH B 44 344 114 HOH HOH . F 3 HOH B 45 345 119 HOH HOH . F 3 HOH B 46 346 121 HOH HOH . F 3 HOH B 47 347 126 HOH HOH . F 3 HOH B 48 348 127 HOH HOH . F 3 HOH B 49 349 128 HOH HOH . F 3 HOH B 50 350 131 HOH HOH . F 3 HOH B 51 351 132 HOH HOH . F 3 HOH B 52 352 135 HOH HOH . F 3 HOH B 53 353 137 HOH HOH . F 3 HOH B 54 354 138 HOH HOH . F 3 HOH B 55 355 139 HOH HOH . F 3 HOH B 56 356 141 HOH HOH . F 3 HOH B 57 357 142 HOH HOH . F 3 HOH B 58 358 143 HOH HOH . F 3 HOH B 59 359 149 HOH HOH . F 3 HOH B 60 360 160 HOH HOH . F 3 HOH B 61 361 162 HOH HOH . F 3 HOH B 62 362 166 HOH HOH . F 3 HOH B 63 363 171 HOH HOH . F 3 HOH B 64 364 172 HOH HOH . F 3 HOH B 65 365 174 HOH HOH . F 3 HOH B 66 366 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 57D . . . D 2 20.623 0.087 -24.227 0.5 24.25 ? C2 57D 201 B 1 HETATM 2 C C3 57D . . . D 2 19.644 -0.897 -24.291 0.5 23.96 ? C3 57D 201 B 1 HETATM 3 C C4 57D . . . D 2 19.305 -1.448 -25.515 0.5 24.22 ? C4 57D 201 B 1 HETATM 4 C C5 57D . . . D 2 19.957 -0.999 -26.65 0.5 25.03 ? C5 57D 201 B 1 HETATM 5 C C6 57D . . . D 2 19.635 -1.535 -27.892 0.5 26 ? C6 57D 201 B 1 HETATM 6 C C7 57D . . . D 2 20.287 -1.087 -29.034 0.5 25.96 ? C7 57D 201 B 1 HETATM 7 C C8 57D . . . D 2 21.261 -0.101 -28.931 0.5 26.31 ? C8 57D 201 B 1 HETATM 8 C C9 57D . . . D 2 21.58 0.433 -27.688 0.5 26.09 ? C9 57D 201 B 1 HETATM 9 C C10 57D . . . D 2 20.931 -0.012 -26.542 0.5 25.8 ? C10 57D 201 B 1 HETATM 10 O O1 57D . . . D 2 21.275 0.54 -25.339 0.5 24.61 ? O1 57D 201 B 1 HETATM 11 O O4 57D . . . D 2 18.441 -2.32 -25.592 0.5 22.38 ? O4 57D 201 B 1 HETATM 12 O O5 57D . . . D 2 18.681 -2.5 -27.988 0.5 27.47 ? O5 57D 201 B 1 HETATM 13 O O7 57D . . . D 2 21.902 0.34 -30.046 0.5 26.69 ? O7 57D 201 B 1 HETATM 14 C C2' 57D . . . D 2 21.092 -0.2 -21.883 0.5 23.8 ? C2' 57D 201 B 1 HETATM 15 C C3' 57D . . . D 2 21.419 0.342 -20.645 0.5 23.34 ? C3' 57D 201 B 1 HETATM 16 C C4' 57D . . . D 2 21.606 1.713 -20.515 0.5 22.3 ? C4' 57D 201 B 1 HETATM 17 C C5' 57D . . . D 2 21.466 2.542 -21.621 0.5 21.88 ? C5' 57D 201 B 1 HETATM 18 C C6' 57D . . . D 2 21.138 2 -22.859 0.5 21.76 ? C6' 57D 201 B 1 HETATM 19 C C1' 57D . . . D 2 20.951 0.629 -22.989 0.5 23.24 ? C1' 57D 201 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #