data_4DET # _model_server_result.job_id kjV0SE2EyGgb6JH8UMcxZg _model_server_result.datetime_utc '2024-10-18 16:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4det # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4DET # _exptl.entry_id 4DET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DET _cell.length_a 43.326 _cell.length_b 85.666 _cell.length_c 64.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DET _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 43.326 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id KMP _chem_comp.mon_nstd_flag . _chem_comp.name 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KAEMPHEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KMP doub 154 n y C1 C6 KMP sing 155 n y C1 H1 KMP sing 156 n n C2 C3 KMP sing 157 n y C2 O30 KMP sing 158 n n C3 C4 KMP doub 159 n y C3 C9 KMP sing 160 n y C4 C5 KMP sing 161 n y C4 O12 KMP sing 162 n y C5 C6 KMP doub 163 n y C5 H5 KMP sing 164 n n C6 O29 KMP sing 165 n n C9 C10 KMP sing 166 n y C9 O13 KMP doub 167 n n C10 C11 KMP doub 168 n y C10 O27 KMP sing 169 n n C11 C14 KMP sing 170 n y C11 O12 KMP sing 171 n y C14 C15 KMP doub 172 n y C14 C19 KMP sing 173 n y C15 C16 KMP sing 174 n y C15 H15 KMP sing 175 n n C16 C17 KMP doub 176 n y C16 H16 KMP sing 177 n n C17 C18 KMP sing 178 n y C17 O24 KMP sing 179 n n C18 C19 KMP doub 180 n y C18 H18 KMP sing 181 n n C19 H19 KMP sing 182 n n O24 H24 KMP sing 183 n n O27 H27 KMP sing 184 n n O29 H29 KMP sing 185 n n O30 H30 KMP sing 186 n n # _atom_sites.entry_id 4DET _atom_sites.fract_transf_matrix[1][1] 0.023081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KMP A 1 201 1 KMP KAE . D 2 KMP B 1 201 1 KMP KAE . E 3 HOH A 1 301 1 HOH HOH . E 3 HOH A 2 302 2 HOH HOH . E 3 HOH A 3 303 4 HOH HOH . E 3 HOH A 4 304 7 HOH HOH . E 3 HOH A 5 305 8 HOH HOH . E 3 HOH A 6 306 9 HOH HOH . E 3 HOH A 7 307 13 HOH HOH . E 3 HOH A 8 308 14 HOH HOH . E 3 HOH A 9 309 15 HOH HOH . E 3 HOH A 10 310 16 HOH HOH . E 3 HOH A 11 311 17 HOH HOH . E 3 HOH A 12 312 19 HOH HOH . E 3 HOH A 13 313 21 HOH HOH . E 3 HOH A 14 314 22 HOH HOH . E 3 HOH A 15 315 23 HOH HOH . E 3 HOH A 16 316 25 HOH HOH . E 3 HOH A 17 317 27 HOH HOH . E 3 HOH A 18 318 28 HOH HOH . E 3 HOH A 19 319 29 HOH HOH . E 3 HOH A 20 320 30 HOH HOH . E 3 HOH A 21 321 31 HOH HOH . E 3 HOH A 22 322 34 HOH HOH . E 3 HOH A 23 323 35 HOH HOH . E 3 HOH A 24 324 36 HOH HOH . E 3 HOH A 25 325 37 HOH HOH . E 3 HOH A 26 326 39 HOH HOH . E 3 HOH A 27 327 40 HOH HOH . E 3 HOH A 28 328 41 HOH HOH . E 3 HOH A 29 329 43 HOH HOH . E 3 HOH A 30 330 47 HOH HOH . E 3 HOH A 31 331 48 HOH HOH . E 3 HOH A 32 332 50 HOH HOH . E 3 HOH A 33 333 51 HOH HOH . E 3 HOH A 34 334 53 HOH HOH . E 3 HOH A 35 335 54 HOH HOH . E 3 HOH A 36 336 55 HOH HOH . E 3 HOH A 37 337 56 HOH HOH . E 3 HOH A 38 338 57 HOH HOH . E 3 HOH A 39 339 58 HOH HOH . E 3 HOH A 40 340 59 HOH HOH . E 3 HOH A 41 341 60 HOH HOH . E 3 HOH A 42 342 63 HOH HOH . E 3 HOH A 43 343 65 HOH HOH . E 3 HOH A 44 344 66 HOH HOH . E 3 HOH A 45 345 67 HOH HOH . E 3 HOH A 46 346 68 HOH HOH . E 3 HOH A 47 347 72 HOH HOH . E 3 HOH A 48 348 73 HOH HOH . E 3 HOH A 49 349 75 HOH HOH . E 3 HOH A 50 350 77 HOH HOH . E 3 HOH A 51 351 78 HOH HOH . E 3 HOH A 52 352 79 HOH HOH . E 3 HOH A 53 353 80 HOH HOH . E 3 HOH A 54 354 85 HOH HOH . E 3 HOH A 55 355 86 HOH HOH . E 3 HOH A 56 356 87 HOH HOH . E 3 HOH A 57 357 89 HOH HOH . E 3 HOH A 58 358 91 HOH HOH . E 3 HOH A 59 359 99 HOH HOH . E 3 HOH A 60 360 102 HOH HOH . E 3 HOH A 61 361 107 HOH HOH . E 3 HOH A 62 362 109 HOH HOH . E 3 HOH A 63 363 110 HOH HOH . E 3 HOH A 64 364 111 HOH HOH . E 3 HOH A 65 365 114 HOH HOH . E 3 HOH A 66 366 115 HOH HOH . E 3 HOH A 67 367 116 HOH HOH . E 3 HOH A 68 368 119 HOH HOH . E 3 HOH A 69 369 120 HOH HOH . E 3 HOH A 70 370 122 HOH HOH . E 3 HOH A 71 371 125 HOH HOH . E 3 HOH A 72 372 128 HOH HOH . E 3 HOH A 73 373 129 HOH HOH . E 3 HOH A 74 374 130 HOH HOH . E 3 HOH A 75 375 131 HOH HOH . E 3 HOH A 76 376 135 HOH HOH . E 3 HOH A 77 377 136 HOH HOH . E 3 HOH A 78 378 138 HOH HOH . E 3 HOH A 79 379 140 HOH HOH . F 3 HOH B 1 301 3 HOH HOH . F 3 HOH B 2 302 5 HOH HOH . F 3 HOH B 3 303 6 HOH HOH . F 3 HOH B 4 304 10 HOH HOH . F 3 HOH B 5 305 11 HOH HOH . F 3 HOH B 6 306 12 HOH HOH . F 3 HOH B 7 307 18 HOH HOH . F 3 HOH B 8 308 20 HOH HOH . F 3 HOH B 9 309 24 HOH HOH . F 3 HOH B 10 310 26 HOH HOH . F 3 HOH B 11 311 32 HOH HOH . F 3 HOH B 12 312 33 HOH HOH . F 3 HOH B 13 313 38 HOH HOH . F 3 HOH B 14 314 42 HOH HOH . F 3 HOH B 15 315 44 HOH HOH . F 3 HOH B 16 316 45 HOH HOH . F 3 HOH B 17 317 46 HOH HOH . F 3 HOH B 18 318 49 HOH HOH . F 3 HOH B 19 319 52 HOH HOH . F 3 HOH B 20 320 61 HOH HOH . F 3 HOH B 21 321 62 HOH HOH . F 3 HOH B 22 322 64 HOH HOH . F 3 HOH B 23 323 69 HOH HOH . F 3 HOH B 24 324 70 HOH HOH . F 3 HOH B 25 325 71 HOH HOH . F 3 HOH B 26 326 74 HOH HOH . F 3 HOH B 27 327 76 HOH HOH . F 3 HOH B 28 328 81 HOH HOH . F 3 HOH B 29 329 82 HOH HOH . F 3 HOH B 30 330 83 HOH HOH . F 3 HOH B 31 331 84 HOH HOH . F 3 HOH B 32 332 88 HOH HOH . F 3 HOH B 33 333 90 HOH HOH . F 3 HOH B 34 334 92 HOH HOH . F 3 HOH B 35 335 93 HOH HOH . F 3 HOH B 36 336 94 HOH HOH . F 3 HOH B 37 337 95 HOH HOH . F 3 HOH B 38 338 96 HOH HOH . F 3 HOH B 39 339 97 HOH HOH . F 3 HOH B 40 340 98 HOH HOH . F 3 HOH B 41 341 100 HOH HOH . F 3 HOH B 42 342 101 HOH HOH . F 3 HOH B 43 343 103 HOH HOH . F 3 HOH B 44 344 104 HOH HOH . F 3 HOH B 45 345 105 HOH HOH . F 3 HOH B 46 346 106 HOH HOH . F 3 HOH B 47 347 108 HOH HOH . F 3 HOH B 48 348 112 HOH HOH . F 3 HOH B 49 349 117 HOH HOH . F 3 HOH B 50 350 118 HOH HOH . F 3 HOH B 51 351 121 HOH HOH . F 3 HOH B 52 352 123 HOH HOH . F 3 HOH B 53 353 124 HOH HOH . F 3 HOH B 54 354 126 HOH HOH . F 3 HOH B 55 355 127 HOH HOH . F 3 HOH B 56 356 132 HOH HOH . F 3 HOH B 57 357 133 HOH HOH . F 3 HOH B 58 358 134 HOH HOH . F 3 HOH B 59 359 137 HOH HOH . F 3 HOH B 60 360 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KMP . . . D 2 22.241 0.4 -31.129 0.4 36.13 ? C1 KMP 201 B 1 HETATM 2 C C2 KMP . . . D 2 22.841 0.992 -30.05 0.4 36.72 ? C2 KMP 201 B 1 HETATM 3 C C3 KMP . . . D 2 22.366 0.649 -28.811 0.4 35.5 ? C3 KMP 201 B 1 HETATM 4 C C4 KMP . . . D 2 21.338 -0.27 -28.588 0.4 35.6 ? C4 KMP 201 B 1 HETATM 5 C C5 KMP . . . D 2 20.758 -0.856 -29.683 0.4 36.85 ? C5 KMP 201 B 1 HETATM 6 C C6 KMP . . . D 2 21.248 -0.5 -30.931 0.4 36 ? C6 KMP 201 B 1 HETATM 7 C C9 KMP . . . D 2 22.974 1.256 -27.791 0.4 34.63 ? C9 KMP 201 B 1 HETATM 8 C C10 KMP . . . D 2 22.593 0.854 -26.583 0.4 34.49 ? C10 KMP 201 B 1 HETATM 9 C C11 KMP . . . D 2 21.581 -0.021 -26.408 0.4 35.04 ? C11 KMP 201 B 1 HETATM 10 C C14 KMP . . . D 2 21.518 -0.122 -25.062 0.4 33.61 ? C14 KMP 201 B 1 HETATM 11 C C15 KMP . . . D 2 22.061 -1.181 -24.408 0.4 33.73 ? C15 KMP 201 B 1 HETATM 12 C C16 KMP . . . D 2 22.056 -1.157 -23.063 0.4 32.94 ? C16 KMP 201 B 1 HETATM 13 C C17 KMP . . . D 2 21.621 -0.061 -22.407 0.4 31.08 ? C17 KMP 201 B 1 HETATM 14 C C18 KMP . . . D 2 21.172 1.018 -23.07 0.4 32.99 ? C18 KMP 201 B 1 HETATM 15 C C19 KMP . . . D 2 21.142 1.005 -24.407 0.4 33.72 ? C19 KMP 201 B 1 HETATM 16 O O12 KMP . . . D 2 20.88 -0.622 -27.371 0.4 34.96 ? O12 KMP 201 B 1 HETATM 17 O O13 KMP . . . D 2 23.883 2.072 -27.923 0.4 33.94 ? O13 KMP 201 B 1 HETATM 18 O O24 KMP . . . D 2 21.629 -0.036 -21.08 0.4 34.25 ? O24 KMP 201 B 1 HETATM 19 O O27 KMP . . . D 2 23.159 1.412 -25.505 0.4 33.11 ? O27 KMP 201 B 1 HETATM 20 O O29 KMP . . . D 2 20.747 -1.066 -32.015 0.4 40.32 ? O29 KMP 201 B 1 HETATM 21 O O30 KMP . . . D 2 23.856 1.902 -30.212 0.4 33.89 ? O30 KMP 201 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 21 #