data_4DEU # _model_server_result.job_id qBRzp0XA90dgN4aXPYywyw _model_server_result.datetime_utc '2024-11-28 15:15:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4deu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 4DEU # _exptl.entry_id 4DEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NARINGENIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DEU _cell.length_a 43.734 _cell.length_b 85.173 _cell.length_c 65.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.734 85.173 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N # _chem_comp.formula 'C15 H12 O5' _chem_comp.formula_weight 272.253 _chem_comp.id NAR _chem_comp.mon_nstd_flag . _chem_comp.name NARINGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAR doub 227 n y C1 C6 NAR sing 228 n y C1 H11 NAR sing 229 n n C2 C3 NAR sing 230 n y C2 O4 NAR sing 231 n n C3 C4 NAR doub 232 n y C3 H31 NAR sing 233 n n C4 C5 NAR sing 234 n y C4 O5 NAR sing 235 n n C5 C6 NAR doub 236 n y C5 C7 NAR sing 237 n n C6 O1 NAR sing 238 n n C7 C8 NAR sing 239 n n C7 O2 NAR doub 240 n n C8 C9 NAR sing 241 n n C8 H81 NAR sing 242 n n C8 H82 NAR sing 243 n n C9 O1 NAR sing 244 n n C9 C10 NAR sing 245 n n C9 H9 NAR sing 246 n n C10 C11 NAR sing 247 n y C10 C15 NAR doub 248 n y C11 C12 NAR doub 249 n y C11 H111 NAR sing 250 n n C12 C13 NAR sing 251 n y C12 H121 NAR sing 252 n n C13 C14 NAR doub 253 n y C13 O3 NAR sing 254 n n C14 C15 NAR sing 255 n y C14 H141 NAR sing 256 n n C15 H151 NAR sing 257 n n O3 HO3 NAR sing 258 n n O4 H41 NAR sing 259 n n O5 H51 NAR sing 260 n n # _atom_sites.entry_id 4DEU _atom_sites.fract_transf_matrix[1][1] 0.022866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 2762 EDO EDO . D 2 EDO A 1 202 2762 EDO EDO . E 2 EDO A 1 203 2762 EDO EDO . F 2 EDO A 1 204 2762 EDO EDO . G 3 NAR A 1 205 390 NAR NAR . H 2 EDO A 1 206 2762 EDO EDO . I 2 EDO A 1 207 2762 EDO EDO . J 2 EDO A 1 208 2762 EDO EDO . K 2 EDO B 1 201 2762 EDO EDO . L 3 NAR B 1 202 390 NAR NAR . M 4 CA B 1 203 1 CA CA . N 2 EDO B 1 204 2762 EDO EDO . O 2 EDO B 1 205 2762 EDO EDO . P 5 HOH A 1 301 1 HOH HOH . P 5 HOH A 2 302 2 HOH HOH . P 5 HOH A 3 303 4 HOH HOH . P 5 HOH A 4 304 5 HOH HOH . P 5 HOH A 5 305 12 HOH HOH . P 5 HOH A 6 306 14 HOH HOH . P 5 HOH A 7 307 17 HOH HOH . P 5 HOH A 8 308 18 HOH HOH . P 5 HOH A 9 309 21 HOH HOH . P 5 HOH A 10 310 22 HOH HOH . P 5 HOH A 11 311 23 HOH HOH . P 5 HOH A 12 312 25 HOH HOH . P 5 HOH A 13 313 29 HOH HOH . P 5 HOH A 14 314 30 HOH HOH . P 5 HOH A 15 315 31 HOH HOH . P 5 HOH A 16 316 32 HOH HOH . P 5 HOH A 17 317 33 HOH HOH . P 5 HOH A 18 318 35 HOH HOH . P 5 HOH A 19 319 36 HOH HOH . P 5 HOH A 20 320 37 HOH HOH . P 5 HOH A 21 321 40 HOH HOH . P 5 HOH A 22 322 42 HOH HOH . P 5 HOH A 23 323 45 HOH HOH . P 5 HOH A 24 324 46 HOH HOH . P 5 HOH A 25 325 47 HOH HOH . P 5 HOH A 26 326 48 HOH HOH . P 5 HOH A 27 327 49 HOH HOH . P 5 HOH A 28 328 51 HOH HOH . P 5 HOH A 29 329 56 HOH HOH . P 5 HOH A 30 330 57 HOH HOH . P 5 HOH A 31 331 60 HOH HOH . P 5 HOH A 32 332 61 HOH HOH . P 5 HOH A 33 333 64 HOH HOH . P 5 HOH A 34 334 66 HOH HOH . P 5 HOH A 35 335 67 HOH HOH . P 5 HOH A 36 336 68 HOH HOH . P 5 HOH A 37 337 69 HOH HOH . P 5 HOH A 38 338 72 HOH HOH . P 5 HOH A 39 339 73 HOH HOH . P 5 HOH A 40 340 79 HOH HOH . P 5 HOH A 41 341 82 HOH HOH . P 5 HOH A 42 342 83 HOH HOH . P 5 HOH A 43 343 87 HOH HOH . P 5 HOH A 44 344 88 HOH HOH . P 5 HOH A 45 345 89 HOH HOH . P 5 HOH A 46 346 92 HOH HOH . P 5 HOH A 47 347 94 HOH HOH . P 5 HOH A 48 348 97 HOH HOH . P 5 HOH A 49 349 99 HOH HOH . P 5 HOH A 50 350 105 HOH HOH . P 5 HOH A 51 351 110 HOH HOH . P 5 HOH A 52 352 111 HOH HOH . P 5 HOH A 53 353 114 HOH HOH . P 5 HOH A 54 354 115 HOH HOH . P 5 HOH A 55 355 122 HOH HOH . P 5 HOH A 56 356 123 HOH HOH . P 5 HOH A 57 357 126 HOH HOH . P 5 HOH A 58 358 127 HOH HOH . P 5 HOH A 59 359 128 HOH HOH . P 5 HOH A 60 360 129 HOH HOH . P 5 HOH A 61 361 134 HOH HOH . P 5 HOH A 62 362 135 HOH HOH . P 5 HOH A 63 363 137 HOH HOH . P 5 HOH A 64 364 139 HOH HOH . P 5 HOH A 65 365 143 HOH HOH . P 5 HOH A 66 366 145 HOH HOH . P 5 HOH A 67 367 146 HOH HOH . P 5 HOH A 68 368 147 HOH HOH . P 5 HOH A 69 369 150 HOH HOH . P 5 HOH A 70 370 151 HOH HOH . P 5 HOH A 71 371 154 HOH HOH . P 5 HOH A 72 372 155 HOH HOH . P 5 HOH A 73 373 156 HOH HOH . P 5 HOH A 74 374 159 HOH HOH . P 5 HOH A 75 375 160 HOH HOH . P 5 HOH A 76 376 161 HOH HOH . P 5 HOH A 77 377 167 HOH HOH . P 5 HOH A 78 378 182 HOH HOH . P 5 HOH A 79 379 188 HOH HOH . P 5 HOH A 80 380 190 HOH HOH . P 5 HOH A 81 381 191 HOH HOH . P 5 HOH A 82 382 192 HOH HOH . P 5 HOH A 83 383 194 HOH HOH . P 5 HOH A 84 384 195 HOH HOH . P 5 HOH A 85 385 196 HOH HOH . P 5 HOH A 86 386 200 HOH HOH . P 5 HOH A 87 387 205 HOH HOH . P 5 HOH A 88 388 212 HOH HOH . P 5 HOH A 89 389 218 HOH HOH . P 5 HOH A 90 390 219 HOH HOH . P 5 HOH A 91 391 225 HOH HOH . P 5 HOH A 92 392 229 HOH HOH . P 5 HOH A 93 393 233 HOH HOH . P 5 HOH A 94 394 234 HOH HOH . P 5 HOH A 95 395 237 HOH HOH . P 5 HOH A 96 396 238 HOH HOH . P 5 HOH A 97 397 240 HOH HOH . P 5 HOH A 98 398 243 HOH HOH . P 5 HOH A 99 399 244 HOH HOH . P 5 HOH A 100 400 248 HOH HOH . P 5 HOH A 101 401 249 HOH HOH . P 5 HOH A 102 402 251 HOH HOH . P 5 HOH A 103 403 254 HOH HOH . P 5 HOH A 104 404 257 HOH HOH . P 5 HOH A 105 405 261 HOH HOH . P 5 HOH A 106 406 264 HOH HOH . P 5 HOH A 107 407 265 HOH HOH . P 5 HOH A 108 408 267 HOH HOH . P 5 HOH A 109 409 270 HOH HOH . P 5 HOH A 110 410 271 HOH HOH . P 5 HOH A 111 411 275 HOH HOH . Q 5 HOH B 1 301 3 HOH HOH . Q 5 HOH B 2 302 6 HOH HOH . Q 5 HOH B 3 303 7 HOH HOH . Q 5 HOH B 4 304 8 HOH HOH . Q 5 HOH B 5 305 9 HOH HOH . Q 5 HOH B 6 306 10 HOH HOH . Q 5 HOH B 7 307 11 HOH HOH . Q 5 HOH B 8 308 13 HOH HOH . Q 5 HOH B 9 309 15 HOH HOH . Q 5 HOH B 10 310 16 HOH HOH . Q 5 HOH B 11 311 19 HOH HOH . Q 5 HOH B 12 312 20 HOH HOH . Q 5 HOH B 13 313 26 HOH HOH . Q 5 HOH B 14 314 27 HOH HOH . Q 5 HOH B 15 315 28 HOH HOH . Q 5 HOH B 16 316 34 HOH HOH . Q 5 HOH B 17 317 38 HOH HOH . Q 5 HOH B 18 318 39 HOH HOH . Q 5 HOH B 19 319 41 HOH HOH . Q 5 HOH B 20 320 43 HOH HOH . Q 5 HOH B 21 321 44 HOH HOH . Q 5 HOH B 22 322 50 HOH HOH . Q 5 HOH B 23 323 52 HOH HOH . Q 5 HOH B 24 324 53 HOH HOH . Q 5 HOH B 25 325 62 HOH HOH . Q 5 HOH B 26 326 63 HOH HOH . Q 5 HOH B 27 327 65 HOH HOH . Q 5 HOH B 28 328 70 HOH HOH . Q 5 HOH B 29 329 71 HOH HOH . Q 5 HOH B 30 330 74 HOH HOH . Q 5 HOH B 31 331 76 HOH HOH . Q 5 HOH B 32 332 77 HOH HOH . Q 5 HOH B 33 333 80 HOH HOH . Q 5 HOH B 34 334 81 HOH HOH . Q 5 HOH B 35 335 86 HOH HOH . Q 5 HOH B 36 336 93 HOH HOH . Q 5 HOH B 37 337 95 HOH HOH . Q 5 HOH B 38 338 96 HOH HOH . Q 5 HOH B 39 339 98 HOH HOH . Q 5 HOH B 40 340 100 HOH HOH . Q 5 HOH B 41 341 102 HOH HOH . Q 5 HOH B 42 342 103 HOH HOH . Q 5 HOH B 43 343 104 HOH HOH . Q 5 HOH B 44 344 106 HOH HOH . Q 5 HOH B 45 345 107 HOH HOH . Q 5 HOH B 46 346 108 HOH HOH . Q 5 HOH B 47 347 113 HOH HOH . Q 5 HOH B 48 348 116 HOH HOH . Q 5 HOH B 49 349 117 HOH HOH . Q 5 HOH B 50 350 121 HOH HOH . Q 5 HOH B 51 351 125 HOH HOH . Q 5 HOH B 52 352 130 HOH HOH . Q 5 HOH B 53 353 131 HOH HOH . Q 5 HOH B 54 354 133 HOH HOH . Q 5 HOH B 55 355 136 HOH HOH . Q 5 HOH B 56 356 140 HOH HOH . Q 5 HOH B 57 357 141 HOH HOH . Q 5 HOH B 58 358 144 HOH HOH . Q 5 HOH B 59 359 148 HOH HOH . Q 5 HOH B 60 360 149 HOH HOH . Q 5 HOH B 61 361 158 HOH HOH . Q 5 HOH B 62 362 162 HOH HOH . Q 5 HOH B 63 363 163 HOH HOH . Q 5 HOH B 64 364 170 HOH HOH . Q 5 HOH B 65 365 172 HOH HOH . Q 5 HOH B 66 366 176 HOH HOH . Q 5 HOH B 67 367 177 HOH HOH . Q 5 HOH B 68 368 178 HOH HOH . Q 5 HOH B 69 369 179 HOH HOH . Q 5 HOH B 70 370 180 HOH HOH . Q 5 HOH B 71 371 181 HOH HOH . Q 5 HOH B 72 372 183 HOH HOH . Q 5 HOH B 73 373 184 HOH HOH . Q 5 HOH B 74 374 186 HOH HOH . Q 5 HOH B 75 375 187 HOH HOH . Q 5 HOH B 76 376 189 HOH HOH . Q 5 HOH B 77 377 193 HOH HOH . Q 5 HOH B 78 378 202 HOH HOH . Q 5 HOH B 79 379 203 HOH HOH . Q 5 HOH B 80 380 204 HOH HOH . Q 5 HOH B 81 381 207 HOH HOH . Q 5 HOH B 82 382 208 HOH HOH . Q 5 HOH B 83 383 213 HOH HOH . Q 5 HOH B 84 384 214 HOH HOH . Q 5 HOH B 85 385 215 HOH HOH . Q 5 HOH B 86 386 216 HOH HOH . Q 5 HOH B 87 387 224 HOH HOH . Q 5 HOH B 88 388 227 HOH HOH . Q 5 HOH B 89 389 232 HOH HOH . Q 5 HOH B 90 390 235 HOH HOH . Q 5 HOH B 91 391 236 HOH HOH . Q 5 HOH B 92 392 241 HOH HOH . Q 5 HOH B 93 393 246 HOH HOH . Q 5 HOH B 94 394 250 HOH HOH . Q 5 HOH B 95 395 252 HOH HOH . Q 5 HOH B 96 396 255 HOH HOH . Q 5 HOH B 97 397 256 HOH HOH . Q 5 HOH B 98 398 258 HOH HOH . Q 5 HOH B 99 399 260 HOH HOH . Q 5 HOH B 100 400 262 HOH HOH . Q 5 HOH B 101 401 263 HOH HOH . Q 5 HOH B 102 402 266 HOH HOH . Q 5 HOH B 103 403 268 HOH HOH . Q 5 HOH B 104 404 269 HOH HOH . Q 5 HOH B 105 405 272 HOH HOH . Q 5 HOH B 106 406 273 HOH HOH . Q 5 HOH B 107 407 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAR . . . G 3 20.843 41.985 37.605 0.4 29.38 ? C1 NAR 205 A 1 HETATM 2 C C2 NAR . . . G 3 20.942 42.005 36.272 0.4 39.83 ? C2 NAR 205 A 1 HETATM 3 C C3 NAR . . . G 3 21.986 42.628 35.65 0.4 24.4 ? C3 NAR 205 A 1 HETATM 4 C C4 NAR . . . G 3 22.951 43.238 36.408 0.4 39.85 ? C4 NAR 205 A 1 HETATM 5 C C5 NAR . . . G 3 22.885 43.227 37.744 0.4 27.98 ? C5 NAR 205 A 1 HETATM 6 C C6 NAR . . . G 3 21.825 42.593 38.344 0.4 29.83 ? C6 NAR 205 A 1 HETATM 7 C C7 NAR . . . G 3 23.844 43.772 38.606 0.4 32.7 ? C7 NAR 205 A 1 HETATM 8 C C8 NAR . . . G 3 23.788 43.348 40.074 0.4 14.41 ? C8 NAR 205 A 1 HETATM 9 C C9 NAR . . . G 3 22.797 42.141 40.175 0.4 26.5 ? C9 NAR 205 A 1 HETATM 10 O O1 NAR . . . G 3 21.715 42.6 39.661 0.4 23.67 ? O1 NAR 205 A 1 HETATM 11 O O2 NAR . . . G 3 24.788 44.46 38.256 0.4 51.78 ? O2 NAR 205 A 1 HETATM 12 C C10 NAR . . . G 3 22.2 41.68 41.516 0.4 28.16 ? C10 NAR 205 A 1 HETATM 13 C C11 NAR . . . G 3 21.722 42.614 42.356 0.4 30.14 ? C11 NAR 205 A 1 HETATM 14 C C12 NAR . . . G 3 21.16 42.121 43.531 0.4 33.73 ? C12 NAR 205 A 1 HETATM 15 C C13 NAR . . . G 3 21.004 40.772 43.851 0.4 42.71 ? C13 NAR 205 A 1 HETATM 16 C C14 NAR . . . G 3 21.452 39.778 43.022 0.4 43.1 ? C14 NAR 205 A 1 HETATM 17 C C15 NAR . . . G 3 22.031 40.173 41.799 0.4 24.41 ? C15 NAR 205 A 1 HETATM 18 O O3 NAR . . . G 3 20.431 40.482 45.025 0.4 41.41 ? O3 NAR 205 A 1 HETATM 19 O O4 NAR . . . G 3 19.981 41.397 35.576 0.4 51.19 ? O4 NAR 205 A 1 HETATM 20 O O5 NAR . . . G 3 23.976 43.855 35.84 0.4 49.08 ? O5 NAR 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #