data_4DEW # _model_server_result.job_id f-d42Gm2c-tU5srdg7FmJg _model_server_result.datetime_utc '2024-11-15 00:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4DEW # _exptl.entry_id 4DEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DEW _cell.length_a 43.264 _cell.length_b 84.782 _cell.length_c 65.087 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.264 84.782 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id LU2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Luteolin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LU2 doub 175 n y C1 C6 LU2 sing 176 n y C1 H1 LU2 sing 177 n n O1 C2 LU2 sing 178 n n O1 HO1 LU2 sing 179 n n C2 C3 LU2 sing 180 n y C4 O2 LU2 sing 181 n n O2 HO2 LU2 sing 182 n n C3 C4 LU2 doub 183 n y C3 H3 LU2 sing 184 n n C7 O3 LU2 doub 185 n n C5 C4 LU2 sing 186 n y O4 C6 LU2 sing 187 n n O4 C9 LU2 sing 188 n n C6 C5 LU2 doub 189 n y C5 C7 LU2 sing 190 n n C12 O5 LU2 sing 191 n n O5 HO5 LU2 sing 192 n n O6 C13 LU2 sing 193 n n O6 HO6 LU2 sing 194 n n C8 C7 LU2 sing 195 n n C9 C8 LU2 doub 196 n n C8 H8 LU2 sing 197 n n C10 C9 LU2 sing 198 n n C15 C10 LU2 doub 199 n y C10 C11 LU2 sing 200 n y C12 C11 LU2 doub 201 n y C11 H11 LU2 sing 202 n n C13 C12 LU2 sing 203 n y C14 C13 LU2 doub 204 n y C14 C15 LU2 sing 205 n y C14 H14 LU2 sing 206 n n C15 H15 LU2 sing 207 n n # _atom_sites.entry_id 4DEW _atom_sites.fract_transf_matrix[1][1] 0.023114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LU2 A 1 201 1 LU2 LTO . D 2 LU2 B 1 201 1 LU2 LTO . E 3 HOH A 1 301 1 HOH HOH . E 3 HOH A 2 302 2 HOH HOH . E 3 HOH A 3 303 3 HOH HOH . E 3 HOH A 4 304 5 HOH HOH . E 3 HOH A 5 305 6 HOH HOH . E 3 HOH A 6 306 10 HOH HOH . E 3 HOH A 7 307 15 HOH HOH . E 3 HOH A 8 308 16 HOH HOH . E 3 HOH A 9 309 309 HOH HOH . E 3 HOH A 10 310 18 HOH HOH . E 3 HOH A 11 311 19 HOH HOH . E 3 HOH A 12 312 20 HOH HOH . E 3 HOH A 13 313 24 HOH HOH . E 3 HOH A 14 314 25 HOH HOH . E 3 HOH A 15 315 26 HOH HOH . E 3 HOH A 16 316 28 HOH HOH . E 3 HOH A 17 317 30 HOH HOH . E 3 HOH A 18 318 31 HOH HOH . E 3 HOH A 19 319 34 HOH HOH . E 3 HOH A 20 320 36 HOH HOH . E 3 HOH A 21 321 37 HOH HOH . E 3 HOH A 22 322 38 HOH HOH . E 3 HOH A 23 323 40 HOH HOH . E 3 HOH A 24 324 41 HOH HOH . E 3 HOH A 25 325 43 HOH HOH . E 3 HOH A 26 326 44 HOH HOH . E 3 HOH A 27 327 46 HOH HOH . E 3 HOH A 28 328 48 HOH HOH . E 3 HOH A 29 329 50 HOH HOH . E 3 HOH A 30 330 52 HOH HOH . E 3 HOH A 31 331 53 HOH HOH . E 3 HOH A 32 332 54 HOH HOH . E 3 HOH A 33 333 55 HOH HOH . E 3 HOH A 34 334 58 HOH HOH . E 3 HOH A 35 335 60 HOH HOH . E 3 HOH A 36 336 64 HOH HOH . E 3 HOH A 37 337 65 HOH HOH . E 3 HOH A 38 338 70 HOH HOH . E 3 HOH A 39 339 71 HOH HOH . E 3 HOH A 40 340 73 HOH HOH . E 3 HOH A 41 341 75 HOH HOH . E 3 HOH A 42 342 78 HOH HOH . E 3 HOH A 43 343 79 HOH HOH . E 3 HOH A 44 344 81 HOH HOH . E 3 HOH A 45 345 82 HOH HOH . E 3 HOH A 46 346 83 HOH HOH . E 3 HOH A 47 347 84 HOH HOH . E 3 HOH A 48 348 85 HOH HOH . E 3 HOH A 49 349 88 HOH HOH . E 3 HOH A 50 350 91 HOH HOH . E 3 HOH A 51 351 102 HOH HOH . E 3 HOH A 52 352 104 HOH HOH . E 3 HOH A 53 353 107 HOH HOH . E 3 HOH A 54 354 108 HOH HOH . E 3 HOH A 55 355 109 HOH HOH . E 3 HOH A 56 356 110 HOH HOH . E 3 HOH A 57 357 113 HOH HOH . E 3 HOH A 58 358 114 HOH HOH . E 3 HOH A 59 359 115 HOH HOH . E 3 HOH A 60 360 121 HOH HOH . E 3 HOH A 61 361 122 HOH HOH . E 3 HOH A 62 362 123 HOH HOH . E 3 HOH A 63 363 124 HOH HOH . E 3 HOH A 64 364 125 HOH HOH . E 3 HOH A 65 365 126 HOH HOH . E 3 HOH A 66 366 130 HOH HOH . E 3 HOH A 67 367 131 HOH HOH . E 3 HOH A 68 368 132 HOH HOH . F 3 HOH B 1 301 4 HOH HOH . F 3 HOH B 2 302 7 HOH HOH . F 3 HOH B 3 303 8 HOH HOH . F 3 HOH B 4 304 9 HOH HOH . F 3 HOH B 5 305 11 HOH HOH . F 3 HOH B 6 306 12 HOH HOH . F 3 HOH B 7 307 13 HOH HOH . F 3 HOH B 8 308 14 HOH HOH . F 3 HOH B 9 309 21 HOH HOH . F 3 HOH B 10 310 22 HOH HOH . F 3 HOH B 11 311 23 HOH HOH . F 3 HOH B 12 312 27 HOH HOH . F 3 HOH B 13 313 29 HOH HOH . F 3 HOH B 14 314 32 HOH HOH . F 3 HOH B 15 315 33 HOH HOH . F 3 HOH B 16 316 35 HOH HOH . F 3 HOH B 17 317 39 HOH HOH . F 3 HOH B 18 318 45 HOH HOH . F 3 HOH B 19 319 47 HOH HOH . F 3 HOH B 20 320 49 HOH HOH . F 3 HOH B 21 321 51 HOH HOH . F 3 HOH B 22 322 56 HOH HOH . F 3 HOH B 23 323 57 HOH HOH . F 3 HOH B 24 324 59 HOH HOH . F 3 HOH B 25 325 61 HOH HOH . F 3 HOH B 26 326 62 HOH HOH . F 3 HOH B 27 327 63 HOH HOH . F 3 HOH B 28 328 67 HOH HOH . F 3 HOH B 29 329 68 HOH HOH . F 3 HOH B 30 330 69 HOH HOH . F 3 HOH B 31 331 72 HOH HOH . F 3 HOH B 32 332 74 HOH HOH . F 3 HOH B 33 333 76 HOH HOH . F 3 HOH B 34 334 77 HOH HOH . F 3 HOH B 35 335 80 HOH HOH . F 3 HOH B 36 336 86 HOH HOH . F 3 HOH B 37 337 89 HOH HOH . F 3 HOH B 38 338 90 HOH HOH . F 3 HOH B 39 339 92 HOH HOH . F 3 HOH B 40 340 93 HOH HOH . F 3 HOH B 41 341 94 HOH HOH . F 3 HOH B 42 342 342 HOH HOH . F 3 HOH B 43 343 97 HOH HOH . F 3 HOH B 44 344 98 HOH HOH . F 3 HOH B 45 345 99 HOH HOH . F 3 HOH B 46 346 101 HOH HOH . F 3 HOH B 47 347 106 HOH HOH . F 3 HOH B 48 348 111 HOH HOH . F 3 HOH B 49 349 116 HOH HOH . F 3 HOH B 50 350 117 HOH HOH . F 3 HOH B 51 351 118 HOH HOH . F 3 HOH B 52 352 119 HOH HOH . F 3 HOH B 53 353 120 HOH HOH . F 3 HOH B 54 354 127 HOH HOH . F 3 HOH B 55 355 128 HOH HOH . F 3 HOH B 56 356 129 HOH HOH . F 3 HOH B 57 357 133 HOH HOH . F 3 HOH B 58 358 134 HOH HOH . F 3 HOH B 59 359 135 HOH HOH . F 3 HOH B 60 360 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LU2 . . . C 2 19.468 41.143 36.104 0.4 44.61 ? C1 LU2 201 A 1 HETATM 2 O O1 LU2 . . . C 2 18.264 40.647 34.18 0.4 41.25 ? O1 LU2 201 A 1 HETATM 3 C C2 LU2 . . . C 2 19.342 41.179 34.737 0.4 41.4 ? C2 LU2 201 A 1 HETATM 4 O O2 LU2 . . . C 2 22.341 42.958 33.782 0.4 52.98 ? O2 LU2 201 A 1 HETATM 5 C C3 LU2 . . . C 2 20.317 41.801 33.952 0.4 51.37 ? C3 LU2 201 A 1 HETATM 6 O O3 LU2 . . . C 2 23.484 43.564 35.995 0.4 46.3 ? O3 LU2 201 A 1 HETATM 7 C C4 LU2 . . . C 2 21.419 42.377 34.557 0.4 46.87 ? C4 LU2 201 A 1 HETATM 8 O O4 LU2 . . . C 2 20.627 41.662 38.021 0.4 50.55 ? O4 LU2 201 A 1 HETATM 9 C C5 LU2 . . . C 2 21.551 42.345 35.948 0.4 44.26 ? C5 LU2 201 A 1 HETATM 10 O O5 LU2 . . . C 2 21.315 39.778 42.94 0.4 38.1 ? O5 LU2 201 A 1 HETATM 11 C C6 LU2 . . . C 2 20.57 41.738 36.691 0.4 40.43 ? C6 LU2 201 A 1 HETATM 12 O O6 LU2 . . . C 2 21.516 42.299 43.981 0.4 48.42 ? O6 LU2 201 A 1 HETATM 13 C C7 LU2 . . . C 2 22.617 42.927 36.593 0.4 40.28 ? C7 LU2 201 A 1 HETATM 14 C C8 LU2 . . . C 2 22.626 42.924 37.967 0.4 50.12 ? C8 LU2 201 A 1 HETATM 15 C C9 LU2 . . . C 2 21.646 42.244 38.652 0.4 45.4 ? C9 LU2 201 A 1 HETATM 16 C C10 LU2 . . . C 2 21.622 42.192 40.007 0.4 45.2 ? C10 LU2 201 A 1 HETATM 17 C C11 LU2 . . . C 2 21.507 40.971 40.721 0.4 44.36 ? C11 LU2 201 A 1 HETATM 18 C C12 LU2 . . . C 2 21.46 40.943 42.106 0.4 36.13 ? C12 LU2 201 A 1 HETATM 19 C C13 LU2 . . . C 2 21.546 42.213 42.666 0.4 36.99 ? C13 LU2 201 A 1 HETATM 20 C C14 LU2 . . . C 2 21.658 43.416 41.989 0.4 35.99 ? C14 LU2 201 A 1 HETATM 21 C C15 LU2 . . . C 2 21.694 43.417 40.637 0.4 46.29 ? C15 LU2 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #