data_4DFL # _model_server_result.job_id jmhHWvbkgE9KzNoAQYhpvg _model_server_result.datetime_utc '2024-11-05 12:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dfl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4DFL # _exptl.entry_id 4DFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-amino-6-{3-[(methylsulfonyl)amino]phenyl}-N-(piperidin-4-ylmethyl)pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DFL _cell.length_a 40.028 _cell.length_b 85.004 _cell.length_c 90.748 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H24 N6 O3 S' _chem_comp.formula_weight 404.487 _chem_comp.id 0K0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-amino-6-{3-[(methylsulfonyl)amino]phenyl}-N-(piperidin-4-ylmethyl)pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 S25 0K0 doub 1 n n C21 C19 0K0 sing 2 n n C21 N22 0K0 sing 3 n n C19 C17 0K0 sing 4 n n O26 S25 0K0 doub 5 n n S25 N24 0K0 sing 6 n n S25 C27 0K0 sing 7 n n C16 C17 0K0 sing 8 n n C16 N15 0K0 sing 9 n n C17 C18 0K0 sing 10 n n N24 C4 0K0 sing 11 n n N22 C20 0K0 sing 12 n n N15 C13 0K0 sing 13 n n C4 C2 0K0 doub 14 n y C4 C6 0K0 sing 15 n y C18 C20 0K0 sing 16 n n C2 C1 0K0 sing 17 n y C13 O14 0K0 doub 18 n n C13 C11 0K0 sing 19 n n C6 C5 0K0 doub 20 n y N9 C11 0K0 doub 21 n y N9 C7 0K0 sing 22 n y C11 C12 0K0 sing 23 n y C1 C7 0K0 sing 24 n n C1 C3 0K0 doub 25 n y C5 C3 0K0 sing 26 n y C7 C8 0K0 doub 27 n y C12 N23 0K0 sing 28 n n C12 N10 0K0 doub 29 n y C8 N10 0K0 sing 30 n y C2 H1 0K0 sing 31 n n C3 H2 0K0 sing 32 n n C5 H3 0K0 sing 33 n n C6 H4 0K0 sing 34 n n C8 H5 0K0 sing 35 n n C16 H6 0K0 sing 36 n n C16 H7 0K0 sing 37 n n C17 H8 0K0 sing 38 n n C18 H9 0K0 sing 39 n n C18 H10 0K0 sing 40 n n C19 H11 0K0 sing 41 n n C19 H12 0K0 sing 42 n n C21 H13 0K0 sing 43 n n C21 H14 0K0 sing 44 n n N22 H15 0K0 sing 45 n n C27 H17 0K0 sing 46 n n C27 H18 0K0 sing 47 n n C27 H19 0K0 sing 48 n n N24 H20 0K0 sing 49 n n N23 H21 0K0 sing 50 n n N23 H22 0K0 sing 51 n n N15 H23 0K0 sing 52 n n C20 H24 0K0 sing 53 n n C20 H25 0K0 sing 54 n n # _atom_sites.entry_id 4DFL _atom_sites.fract_transf_matrix[1][1] 0.024983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0K0 A 1 701 1 0K0 INX . C 3 EDO A 1 702 1 EDO EDO . D 4 SO4 A 1 703 2 SO4 SO4 . E 5 HOH A 1 801 1 HOH HOH . E 5 HOH A 2 802 2 HOH HOH . E 5 HOH A 3 803 3 HOH HOH . E 5 HOH A 4 804 4 HOH HOH . E 5 HOH A 5 805 5 HOH HOH . E 5 HOH A 6 806 6 HOH HOH . E 5 HOH A 7 807 7 HOH HOH . E 5 HOH A 8 808 8 HOH HOH . E 5 HOH A 9 809 9 HOH HOH . E 5 HOH A 10 810 10 HOH HOH . E 5 HOH A 11 811 11 HOH HOH . E 5 HOH A 12 812 12 HOH HOH . E 5 HOH A 13 813 13 HOH HOH . E 5 HOH A 14 814 14 HOH HOH . E 5 HOH A 15 815 15 HOH HOH . E 5 HOH A 16 816 16 HOH HOH . E 5 HOH A 17 817 17 HOH HOH . E 5 HOH A 18 818 18 HOH HOH . E 5 HOH A 19 819 19 HOH HOH . E 5 HOH A 20 820 20 HOH HOH . E 5 HOH A 21 821 21 HOH HOH . E 5 HOH A 22 822 22 HOH HOH . E 5 HOH A 23 823 23 HOH HOH . E 5 HOH A 24 824 24 HOH HOH . E 5 HOH A 25 825 25 HOH HOH . E 5 HOH A 26 826 26 HOH HOH . E 5 HOH A 27 827 27 HOH HOH . E 5 HOH A 28 828 28 HOH HOH . E 5 HOH A 29 829 29 HOH HOH . E 5 HOH A 30 830 30 HOH HOH . E 5 HOH A 31 831 31 HOH HOH . E 5 HOH A 32 832 32 HOH HOH . E 5 HOH A 33 833 33 HOH HOH . E 5 HOH A 34 834 34 HOH HOH . E 5 HOH A 35 835 35 HOH HOH . E 5 HOH A 36 836 36 HOH HOH . E 5 HOH A 37 837 37 HOH HOH . E 5 HOH A 38 838 38 HOH HOH . E 5 HOH A 39 839 39 HOH HOH . E 5 HOH A 40 840 40 HOH HOH . E 5 HOH A 41 841 41 HOH HOH . E 5 HOH A 42 842 42 HOH HOH . E 5 HOH A 43 843 43 HOH HOH . E 5 HOH A 44 844 44 HOH HOH . E 5 HOH A 45 845 45 HOH HOH . E 5 HOH A 46 846 46 HOH HOH . E 5 HOH A 47 847 47 HOH HOH . E 5 HOH A 48 848 48 HOH HOH . E 5 HOH A 49 849 49 HOH HOH . E 5 HOH A 50 850 50 HOH HOH . E 5 HOH A 51 851 51 HOH HOH . E 5 HOH A 52 852 52 HOH HOH . E 5 HOH A 53 853 53 HOH HOH . E 5 HOH A 54 854 54 HOH HOH . E 5 HOH A 55 855 55 HOH HOH . E 5 HOH A 56 856 56 HOH HOH . E 5 HOH A 57 857 57 HOH HOH . E 5 HOH A 58 858 58 HOH HOH . E 5 HOH A 59 859 59 HOH HOH . E 5 HOH A 60 860 60 HOH HOH . E 5 HOH A 61 861 61 HOH HOH . E 5 HOH A 62 862 62 HOH HOH . E 5 HOH A 63 863 63 HOH HOH . E 5 HOH A 64 864 64 HOH HOH . E 5 HOH A 65 865 65 HOH HOH . E 5 HOH A 66 866 66 HOH HOH . E 5 HOH A 67 867 67 HOH HOH . E 5 HOH A 68 868 68 HOH HOH . E 5 HOH A 69 869 69 HOH HOH . E 5 HOH A 70 870 70 HOH HOH . E 5 HOH A 71 871 71 HOH HOH . E 5 HOH A 72 872 72 HOH HOH . E 5 HOH A 73 873 73 HOH HOH . E 5 HOH A 74 874 74 HOH HOH . E 5 HOH A 75 875 75 HOH HOH . E 5 HOH A 76 876 76 HOH HOH . E 5 HOH A 77 877 77 HOH HOH . E 5 HOH A 78 878 78 HOH HOH . E 5 HOH A 79 879 79 HOH HOH . E 5 HOH A 80 880 80 HOH HOH . E 5 HOH A 81 881 81 HOH HOH . E 5 HOH A 82 882 82 HOH HOH . E 5 HOH A 83 883 83 HOH HOH . E 5 HOH A 84 884 84 HOH HOH . E 5 HOH A 85 885 85 HOH HOH . E 5 HOH A 86 886 86 HOH HOH . E 5 HOH A 87 887 87 HOH HOH . E 5 HOH A 88 888 88 HOH HOH . E 5 HOH A 89 889 89 HOH HOH . E 5 HOH A 90 890 90 HOH HOH . E 5 HOH A 91 891 91 HOH HOH . E 5 HOH A 92 892 92 HOH HOH . E 5 HOH A 93 893 93 HOH HOH . E 5 HOH A 94 894 94 HOH HOH . E 5 HOH A 95 895 95 HOH HOH . E 5 HOH A 96 896 96 HOH HOH . E 5 HOH A 97 897 97 HOH HOH . E 5 HOH A 98 898 98 HOH HOH . E 5 HOH A 99 899 99 HOH HOH . E 5 HOH A 100 900 100 HOH HOH . E 5 HOH A 101 901 101 HOH HOH . E 5 HOH A 102 902 102 HOH HOH . E 5 HOH A 103 903 103 HOH HOH . E 5 HOH A 104 904 104 HOH HOH . E 5 HOH A 105 905 105 HOH HOH . E 5 HOH A 106 906 106 HOH HOH . E 5 HOH A 107 907 107 HOH HOH . E 5 HOH A 108 908 108 HOH HOH . E 5 HOH A 109 909 109 HOH HOH . E 5 HOH A 110 910 110 HOH HOH . E 5 HOH A 111 911 111 HOH HOH . E 5 HOH A 112 912 112 HOH HOH . E 5 HOH A 113 913 113 HOH HOH . E 5 HOH A 114 914 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0K0 . . . B 2 0.68 -1.019 14.519 1 42.81 ? C1 0K0 701 A 1 HETATM 2 C C2 0K0 . . . B 2 0.178 -0.204 13.515 1 45.78 ? C2 0K0 701 A 1 HETATM 3 C C3 0K0 . . . B 2 -0.141 -1.936 15.164 1 44.44 ? C3 0K0 701 A 1 HETATM 4 C C4 0K0 . . . B 2 -1.15 -0.316 13.128 1 49.5 ? C4 0K0 701 A 1 HETATM 5 C C5 0K0 . . . B 2 -1.463 -2.035 14.788 1 45.82 ? C5 0K0 701 A 1 HETATM 6 C C6 0K0 . . . B 2 -1.967 -1.229 13.786 1 46.05 ? C6 0K0 701 A 1 HETATM 7 C C7 0K0 . . . B 2 2.08 -0.849 14.863 1 43.52 ? C7 0K0 701 A 1 HETATM 8 C C8 0K0 . . . B 2 2.755 -1.636 15.781 1 40.07 ? C8 0K0 701 A 1 HETATM 9 N N10 0K0 . . . B 2 4.077 -1.383 16.035 1 40.39 ? N10 0K0 701 A 1 HETATM 10 C C11 0K0 . . . B 2 4.073 0.412 14.436 1 45.3 ? C11 0K0 701 A 1 HETATM 11 C C12 0K0 . . . B 2 4.741 -0.355 15.371 1 41.59 ? C12 0K0 701 A 1 HETATM 12 O O14 0K0 . . . B 2 5.762 1.96 13.934 1 45.69 ? O14 0K0 701 A 1 HETATM 13 C C16 0K0 . . . B 2 4.195 3.313 11.97 1 52.65 ? C16 0K0 701 A 1 HETATM 14 C C17 0K0 . . . B 2 2.989 4.253 12.031 1 54.8 ? C17 0K0 701 A 1 HETATM 15 C C18 0K0 . . . B 2 2.827 4.846 13.445 1 54.76 ? C18 0K0 701 A 1 HETATM 16 C C19 0K0 . . . B 2 3.133 5.405 11.029 1 54.48 ? C19 0K0 701 A 1 HETATM 17 C C21 0K0 . . . B 2 1.8 6.163 11.019 1 55.4 ? C21 0K0 701 A 1 HETATM 18 N N22 0K0 . . . B 2 1.466 6.654 12.371 1 54.44 ? N22 0K0 701 A 1 HETATM 19 O O26 0K0 . . . B 2 0.413 1.6 11.263 1 61.57 ? O26 0K0 701 A 1 HETATM 20 C C27 0K0 . . . B 2 -1.329 3.187 12.551 1 60.71 ? C27 0K0 701 A 1 HETATM 21 O O28 0K0 . . . B 2 -1.607 2.094 10.151 1 60.65 ? O28 0K0 701 A 1 HETATM 22 S S25 0K0 . . . B 2 -1.003 1.81 11.437 1 62.57 ? S25 0K0 701 A 1 HETATM 23 N N24 0K0 . . . B 2 -1.725 0.508 12.127 1 52.69 ? N24 0K0 701 A 1 HETATM 24 N N9 0K0 . . . B 2 2.742 0.153 14.204 1 43.8 ? N9 0K0 701 A 1 HETATM 25 N N23 0K0 . . . B 2 6.084 -0.151 15.683 1 38.72 ? N23 0K0 701 A 1 HETATM 26 C C13 0K0 . . . B 2 4.645 1.549 13.692 1 42.31 ? C13 0K0 701 A 1 HETATM 27 N N15 0K0 . . . B 2 3.822 2.136 12.766 1 49.56 ? N15 0K0 701 A 1 HETATM 28 C C20 0K0 . . . B 2 1.545 5.693 13.498 1 55.25 ? C20 0K0 701 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #