data_4DFN # _model_server_result.job_id U78y9IPZ3TjjYhK0voBpSg _model_server_result.datetime_utc '2024-10-12 15:29:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4DFN # _exptl.entry_id 4DFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.529 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-amino-6-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]-N-[(1R,2r,3S,5s,7s)-5-hydroxyadamantan-2-yl]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DFN _cell.length_a 40.295 _cell.length_b 84.848 _cell.length_c 90.996 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H28 N6 O2' _chem_comp.formula_weight 444.529 _chem_comp.id 0K1 _chem_comp.mon_nstd_flag . _chem_comp.name 3-amino-6-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]-N-[(1R,2r,3S,5s,7s)-5-hydroxyadamantan-2-yl]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C27 0K1 sing 1 n n C29 C31 0K1 sing 2 n n C22 N20 0K1 sing 3 n n C27 C28 0K1 sing 4 n n C27 C23 0K1 sing 5 n n C31 C32 0K1 sing 6 n n C31 C26 0K1 sing 7 n n C28 C30 0K1 sing 8 n n C32 C30 0K1 sing 9 n n N20 N21 0K1 sing 10 n y N20 C18 0K1 sing 11 n y N21 C19 0K1 doub 12 n y C18 C17 0K1 doub 13 n y C30 O33 0K1 sing 14 n n C30 C25 0K1 sing 15 n n C23 N16 0K1 sing 16 n n C23 C24 0K1 sing 17 n n C26 C24 0K1 sing 18 n n C19 C17 0K1 sing 19 n y C17 C4 0K1 sing 20 n n N16 C14 0K1 sing 21 n n C24 C25 0K1 sing 22 n n C4 C2 0K1 doub 23 n y C4 C6 0K1 sing 24 n y C2 C1 0K1 sing 25 n y C14 O15 0K1 doub 26 n n C14 C8 0K1 sing 27 n n C6 C5 0K1 doub 28 n y N10 C8 0K1 doub 29 n y N10 C12 0K1 sing 30 n y C1 C12 0K1 sing 31 n n C1 C3 0K1 doub 32 n y C8 C7 0K1 sing 33 n y C5 C3 0K1 sing 34 n y C12 C11 0K1 doub 35 n y C7 N13 0K1 sing 36 n n C7 N9 0K1 doub 37 n y C11 N9 0K1 sing 38 n y C2 H1 0K1 sing 39 n n C3 H2 0K1 sing 40 n n C5 H3 0K1 sing 41 n n C6 H4 0K1 sing 42 n n C11 H5 0K1 sing 43 n n N13 H6 0K1 sing 44 n n N13 H7 0K1 sing 45 n n C18 H8 0K1 sing 46 n n C19 H9 0K1 sing 47 n n C23 H10 0K1 sing 48 n n C24 H11 0K1 sing 49 n n C27 H12 0K1 sing 50 n n C31 H13 0K1 sing 51 n n C32 H14 0K1 sing 52 n n C32 H15 0K1 sing 53 n n N16 H16 0K1 sing 54 n n C29 H17 0K1 sing 55 n n C29 H18 0K1 sing 56 n n O33 H19 0K1 sing 57 n n C28 H20 0K1 sing 58 n n C28 H21 0K1 sing 59 n n C25 H22 0K1 sing 60 n n C25 H23 0K1 sing 61 n n C26 H24 0K1 sing 62 n n C26 H25 0K1 sing 63 n n C22 H26 0K1 sing 64 n n C22 H27 0K1 sing 65 n n C22 H28 0K1 sing 66 n n # _atom_sites.entry_id 4DFN _atom_sites.fract_transf_matrix[1][1] 0.024817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0K1 A 1 701 1 0K1 INX . C 3 HOH A 1 801 1 HOH HOH . C 3 HOH A 2 802 2 HOH HOH . C 3 HOH A 3 803 3 HOH HOH . C 3 HOH A 4 804 4 HOH HOH . C 3 HOH A 5 805 5 HOH HOH . C 3 HOH A 6 806 6 HOH HOH . C 3 HOH A 7 807 7 HOH HOH . C 3 HOH A 8 808 8 HOH HOH . C 3 HOH A 9 809 9 HOH HOH . C 3 HOH A 10 810 10 HOH HOH . C 3 HOH A 11 811 11 HOH HOH . C 3 HOH A 12 812 12 HOH HOH . C 3 HOH A 13 813 13 HOH HOH . C 3 HOH A 14 814 14 HOH HOH . C 3 HOH A 15 815 15 HOH HOH . C 3 HOH A 16 816 16 HOH HOH . C 3 HOH A 17 817 17 HOH HOH . C 3 HOH A 18 818 18 HOH HOH . C 3 HOH A 19 819 19 HOH HOH . C 3 HOH A 20 820 20 HOH HOH . C 3 HOH A 21 821 21 HOH HOH . C 3 HOH A 22 822 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0K1 . . . B 2 0.711 -1.171 14.468 1 53.66 ? C1 0K1 701 A 1 HETATM 2 C C2 0K1 . . . B 2 -0.017 -0.223 13.753 1 59.77 ? C2 0K1 701 A 1 HETATM 3 C C3 0K1 . . . B 2 0.05 -2.328 14.885 1 55.87 ? C3 0K1 701 A 1 HETATM 4 C C4 0K1 . . . B 2 -1.363 -0.429 13.437 1 64.93 ? C4 0K1 701 A 1 HETATM 5 C C5 0K1 . . . B 2 -1.285 -2.536 14.578 1 56.32 ? C5 0K1 701 A 1 HETATM 6 C C6 0K1 . . . B 2 -1.996 -1.591 13.859 1 59.81 ? C6 0K1 701 A 1 HETATM 7 C C7 0K1 . . . B 2 4.831 -0.272 15.38 1 53.89 ? C7 0K1 701 A 1 HETATM 8 C C8 0K1 . . . B 2 4.12 0.507 14.482 1 56.44 ? C8 0K1 701 A 1 HETATM 9 N N10 0K1 . . . B 2 2.794 0.192 14.217 1 52.2 ? N10 0K1 701 A 1 HETATM 10 C C11 0K1 . . . B 2 2.895 -1.672 15.689 1 52.41 ? C11 0K1 701 A 1 HETATM 11 C C12 0K1 . . . B 2 2.156 -0.899 14.796 1 52.47 ? C12 0K1 701 A 1 HETATM 12 N N13 0K1 . . . B 2 6.169 0.02 15.684 1 59.15 ? N13 0K1 701 A 1 HETATM 13 C C17 0K1 . . . B 2 -2.122 0.595 12.683 1 66.41 ? C17 0K1 701 A 1 HETATM 14 C C18 0K1 . . . B 2 -1.626 1.66 11.979 1 71.6 ? C18 0K1 701 A 1 HETATM 15 C C19 0K1 . . . B 2 -3.486 0.713 12.56 1 70.72 ? C19 0K1 701 A 1 HETATM 16 C C23 0K1 . . . B 2 4.135 3.659 12.181 1 73.7 ? C23 0K1 701 A 1 HETATM 17 C C24 0K1 . . . B 2 3.687 4.871 13.02 1 75.97 ? C24 0K1 701 A 1 HETATM 18 C C27 0K1 . . . B 2 3.329 3.656 10.848 1 76.76 ? C27 0K1 701 A 1 HETATM 19 C C30 0K1 . . . B 2 1.377 4.741 12.027 1 79.51 ? C30 0K1 701 A 1 HETATM 20 C C31 0K1 . . . B 2 3.142 6.169 10.929 1 79.38 ? C31 0K1 701 A 1 HETATM 21 C C32 0K1 . . . B 2 1.636 6.057 11.263 1 79.32 ? C32 0K1 701 A 1 HETATM 22 O O15 0K1 . . . B 2 5.846 2.055 14.055 1 60.07 ? O15 0K1 701 A 1 HETATM 23 C C14 0K1 . . . B 2 4.717 1.703 13.83 1 60.69 ? C14 0K1 701 A 1 HETATM 24 N N16 0K1 . . . B 2 3.908 2.427 12.979 1 67.77 ? N16 0K1 701 A 1 HETATM 25 C C29 0K1 . . . B 2 3.613 4.969 10.087 1 80.01 ? C29 0K1 701 A 1 HETATM 26 O O33 0K1 . . . B 2 -0.001 4.596 12.352 1 83.81 ? O33 0K1 701 A 1 HETATM 27 C C28 0K1 . . . B 2 1.817 3.583 11.106 1 77.29 ? C28 0K1 701 A 1 HETATM 28 C C25 0K1 . . . B 2 2.186 4.765 13.335 1 77.91 ? C25 0K1 701 A 1 HETATM 29 C C26 0K1 . . . B 2 3.923 6.178 12.242 1 79 ? C26 0K1 701 A 1 HETATM 30 N N9 0K1 . . . B 2 4.215 -1.356 15.979 1 56.15 ? N9 0K1 701 A 1 HETATM 31 N N21 0K1 . . . B 2 -3.758 1.791 11.799 1 72.85 ? N21 0K1 701 A 1 HETATM 32 N N20 0K1 . . . B 2 -2.672 2.335 11.475 1 71.81 ? N20 0K1 701 A 1 HETATM 33 C C22 0K1 . . . B 2 -2.561 3.542 10.651 1 71.83 ? C22 0K1 701 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #