data_4DG3 # _model_server_result.job_id mYQ_Pqg5Uu2vmR4r6T8Wcg _model_server_result.datetime_utc '2024-10-13 16:28:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 4DG3 # _exptl.entry_id 4DG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DG3 _cell.length_a 72.29 _cell.length_b 76.69 _cell.length_c 80.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 159 E PHE 138 1_555 A N SEP 160 E SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C SEP 160 E SEP 139 1_555 A N GLU 161 E GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C TRP 217 E TRP 196 1_555 A N TPO 218 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C TPO 218 E TPO 197 1_555 A N LEU 219 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 C O3G ANP . E ANP 401 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 C O2A ANP . E ANP 401 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 A OD1 ASN 192 E ASN 171 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 C O1B ANP . E ANP 401 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc5 C O2G ANP . E ANP 401 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 A OD2 ASP 205 E ASP 184 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc7 A OD2 ASP 205 E ASP 184 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc8 A OD1 ASP 205 E ASP 184 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc9 E MG MG . E MG 403 1_555 F O HOH . E HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc10 D MG MG . E MG 402 1_555 F O HOH . E HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc11 E MG MG . E MG 403 1_555 F O HOH . E HOH 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DG3 _atom_sites.fract_transf_matrix[1][1] 0.013833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP E 1 401 355 ANP ANP . D 4 MG E 1 402 1 MG MG . E 4 MG E 1 403 1 MG MG . F 5 HOH E 1 501 1 HOH HOH . F 5 HOH E 2 502 2 HOH HOH . F 5 HOH E 3 503 3 HOH HOH . F 5 HOH E 4 504 4 HOH HOH . F 5 HOH E 5 505 5 HOH HOH . F 5 HOH E 6 506 6 HOH HOH . F 5 HOH E 7 507 7 HOH HOH . F 5 HOH E 8 508 12 HOH HOH . F 5 HOH E 9 509 13 HOH HOH . F 5 HOH E 10 510 14 HOH HOH . F 5 HOH E 11 511 15 HOH HOH . F 5 HOH E 12 512 16 HOH HOH . F 5 HOH E 13 513 17 HOH HOH . F 5 HOH E 14 514 18 HOH HOH . F 5 HOH E 15 515 19 HOH HOH . F 5 HOH E 16 516 20 HOH HOH . F 5 HOH E 17 517 21 HOH HOH . F 5 HOH E 18 518 22 HOH HOH . F 5 HOH E 19 519 23 HOH HOH . F 5 HOH E 20 520 24 HOH HOH . F 5 HOH E 21 521 25 HOH HOH . F 5 HOH E 22 522 26 HOH HOH . F 5 HOH E 23 523 27 HOH HOH . F 5 HOH E 24 524 28 HOH HOH . F 5 HOH E 25 525 29 HOH HOH . F 5 HOH E 26 526 30 HOH HOH . F 5 HOH E 27 527 31 HOH HOH . F 5 HOH E 28 528 33 HOH HOH . F 5 HOH E 29 529 37 HOH HOH . F 5 HOH E 30 530 38 HOH HOH . F 5 HOH E 31 531 39 HOH HOH . F 5 HOH E 32 532 40 HOH HOH . F 5 HOH E 33 533 41 HOH HOH . F 5 HOH E 34 534 42 HOH HOH . F 5 HOH E 35 535 43 HOH HOH . F 5 HOH E 36 536 44 HOH HOH . F 5 HOH E 37 537 45 HOH HOH . F 5 HOH E 38 538 46 HOH HOH . F 5 HOH E 39 539 47 HOH HOH . F 5 HOH E 40 540 48 HOH HOH . F 5 HOH E 41 541 49 HOH HOH . F 5 HOH E 42 542 50 HOH HOH . F 5 HOH E 43 543 51 HOH HOH . F 5 HOH E 44 544 52 HOH HOH . F 5 HOH E 45 545 53 HOH HOH . F 5 HOH E 46 546 54 HOH HOH . F 5 HOH E 47 547 55 HOH HOH . F 5 HOH E 48 548 56 HOH HOH . F 5 HOH E 49 549 57 HOH HOH . F 5 HOH E 50 550 58 HOH HOH . F 5 HOH E 51 551 59 HOH HOH . F 5 HOH E 52 552 60 HOH HOH . F 5 HOH E 53 553 61 HOH HOH . F 5 HOH E 54 554 62 HOH HOH . F 5 HOH E 55 555 63 HOH HOH . F 5 HOH E 56 556 64 HOH HOH . F 5 HOH E 57 557 65 HOH HOH . F 5 HOH E 58 558 71 HOH HOH . F 5 HOH E 59 559 72 HOH HOH . F 5 HOH E 60 560 73 HOH HOH . F 5 HOH E 61 561 74 HOH HOH . F 5 HOH E 62 562 75 HOH HOH . F 5 HOH E 63 563 76 HOH HOH . F 5 HOH E 64 564 77 HOH HOH . F 5 HOH E 65 565 80 HOH HOH . F 5 HOH E 66 566 81 HOH HOH . F 5 HOH E 67 567 82 HOH HOH . F 5 HOH E 68 568 83 HOH HOH . F 5 HOH E 69 569 84 HOH HOH . F 5 HOH E 70 570 85 HOH HOH . F 5 HOH E 71 571 86 HOH HOH . F 5 HOH E 72 572 87 HOH HOH . F 5 HOH E 73 573 88 HOH HOH . F 5 HOH E 74 574 89 HOH HOH . F 5 HOH E 75 575 90 HOH HOH . F 5 HOH E 76 576 91 HOH HOH . F 5 HOH E 77 577 92 HOH HOH . F 5 HOH E 78 578 93 HOH HOH . F 5 HOH E 79 579 94 HOH HOH . F 5 HOH E 80 580 100 HOH HOH . F 5 HOH E 81 581 101 HOH HOH . F 5 HOH E 82 582 103 HOH HOH . F 5 HOH E 83 583 104 HOH HOH . F 5 HOH E 84 584 105 HOH HOH . F 5 HOH E 85 585 106 HOH HOH . F 5 HOH E 86 586 107 HOH HOH . F 5 HOH E 87 587 108 HOH HOH . F 5 HOH E 88 588 109 HOH HOH . F 5 HOH E 89 589 111 HOH HOH . F 5 HOH E 90 590 112 HOH HOH . F 5 HOH E 91 591 113 HOH HOH . F 5 HOH E 92 592 115 HOH HOH . F 5 HOH E 93 593 116 HOH HOH . F 5 HOH E 94 594 117 HOH HOH . F 5 HOH E 95 595 118 HOH HOH . F 5 HOH E 96 596 119 HOH HOH . F 5 HOH E 97 597 120 HOH HOH . F 5 HOH E 98 598 121 HOH HOH . F 5 HOH E 99 599 122 HOH HOH . F 5 HOH E 100 600 123 HOH HOH . F 5 HOH E 101 601 124 HOH HOH . F 5 HOH E 102 602 125 HOH HOH . F 5 HOH E 103 603 126 HOH HOH . F 5 HOH E 104 604 127 HOH HOH . F 5 HOH E 105 605 128 HOH HOH . F 5 HOH E 106 606 129 HOH HOH . F 5 HOH E 107 607 130 HOH HOH . F 5 HOH E 108 608 131 HOH HOH . F 5 HOH E 109 609 132 HOH HOH . F 5 HOH E 110 610 133 HOH HOH . F 5 HOH E 111 611 134 HOH HOH . F 5 HOH E 112 612 135 HOH HOH . F 5 HOH E 113 613 136 HOH HOH . F 5 HOH E 114 614 137 HOH HOH . F 5 HOH E 115 615 138 HOH HOH . F 5 HOH E 116 616 139 HOH HOH . F 5 HOH E 117 617 140 HOH HOH . F 5 HOH E 118 618 141 HOH HOH . F 5 HOH E 119 619 142 HOH HOH . F 5 HOH E 120 620 143 HOH HOH . F 5 HOH E 121 621 144 HOH HOH . F 5 HOH E 122 622 145 HOH HOH . F 5 HOH E 123 623 146 HOH HOH . F 5 HOH E 124 624 147 HOH HOH . F 5 HOH E 125 625 148 HOH HOH . F 5 HOH E 126 626 149 HOH HOH . F 5 HOH E 127 627 150 HOH HOH . F 5 HOH E 128 628 151 HOH HOH . F 5 HOH E 129 629 152 HOH HOH . F 5 HOH E 130 630 153 HOH HOH . F 5 HOH E 131 631 154 HOH HOH . F 5 HOH E 132 632 155 HOH HOH . F 5 HOH E 133 633 158 HOH HOH . F 5 HOH E 134 634 162 HOH HOH . F 5 HOH E 135 635 163 HOH HOH . F 5 HOH E 136 636 164 HOH HOH . F 5 HOH E 137 637 165 HOH HOH . F 5 HOH E 138 638 166 HOH HOH . F 5 HOH E 139 639 167 HOH HOH . F 5 HOH E 140 640 168 HOH HOH . F 5 HOH E 141 641 169 HOH HOH . F 5 HOH E 142 642 170 HOH HOH . F 5 HOH E 143 643 173 HOH HOH . F 5 HOH E 144 644 174 HOH HOH . F 5 HOH E 145 645 176 HOH HOH . F 5 HOH E 146 646 177 HOH HOH . F 5 HOH E 147 647 178 HOH HOH . F 5 HOH E 148 648 179 HOH HOH . F 5 HOH E 149 649 180 HOH HOH . F 5 HOH E 150 650 181 HOH HOH . F 5 HOH E 151 651 182 HOH HOH . F 5 HOH E 152 652 183 HOH HOH . F 5 HOH E 153 653 184 HOH HOH . F 5 HOH E 154 654 185 HOH HOH . F 5 HOH E 155 655 186 HOH HOH . F 5 HOH E 156 656 187 HOH HOH . F 5 HOH E 157 657 188 HOH HOH . F 5 HOH E 158 658 189 HOH HOH . F 5 HOH E 159 659 190 HOH HOH . F 5 HOH E 160 660 191 HOH HOH . F 5 HOH E 161 661 192 HOH HOH . F 5 HOH E 162 662 193 HOH HOH . F 5 HOH E 163 663 195 HOH HOH . F 5 HOH E 164 664 196 HOH HOH . F 5 HOH E 165 665 197 HOH HOH . F 5 HOH E 166 666 198 HOH HOH . F 5 HOH E 167 667 200 HOH HOH . F 5 HOH E 168 668 201 HOH HOH . F 5 HOH E 169 669 202 HOH HOH . F 5 HOH E 170 670 203 HOH HOH . F 5 HOH E 171 671 204 HOH HOH . F 5 HOH E 172 672 205 HOH HOH . F 5 HOH E 173 673 206 HOH HOH . F 5 HOH E 174 674 207 HOH HOH . F 5 HOH E 175 675 208 HOH HOH . F 5 HOH E 176 676 209 HOH HOH . F 5 HOH E 177 677 210 HOH HOH . F 5 HOH E 178 678 211 HOH HOH . F 5 HOH E 179 679 212 HOH HOH . F 5 HOH E 180 680 213 HOH HOH . F 5 HOH E 181 681 214 HOH HOH . F 5 HOH E 182 682 215 HOH HOH . F 5 HOH E 183 683 216 HOH HOH . F 5 HOH E 184 684 217 HOH HOH . F 5 HOH E 185 685 218 HOH HOH . F 5 HOH E 186 686 219 HOH HOH . F 5 HOH E 187 687 220 HOH HOH . F 5 HOH E 188 688 221 HOH HOH . F 5 HOH E 189 689 222 HOH HOH . F 5 HOH E 190 690 223 HOH HOH . F 5 HOH E 191 691 224 HOH HOH . F 5 HOH E 192 692 225 HOH HOH . F 5 HOH E 193 693 226 HOH HOH . F 5 HOH E 194 694 227 HOH HOH . F 5 HOH E 195 695 228 HOH HOH . F 5 HOH E 196 696 229 HOH HOH . F 5 HOH E 197 697 230 HOH HOH . F 5 HOH E 198 698 231 HOH HOH . F 5 HOH E 199 699 232 HOH HOH . F 5 HOH E 200 700 233 HOH HOH . F 5 HOH E 201 701 234 HOH HOH . F 5 HOH E 202 702 235 HOH HOH . F 5 HOH E 203 703 236 HOH HOH . F 5 HOH E 204 704 237 HOH HOH . F 5 HOH E 205 705 238 HOH HOH . F 5 HOH E 206 706 239 HOH HOH . F 5 HOH E 207 707 240 HOH HOH . F 5 HOH E 208 708 241 HOH HOH . F 5 HOH E 209 709 242 HOH HOH . F 5 HOH E 210 710 243 HOH HOH . F 5 HOH E 211 711 244 HOH HOH . F 5 HOH E 212 712 245 HOH HOH . F 5 HOH E 213 713 246 HOH HOH . F 5 HOH E 214 714 247 HOH HOH . F 5 HOH E 215 715 248 HOH HOH . F 5 HOH E 216 716 249 HOH HOH . G 5 HOH A 1 101 8 HOH HOH . G 5 HOH A 2 102 9 HOH HOH . G 5 HOH A 3 103 10 HOH HOH . G 5 HOH A 4 104 11 HOH HOH . G 5 HOH A 5 105 32 HOH HOH . G 5 HOH A 6 106 34 HOH HOH . G 5 HOH A 7 107 35 HOH HOH . G 5 HOH A 8 108 36 HOH HOH . G 5 HOH A 9 109 66 HOH HOH . G 5 HOH A 10 110 67 HOH HOH . G 5 HOH A 11 111 68 HOH HOH . G 5 HOH A 12 112 69 HOH HOH . G 5 HOH A 13 113 70 HOH HOH . G 5 HOH A 14 114 78 HOH HOH . G 5 HOH A 15 115 79 HOH HOH . G 5 HOH A 16 116 95 HOH HOH . G 5 HOH A 17 117 96 HOH HOH . G 5 HOH A 18 118 97 HOH HOH . G 5 HOH A 19 119 98 HOH HOH . G 5 HOH A 20 120 99 HOH HOH . G 5 HOH A 21 121 102 HOH HOH . G 5 HOH A 22 122 110 HOH HOH . G 5 HOH A 23 123 114 HOH HOH . G 5 HOH A 24 124 156 HOH HOH . G 5 HOH A 25 125 157 HOH HOH . G 5 HOH A 26 126 159 HOH HOH . G 5 HOH A 27 127 160 HOH HOH . G 5 HOH A 28 128 161 HOH HOH . G 5 HOH A 29 129 171 HOH HOH . G 5 HOH A 30 130 172 HOH HOH . G 5 HOH A 31 131 175 HOH HOH . G 5 HOH A 32 132 194 HOH HOH . G 5 HOH A 33 133 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -21.768 _atom_site.Cartn_y 8.08 _atom_site.Cartn_z -3.159 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #