data_4DGD
#
_model_server_result.job_id            vk_Lq1fonMT5uxXSfBq6_Q 
_model_server_result.datetime_utc      '2024-11-01 01:20:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":200}' 
#
_entry.id    4DGD 
#
_exptl.entry_id    4DGD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DGD 
_cell.length_a            36.32 
_cell.length_b            55.95 
_cell.length_c            70.91 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4DGD 
_atom_sites.fract_transf_matrix[1][1]    0.027533 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 200 200 GOL GOL . 
C 3 HOH A 1 301 1 HOH HOH . 
C 3 HOH A 2 302 2 HOH HOH . 
C 3 HOH A 3 303 3 HOH HOH . 
C 3 HOH A 4 304 4 HOH HOH . 
C 3 HOH A 5 305 5 HOH HOH . 
C 3 HOH A 6 306 6 HOH HOH . 
C 3 HOH A 7 307 7 HOH HOH . 
C 3 HOH A 8 308 8 HOH HOH . 
C 3 HOH A 9 309 9 HOH HOH . 
C 3 HOH A 10 310 10 HOH HOH . 
C 3 HOH A 11 311 11 HOH HOH . 
C 3 HOH A 12 312 12 HOH HOH . 
C 3 HOH A 13 313 13 HOH HOH . 
C 3 HOH A 14 314 14 HOH HOH . 
C 3 HOH A 15 315 15 HOH HOH . 
C 3 HOH A 16 316 16 HOH HOH . 
C 3 HOH A 17 317 17 HOH HOH . 
C 3 HOH A 18 318 18 HOH HOH . 
C 3 HOH A 19 319 19 HOH HOH . 
C 3 HOH A 20 320 20 HOH HOH . 
C 3 HOH A 21 321 21 HOH HOH . 
C 3 HOH A 22 322 22 HOH HOH . 
C 3 HOH A 23 323 23 HOH HOH . 
C 3 HOH A 24 324 24 HOH HOH . 
C 3 HOH A 25 325 25 HOH HOH . 
C 3 HOH A 26 326 26 HOH HOH . 
C 3 HOH A 27 327 27 HOH HOH . 
C 3 HOH A 28 328 28 HOH HOH . 
C 3 HOH A 29 329 29 HOH HOH . 
C 3 HOH A 30 330 30 HOH HOH . 
C 3 HOH A 31 331 31 HOH HOH . 
C 3 HOH A 32 332 32 HOH HOH . 
C 3 HOH A 33 333 33 HOH HOH . 
C 3 HOH A 34 334 34 HOH HOH . 
C 3 HOH A 35 335 35 HOH HOH . 
C 3 HOH A 36 336 36 HOH HOH . 
C 3 HOH A 37 337 37 HOH HOH . 
C 3 HOH A 38 338 38 HOH HOH . 
C 3 HOH A 39 339 39 HOH HOH . 
C 3 HOH A 40 340 40 HOH HOH . 
C 3 HOH A 41 341 41 HOH HOH . 
C 3 HOH A 42 342 42 HOH HOH . 
C 3 HOH A 43 343 43 HOH HOH . 
C 3 HOH A 44 344 44 HOH HOH . 
C 3 HOH A 45 345 45 HOH HOH . 
C 3 HOH A 46 346 46 HOH HOH . 
C 3 HOH A 47 347 47 HOH HOH . 
C 3 HOH A 48 348 48 HOH HOH . 
C 3 HOH A 49 349 49 HOH HOH . 
C 3 HOH A 50 350 50 HOH HOH . 
C 3 HOH A 51 351 51 HOH HOH . 
C 3 HOH A 52 352 52 HOH HOH . 
C 3 HOH A 53 353 53 HOH HOH . 
C 3 HOH A 54 354 54 HOH HOH . 
C 3 HOH A 55 355 55 HOH HOH . 
C 3 HOH A 56 356 56 HOH HOH . 
C 3 HOH A 57 357 57 HOH HOH . 
C 3 HOH A 58 358 58 HOH HOH . 
C 3 HOH A 59 359 59 HOH HOH . 
C 3 HOH A 60 360 60 HOH HOH . 
C 3 HOH A 61 361 61 HOH HOH . 
C 3 HOH A 62 362 62 HOH HOH . 
C 3 HOH A 63 363 63 HOH HOH . 
C 3 HOH A 64 364 64 HOH HOH . 
C 3 HOH A 65 365 65 HOH HOH . 
C 3 HOH A 66 366 66 HOH HOH . 
C 3 HOH A 67 367 67 HOH HOH . 
C 3 HOH A 68 368 68 HOH HOH . 
C 3 HOH A 69 369 69 HOH HOH . 
C 3 HOH A 70 370 70 HOH HOH . 
C 3 HOH A 71 371 71 HOH HOH . 
C 3 HOH A 72 372 72 HOH HOH . 
C 3 HOH A 73 373 73 HOH HOH . 
C 3 HOH A 74 374 74 HOH HOH . 
C 3 HOH A 75 375 75 HOH HOH . 
C 3 HOH A 76 376 76 HOH HOH . 
C 3 HOH A 77 377 77 HOH HOH . 
C 3 HOH A 78 378 78 HOH HOH . 
C 3 HOH A 79 379 79 HOH HOH . 
C 3 HOH A 80 380 80 HOH HOH . 
C 3 HOH A 81 381 81 HOH HOH . 
C 3 HOH A 82 382 82 HOH HOH . 
C 3 HOH A 83 383 83 HOH HOH . 
C 3 HOH A 84 384 84 HOH HOH . 
C 3 HOH A 85 385 85 HOH HOH . 
C 3 HOH A 86 386 86 HOH HOH . 
C 3 HOH A 87 387 87 HOH HOH . 
C 3 HOH A 88 388 88 HOH HOH . 
C 3 HOH A 89 389 89 HOH HOH . 
C 3 HOH A 90 390 90 HOH HOH . 
C 3 HOH A 91 391 91 HOH HOH . 
C 3 HOH A 92 392 92 HOH HOH . 
C 3 HOH A 93 393 93 HOH HOH . 
C 3 HOH A 94 394 94 HOH HOH . 
C 3 HOH A 95 395 95 HOH HOH . 
C 3 HOH A 96 396 96 HOH HOH . 
C 3 HOH A 97 397 97 HOH HOH . 
C 3 HOH A 98 398 98 HOH HOH . 
C 3 HOH A 99 399 99 HOH HOH . 
C 3 HOH A 100 400 100 HOH HOH . 
C 3 HOH A 101 401 101 HOH HOH . 
C 3 HOH A 102 402 102 HOH HOH . 
C 3 HOH A 103 403 103 HOH HOH . 
C 3 HOH A 104 404 104 HOH HOH . 
C 3 HOH A 105 405 105 HOH HOH . 
C 3 HOH A 106 406 106 HOH HOH . 
C 3 HOH A 107 407 107 HOH HOH . 
C 3 HOH A 108 408 108 HOH HOH . 
C 3 HOH A 109 409 109 HOH HOH . 
C 3 HOH A 110 410 110 HOH HOH . 
C 3 HOH A 111 411 111 HOH HOH . 
C 3 HOH A 112 412 112 HOH HOH . 
C 3 HOH A 113 413 113 HOH HOH . 
C 3 HOH A 114 414 114 HOH HOH . 
C 3 HOH A 115 415 115 HOH HOH . 
C 3 HOH A 116 416 116 HOH HOH . 
C 3 HOH A 117 417 117 HOH HOH . 
C 3 HOH A 118 418 118 HOH HOH . 
C 3 HOH A 119 419 119 HOH HOH . 
C 3 HOH A 120 420 120 HOH HOH . 
C 3 HOH A 121 421 121 HOH HOH . 
C 3 HOH A 122 422 122 HOH HOH . 
C 3 HOH A 123 423 123 HOH HOH . 
C 3 HOH A 124 424 124 HOH HOH . 
C 3 HOH A 125 425 125 HOH HOH . 
C 3 HOH A 126 426 126 HOH HOH . 
C 3 HOH A 127 427 127 HOH HOH . 
C 3 HOH A 128 428 128 HOH HOH . 
C 3 HOH A 129 429 129 HOH HOH . 
C 3 HOH A 130 430 130 HOH HOH . 
C 3 HOH A 131 431 131 HOH HOH . 
C 3 HOH A 132 432 132 HOH HOH . 
C 3 HOH A 133 433 133 HOH HOH . 
C 3 HOH A 134 434 134 HOH HOH . 
C 3 HOH A 135 435 135 HOH HOH . 
C 3 HOH A 136 436 136 HOH HOH . 
C 3 HOH A 137 437 137 HOH HOH . 
C 3 HOH A 138 438 138 HOH HOH . 
C 3 HOH A 139 439 139 HOH HOH . 
C 3 HOH A 140 440 140 HOH HOH . 
C 3 HOH A 141 441 141 HOH HOH . 
C 3 HOH A 142 442 142 HOH HOH . 
C 3 HOH A 143 443 143 HOH HOH . 
C 3 HOH A 144 444 144 HOH HOH . 
C 3 HOH A 145 445 145 HOH HOH . 
C 3 HOH A 146 446 146 HOH HOH . 
C 3 HOH A 147 447 147 HOH HOH . 
C 3 HOH A 148 448 148 HOH HOH . 
C 3 HOH A 149 449 149 HOH HOH . 
C 3 HOH A 150 450 150 HOH HOH . 
C 3 HOH A 151 451 151 HOH HOH . 
C 3 HOH A 152 452 152 HOH HOH . 
C 3 HOH A 153 453 153 HOH HOH . 
C 3 HOH A 154 454 154 HOH HOH . 
C 3 HOH A 155 455 155 HOH HOH . 
C 3 HOH A 156 456 156 HOH HOH . 
C 3 HOH A 157 457 157 HOH HOH . 
C 3 HOH A 158 458 158 HOH HOH . 
C 3 HOH A 159 459 159 HOH HOH . 
C 3 HOH A 160 460 160 HOH HOH . 
C 3 HOH A 161 461 161 HOH HOH . 
C 3 HOH A 162 462 162 HOH HOH . 
C 3 HOH A 163 463 163 HOH HOH . 
C 3 HOH A 164 464 164 HOH HOH . 
C 3 HOH A 165 465 165 HOH HOH . 
C 3 HOH A 166 466 166 HOH HOH . 
C 3 HOH A 167 467 167 HOH HOH . 
C 3 HOH A 168 468 168 HOH HOH . 
C 3 HOH A 169 469 169 HOH HOH . 
C 3 HOH A 170 470 170 HOH HOH . 
C 3 HOH A 171 471 171 HOH HOH . 
C 3 HOH A 172 472 172 HOH HOH . 
C 3 HOH A 173 473 173 HOH HOH . 
C 3 HOH A 174 474 174 HOH HOH . 
C 3 HOH A 175 475 175 HOH HOH . 
C 3 HOH A 176 476 176 HOH HOH . 
C 3 HOH A 177 477 177 HOH HOH . 
C 3 HOH A 178 478 178 HOH HOH . 
C 3 HOH A 179 479 179 HOH HOH . 
C 3 HOH A 180 480 180 HOH HOH . 
C 3 HOH A 181 481 181 HOH HOH . 
C 3 HOH A 182 482 182 HOH HOH . 
C 3 HOH A 183 483 183 HOH HOH . 
C 3 HOH A 184 484 184 HOH HOH . 
C 3 HOH A 185 485 185 HOH HOH . 
C 3 HOH A 186 486 186 HOH HOH . 
C 3 HOH A 187 487 187 HOH HOH . 
C 3 HOH A 188 488 188 HOH HOH . 
C 3 HOH A 189 489 189 HOH HOH . 
C 3 HOH A 190 490 190 HOH HOH . 
C 3 HOH A 191 491 191 HOH HOH . 
C 3 HOH A 192 492 192 HOH HOH . 
C 3 HOH A 193 493 193 HOH HOH . 
C 3 HOH A 194 494 194 HOH HOH . 
C 3 HOH A 195 495 195 HOH HOH . 
C 3 HOH A 196 496 196 HOH HOH . 
C 3 HOH A 197 497 197 HOH HOH . 
C 3 HOH A 198 498 198 HOH HOH . 
C 3 HOH A 199 499 199 HOH HOH . 
C 3 HOH A 200 500 200 HOH HOH . 
C 3 HOH A 201 501 201 HOH HOH . 
C 3 HOH A 202 502 202 HOH HOH . 
C 3 HOH A 203 503 203 HOH HOH . 
C 3 HOH A 204 504 204 HOH HOH . 
C 3 HOH A 205 505 205 HOH HOH . 
C 3 HOH A 206 506 206 HOH HOH . 
C 3 HOH A 207 507 207 HOH HOH . 
C 3 HOH A 208 508 208 HOH HOH . 
C 3 HOH A 209 509 209 HOH HOH . 
C 3 HOH A 210 510 210 HOH HOH . 
C 3 HOH A 211 511 211 HOH HOH . 
C 3 HOH A 212 512 212 HOH HOH . 
C 3 HOH A 213 513 213 HOH HOH . 
C 3 HOH A 214 514 214 HOH HOH . 
C 3 HOH A 215 515 215 HOH HOH . 
C 3 HOH A 216 516 216 HOH HOH . 
C 3 HOH A 217 517 217 HOH HOH . 
C 3 HOH A 218 518 218 HOH HOH . 
C 3 HOH A 219 519 219 HOH HOH . 
C 3 HOH A 220 520 220 HOH HOH . 
C 3 HOH A 221 521 221 HOH HOH . 
C 3 HOH A 222 522 222 HOH HOH . 
C 3 HOH A 223 523 223 HOH HOH . 
C 3 HOH A 224 524 224 HOH HOH . 
C 3 HOH A 225 525 225 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 3.642 -2.044 14.553 1 19.76 ? C1 GOL 200 A 1 
HETATM 2 O O1 GOL . . . B 2 4.917 -2.41 15.102 1 19.47 ? O1 GOL 200 A 1 
HETATM 3 C C2 GOL . . . B 2 2.454 -2.595 15.332 1 20.42 ? C2 GOL 200 A 1 
HETATM 4 O O2 GOL . . . B 2 2.458 -4.016 15.292 1 24.99 ? O2 GOL 200 A 1 
HETATM 5 C C3 GOL . . . B 2 2.491 -2.151 16.778 1 20.63 ? C3 GOL 200 A 1 
HETATM 6 O O3 GOL . . . B 2 1.18 -2.361 17.356 1 21.36 ? O3 GOL 200 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#