data_4DGG # _model_server_result.job_id JFJ8FvPSzjNiTh8vfi3I7g _model_server_result.datetime_utc '2024-11-15 08:30:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dgg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4DGG # _exptl.entry_id 4DGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.928 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{6-[(3-chlorobenzyl)oxy]naphthalen-2-yl}-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 78.73 _cell.angle_beta 88.48 _cell.angle_gamma 89.93 _cell.entry_id 4DGG _cell.length_a 42.17 _cell.length_b 63.48 _cell.length_c 74 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H22 Cl N5 O' _chem_comp.formula_weight 443.928 _chem_comp.id I76 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{6-[(3-chlorobenzyl)oxy]naphthalen-2-yl}-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CBE I76 sing 152 n n CBE NBF I76 sing 153 n n CBE CAA I76 sing 154 n n N3 C2 I76 doub 155 n y N3 C4 I76 sing 156 n y C2 N1 I76 sing 157 n y NBF C4 I76 sing 158 n y NBF NAS I76 sing 159 n y C4 C5 I76 doub 160 n y CAI CAK I76 doub 161 n y CAI CAY I76 sing 162 n y N1 C6 I76 doub 163 n y NAS CAZ I76 doub 164 n y C5 C6 I76 sing 165 n y C5 CAZ I76 sing 166 n y C6 NAC I76 sing 167 n n CAK CBA I76 sing 168 n y CAZ CAY I76 sing 169 n n CAY CAO I76 doub 170 n y CBA CAN I76 doub 171 n y CBA CBB I76 sing 172 n y CAN CAW I76 sing 173 n y CAO CBB I76 sing 174 n y CLD CAU I76 sing 175 n n CBB CAJ I76 doub 176 n y CAM CAV I76 doub 177 n y CAM CAU I76 sing 178 n y CAP CAV I76 sing 179 n n CAP OAT I76 sing 180 n n CAW OAT I76 sing 181 n n CAW CAH I76 doub 182 n y CAV CAG I76 sing 183 n y CAU CAF I76 doub 184 n y CAJ CAH I76 sing 185 n y CAG CAE I76 doub 186 n y CAF CAE I76 sing 187 n y CAA H1 I76 sing 188 n n CAA H2 I76 sing 189 n n CAA H3 I76 sing 190 n n CBE H4 I76 sing 191 n n CAB H5 I76 sing 192 n n CAB H6 I76 sing 193 n n CAB H7 I76 sing 194 n n C2 H8 I76 sing 195 n n NAC H9 I76 sing 196 n n NAC H10 I76 sing 197 n n CAO H11 I76 sing 198 n n CAI H12 I76 sing 199 n n CAK H13 I76 sing 200 n n CAN H14 I76 sing 201 n n CAJ H15 I76 sing 202 n n CAH H16 I76 sing 203 n n CAP H17 I76 sing 204 n n CAP H18 I76 sing 205 n n CAM H19 I76 sing 206 n n CAF H20 I76 sing 207 n n CAE H21 I76 sing 208 n n CAG H22 I76 sing 209 n n # _atom_sites.entry_id 4DGG _atom_sites.fract_transf_matrix[1][1] 0.023714 _atom_sites.fract_transf_matrix[1][2] -0.000029 _atom_sites.fract_transf_matrix[1][3] -0.000636 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015753 _atom_sites.fract_transf_matrix[2][3] -0.00314 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I76 A 1 601 1 I76 I76 . D 2 I76 B 1 601 1 I76 I76 . E 3 HOH A 1 701 2 HOH HOH . E 3 HOH A 2 702 3 HOH HOH . E 3 HOH A 3 703 6 HOH HOH . E 3 HOH A 4 704 9 HOH HOH . E 3 HOH A 5 705 11 HOH HOH . E 3 HOH A 6 706 12 HOH HOH . E 3 HOH A 7 707 13 HOH HOH . F 3 HOH B 1 701 1 HOH HOH . F 3 HOH B 2 702 4 HOH HOH . F 3 HOH B 3 703 5 HOH HOH . F 3 HOH B 4 704 7 HOH HOH . F 3 HOH B 5 705 8 HOH HOH . F 3 HOH B 6 706 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA I76 . . . C 2 -8.11 -40.82 5.14 1 35.38 ? CAA I76 601 A 1 HETATM 2 C CBE I76 . . . C 2 -8.821 -39.571 4.581 1 33.76 ? CBE I76 601 A 1 HETATM 3 C CAB I76 . . . C 2 -8.436 -39.283 3.119 1 33.04 ? CAB I76 601 A 1 HETATM 4 N NBF I76 . . . C 2 -8.496 -38.433 5.45 1 30.82 ? NBF I76 601 A 1 HETATM 5 N NAS I76 . . . C 2 -7.366 -38.202 5.882 1 29.69 ? NAS I76 601 A 1 HETATM 6 C C4 I76 . . . C 2 -9.414 -37.565 5.863 1 29.55 ? C4 I76 601 A 1 HETATM 7 N N3 I76 . . . C 2 -10.744 -37.463 5.636 1 27.41 ? N3 I76 601 A 1 HETATM 8 C C2 I76 . . . C 2 -11.421 -36.469 6.194 1 26.22 ? C2 I76 601 A 1 HETATM 9 N N1 I76 . . . C 2 -10.823 -35.556 6.968 1 26.08 ? N1 I76 601 A 1 HETATM 10 C C6 I76 . . . C 2 -9.502 -35.602 7.238 1 27.1 ? C6 I76 601 A 1 HETATM 11 N NAC I76 . . . C 2 -8.97 -34.657 8.016 1 25.61 ? NAC I76 601 A 1 HETATM 12 C C5 I76 . . . C 2 -8.741 -36.648 6.675 1 29.5 ? C5 I76 601 A 1 HETATM 13 C CAZ I76 . . . C 2 -7.408 -37.116 6.654 1 31.62 ? CAZ I76 601 A 1 HETATM 14 C CAY I76 . . . C 2 -6.27 -36.615 7.287 1 34.95 ? CAY I76 601 A 1 HETATM 15 C CAO I76 . . . C 2 -6.188 -36.377 8.664 1 37.93 ? CAO I76 601 A 1 HETATM 16 C CAI I76 . . . C 2 -5.135 -36.438 6.505 1 37.99 ? CAI I76 601 A 1 HETATM 17 C CAK I76 . . . C 2 -3.938 -35.983 7.041 1 39.91 ? CAK I76 601 A 1 HETATM 18 C CBA I76 . . . C 2 -3.854 -35.723 8.395 1 41.73 ? CBA I76 601 A 1 HETATM 19 C CAN I76 . . . C 2 -2.64 -35.268 8.908 1 45.39 ? CAN I76 601 A 1 HETATM 20 C CBB I76 . . . C 2 -4.978 -35.917 9.214 1 41.52 ? CBB I76 601 A 1 HETATM 21 C CAJ I76 . . . C 2 -4.87 -35.65 10.578 1 42.49 ? CAJ I76 601 A 1 HETATM 22 C CAH I76 . . . C 2 -3.651 -35.191 11.096 1 45.89 ? CAH I76 601 A 1 HETATM 23 C CAW I76 . . . C 2 -2.533 -35.007 10.272 1 49.43 ? CAW I76 601 A 1 HETATM 24 O OAT I76 . . . C 2 -1.359 -34.521 10.785 1 57.04 ? OAT I76 601 A 1 HETATM 25 C CAP I76 . . . C 2 -0.238 -35.396 11.01 1 63.54 ? CAP I76 601 A 1 HETATM 26 C CAV I76 . . . C 2 0.585 -35.088 12.091 1 66.07 ? CAV I76 601 A 1 HETATM 27 C CAM I76 . . . C 2 0.231 -34.021 12.906 1 67.11 ? CAM I76 601 A 1 HETATM 28 C CAU I76 . . . C 2 1.017 -33.688 14.001 1 69.92 ? CAU I76 601 A 1 HETATM 29 CL CLD I76 . . . C 2 0.532 -32.362 15.001 1 81.69 ? CLD I76 601 A 1 HETATM 30 C CAF I76 . . . C 2 2.169 -34.417 14.289 1 68.77 ? CAF I76 601 A 1 HETATM 31 C CAE I76 . . . C 2 2.532 -35.485 13.469 1 67.75 ? CAE I76 601 A 1 HETATM 32 C CAG I76 . . . C 2 1.737 -35.824 12.373 1 67.3 ? CAG I76 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #