data_4DGG
#
_model_server_result.job_id            cFDCxXOr8fnl7yhlwqQFZg 
_model_server_result.datetime_utc      '2024-11-15 08:37:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dgg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    4DGG 
#
_exptl.entry_id    4DGG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.928 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-{6-[(3-chlorobenzyl)oxy]naphthalen-2-yl}-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.73 
_cell.angle_beta          88.48 
_cell.angle_gamma         89.93 
_cell.entry_id            4DGG 
_cell.length_a            42.17 
_cell.length_b            63.48 
_cell.length_c            74 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C25 H22 Cl N5 O' 
_chem_comp.formula_weight    443.928 
_chem_comp.id                I76 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-{6-[(3-chlorobenzyl)oxy]naphthalen-2-yl}-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CBE I76 sing 152 n n 
CBE NBF I76 sing 153 n n 
CBE CAA I76 sing 154 n n 
N3 C2 I76 doub 155 n y 
N3 C4 I76 sing 156 n y 
C2 N1 I76 sing 157 n y 
NBF C4 I76 sing 158 n y 
NBF NAS I76 sing 159 n y 
C4 C5 I76 doub 160 n y 
CAI CAK I76 doub 161 n y 
CAI CAY I76 sing 162 n y 
N1 C6 I76 doub 163 n y 
NAS CAZ I76 doub 164 n y 
C5 C6 I76 sing 165 n y 
C5 CAZ I76 sing 166 n y 
C6 NAC I76 sing 167 n n 
CAK CBA I76 sing 168 n y 
CAZ CAY I76 sing 169 n n 
CAY CAO I76 doub 170 n y 
CBA CAN I76 doub 171 n y 
CBA CBB I76 sing 172 n y 
CAN CAW I76 sing 173 n y 
CAO CBB I76 sing 174 n y 
CLD CAU I76 sing 175 n n 
CBB CAJ I76 doub 176 n y 
CAM CAV I76 doub 177 n y 
CAM CAU I76 sing 178 n y 
CAP CAV I76 sing 179 n n 
CAP OAT I76 sing 180 n n 
CAW OAT I76 sing 181 n n 
CAW CAH I76 doub 182 n y 
CAV CAG I76 sing 183 n y 
CAU CAF I76 doub 184 n y 
CAJ CAH I76 sing 185 n y 
CAG CAE I76 doub 186 n y 
CAF CAE I76 sing 187 n y 
CAA H1 I76 sing 188 n n 
CAA H2 I76 sing 189 n n 
CAA H3 I76 sing 190 n n 
CBE H4 I76 sing 191 n n 
CAB H5 I76 sing 192 n n 
CAB H6 I76 sing 193 n n 
CAB H7 I76 sing 194 n n 
C2 H8 I76 sing 195 n n 
NAC H9 I76 sing 196 n n 
NAC H10 I76 sing 197 n n 
CAO H11 I76 sing 198 n n 
CAI H12 I76 sing 199 n n 
CAK H13 I76 sing 200 n n 
CAN H14 I76 sing 201 n n 
CAJ H15 I76 sing 202 n n 
CAH H16 I76 sing 203 n n 
CAP H17 I76 sing 204 n n 
CAP H18 I76 sing 205 n n 
CAM H19 I76 sing 206 n n 
CAF H20 I76 sing 207 n n 
CAE H21 I76 sing 208 n n 
CAG H22 I76 sing 209 n n 
#
_atom_sites.entry_id                     4DGG 
_atom_sites.fract_transf_matrix[1][1]    0.023714 
_atom_sites.fract_transf_matrix[1][2]    -0.000029 
_atom_sites.fract_transf_matrix[1][3]    -0.000636 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015753 
_atom_sites.fract_transf_matrix[2][3]    -0.00314 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013784 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 I76 A 1 601 1 I76 I76 . 
D 2 I76 B 1 601 1 I76 I76 . 
E 3 HOH A 1 701 2 HOH HOH . 
E 3 HOH A 2 702 3 HOH HOH . 
E 3 HOH A 3 703 6 HOH HOH . 
E 3 HOH A 4 704 9 HOH HOH . 
E 3 HOH A 5 705 11 HOH HOH . 
E 3 HOH A 6 706 12 HOH HOH . 
E 3 HOH A 7 707 13 HOH HOH . 
F 3 HOH B 1 701 1 HOH HOH . 
F 3 HOH B 2 702 4 HOH HOH . 
F 3 HOH B 3 703 5 HOH HOH . 
F 3 HOH B 4 704 7 HOH HOH . 
F 3 HOH B 5 705 8 HOH HOH . 
F 3 HOH B 6 706 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA I76 . . . D 2 -4.531 -72.667 -29.629 1 30.5 ? CAA I76 601 B 1 
HETATM 2 C CBE I76 . . . D 2 -3.921 -71.359 -29.12 1 31.12 ? CBE I76 601 B 1 
HETATM 3 C CAB I76 . . . D 2 -4.493 -70.962 -27.747 1 28.47 ? CAB I76 601 B 1 
HETATM 4 N NBF I76 . . . D 2 -4.179 -70.249 -30.063 1 31.15 ? NBF I76 601 B 1 
HETATM 5 N NAS I76 . . . D 2 -5.309 -69.952 -30.425 1 32.03 ? NAS I76 601 B 1 
HETATM 6 C C4 I76 . . . D 2 -3.252 -69.446 -30.584 1 30.57 ? C4 I76 601 B 1 
HETATM 7 N N3 I76 . . . D 2 -1.912 -69.371 -30.466 1 30.12 ? N3 I76 601 B 1 
HETATM 8 C C2 I76 . . . D 2 -1.228 -68.438 -31.121 1 28.75 ? C2 I76 601 B 1 
HETATM 9 N N1 I76 . . . D 2 -1.839 -67.548 -31.89 1 28.67 ? N1 I76 601 B 1 
HETATM 10 C C6 I76 . . . D 2 -3.171 -67.573 -32.043 1 29.14 ? C6 I76 601 B 1 
HETATM 11 N NAC I76 . . . D 2 -3.744 -66.676 -32.821 1 29.22 ? NAC I76 601 B 1 
HETATM 12 C C5 I76 . . . D 2 -3.923 -68.541 -31.382 1 30.99 ? C5 I76 601 B 1 
HETATM 13 C CAZ I76 . . . D 2 -5.267 -68.912 -31.247 1 34.08 ? CAZ I76 601 B 1 
HETATM 14 C CAY I76 . . . D 2 -6.448 -68.374 -31.786 1 36.45 ? CAY I76 601 B 1 
HETATM 15 C CAO I76 . . . D 2 -6.712 -68.139 -33.137 1 36.45 ? CAO I76 601 B 1 
HETATM 16 C CAI I76 . . . D 2 -7.441 -68.113 -30.838 1 37.61 ? CAI I76 601 B 1 
HETATM 17 C CAK I76 . . . D 2 -8.685 -67.609 -31.2 1 39.35 ? CAK I76 601 B 1 
HETATM 18 C CBA I76 . . . D 2 -8.947 -67.372 -32.531 1 40.06 ? CBA I76 601 B 1 
HETATM 19 C CAN I76 . . . D 2 -10.196 -66.873 -32.865 1 43.36 ? CAN I76 601 B 1 
HETATM 20 C CBB I76 . . . D 2 -7.963 -67.636 -33.499 1 39.04 ? CBB I76 601 B 1 
HETATM 21 C CAJ I76 . . . D 2 -8.24 -67.396 -34.837 1 40.37 ? CAJ I76 601 B 1 
HETATM 22 C CAH I76 . . . D 2 -9.489 -66.89 -35.18 1 43.4 ? CAH I76 601 B 1 
HETATM 23 C CAW I76 . . . D 2 -10.46 -66.624 -34.21 1 47.68 ? CAW I76 601 B 1 
HETATM 24 O OAT I76 . . . D 2 -11.663 -66.148 -34.629 1 55.46 ? OAT I76 601 B 1 
HETATM 25 C CAP I76 . . . D 2 -12.463 -65.383 -33.714 1 64.94 ? CAP I76 601 B 1 
HETATM 26 C CAV I76 . . . D 2 -13.607 -64.776 -34.242 1 79.31 ? CAV I76 601 B 1 
HETATM 27 C CAM I76 . . . D 2 -13.918 -64.982 -35.584 1 86.39 ? CAM I76 601 B 1 
HETATM 28 C CAU I76 . . . D 2 -15.047 -64.393 -36.142 1 93.43 ? CAU I76 601 B 1 
HETATM 29 CL CLD I76 . . . D 2 -15.4 -64.671 -37.813 1 101.53 ? CLD I76 601 B 1 
HETATM 30 C CAF I76 . . . D 2 -15.882 -63.591 -35.362 1 90.74 ? CAF I76 601 B 1 
HETATM 31 C CAE I76 . . . D 2 -15.58 -63.38 -34.019 1 87.26 ? CAE I76 601 B 1 
HETATM 32 C CAG I76 . . . D 2 -14.443 -63.974 -33.464 1 81.69 ? CAG I76 601 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#