data_4DGI
#
_model_server_result.job_id            SABL0sjR0LSBoq7wbuS0iQ 
_model_server_result.datetime_utc      '2024-10-12 12:24:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dgi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    4DGI 
#
_exptl.entry_id    4DGI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.08 
_cell.angle_gamma         90 
_cell.entry_id            4DGI 
_cell.length_a            83.53 
_cell.length_b            105.92 
_cell.length_c            76.23 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DGI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 60 A CYS 179 1_555 A SG CYS 95 A CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
disulf ? disulf3 B SG CYS 145 H CYS 145 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf5 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 C OE1 GLU 81 L GLU 81 1_555 D NA NA . L NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc2 C OE1 GLU 79 L GLU 79 1_555 D NA NA . L NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DGI 
_atom_sites.fract_transf_matrix[1][1]    0.011972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001064 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009441 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01317 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NA L 1 300 300 NA NA . 
E 5 HOH A 1 301 2 HOH HOH . 
E 5 HOH A 2 302 14 HOH HOH . 
E 5 HOH A 3 303 20 HOH HOH . 
E 5 HOH A 4 304 29 HOH HOH . 
E 5 HOH A 5 305 31 HOH HOH . 
E 5 HOH A 6 306 61 HOH HOH . 
E 5 HOH A 7 307 78 HOH HOH . 
E 5 HOH A 8 308 84 HOH HOH . 
E 5 HOH A 9 309 93 HOH HOH . 
E 5 HOH A 10 310 100 HOH HOH . 
E 5 HOH A 11 311 107 HOH HOH . 
E 5 HOH A 12 312 118 HOH HOH . 
E 5 HOH A 13 313 133 HOH HOH . 
E 5 HOH A 14 314 137 HOH HOH . 
E 5 HOH A 15 315 145 HOH HOH . 
E 5 HOH A 16 316 161 HOH HOH . 
E 5 HOH A 17 317 162 HOH HOH . 
E 5 HOH A 18 318 163 HOH HOH . 
E 5 HOH A 19 319 164 HOH HOH . 
E 5 HOH A 20 320 165 HOH HOH . 
E 5 HOH A 21 321 173 HOH HOH . 
F 5 HOH H 1 301 1 HOH HOH . 
F 5 HOH H 2 302 3 HOH HOH . 
F 5 HOH H 3 303 5 HOH HOH . 
F 5 HOH H 4 304 6 HOH HOH . 
F 5 HOH H 5 305 8 HOH HOH . 
F 5 HOH H 6 306 9 HOH HOH . 
F 5 HOH H 7 307 10 HOH HOH . 
F 5 HOH H 8 308 11 HOH HOH . 
F 5 HOH H 9 309 16 HOH HOH . 
F 5 HOH H 10 310 17 HOH HOH . 
F 5 HOH H 11 311 18 HOH HOH . 
F 5 HOH H 12 312 21 HOH HOH . 
F 5 HOH H 13 313 24 HOH HOH . 
F 5 HOH H 14 314 25 HOH HOH . 
F 5 HOH H 15 315 26 HOH HOH . 
F 5 HOH H 16 316 27 HOH HOH . 
F 5 HOH H 17 317 28 HOH HOH . 
F 5 HOH H 18 318 33 HOH HOH . 
F 5 HOH H 19 319 38 HOH HOH . 
F 5 HOH H 20 320 40 HOH HOH . 
F 5 HOH H 21 321 42 HOH HOH . 
F 5 HOH H 22 322 44 HOH HOH . 
F 5 HOH H 23 323 45 HOH HOH . 
F 5 HOH H 24 324 46 HOH HOH . 
F 5 HOH H 25 325 47 HOH HOH . 
F 5 HOH H 26 326 48 HOH HOH . 
F 5 HOH H 27 327 50 HOH HOH . 
F 5 HOH H 28 328 51 HOH HOH . 
F 5 HOH H 29 329 52 HOH HOH . 
F 5 HOH H 30 330 53 HOH HOH . 
F 5 HOH H 31 331 55 HOH HOH . 
F 5 HOH H 32 332 57 HOH HOH . 
F 5 HOH H 33 333 60 HOH HOH . 
F 5 HOH H 34 334 62 HOH HOH . 
F 5 HOH H 35 335 63 HOH HOH . 
F 5 HOH H 36 336 64 HOH HOH . 
F 5 HOH H 37 337 65 HOH HOH . 
F 5 HOH H 38 338 67 HOH HOH . 
F 5 HOH H 39 339 68 HOH HOH . 
F 5 HOH H 40 340 69 HOH HOH . 
F 5 HOH H 41 341 70 HOH HOH . 
F 5 HOH H 42 342 71 HOH HOH . 
F 5 HOH H 43 343 72 HOH HOH . 
F 5 HOH H 44 344 74 HOH HOH . 
F 5 HOH H 45 345 75 HOH HOH . 
F 5 HOH H 46 346 76 HOH HOH . 
F 5 HOH H 47 347 80 HOH HOH . 
F 5 HOH H 48 348 82 HOH HOH . 
F 5 HOH H 49 349 86 HOH HOH . 
F 5 HOH H 50 350 87 HOH HOH . 
F 5 HOH H 51 351 89 HOH HOH . 
F 5 HOH H 52 352 90 HOH HOH . 
F 5 HOH H 53 353 92 HOH HOH . 
F 5 HOH H 54 354 94 HOH HOH . 
F 5 HOH H 55 355 95 HOH HOH . 
F 5 HOH H 56 356 96 HOH HOH . 
F 5 HOH H 57 357 98 HOH HOH . 
F 5 HOH H 58 358 99 HOH HOH . 
F 5 HOH H 59 359 101 HOH HOH . 
F 5 HOH H 60 360 102 HOH HOH . 
F 5 HOH H 61 361 104 HOH HOH . 
F 5 HOH H 62 362 105 HOH HOH . 
F 5 HOH H 63 363 108 HOH HOH . 
F 5 HOH H 64 364 109 HOH HOH . 
F 5 HOH H 65 365 110 HOH HOH . 
F 5 HOH H 66 366 112 HOH HOH . 
F 5 HOH H 67 367 113 HOH HOH . 
F 5 HOH H 68 368 116 HOH HOH . 
F 5 HOH H 69 369 117 HOH HOH . 
F 5 HOH H 70 370 119 HOH HOH . 
F 5 HOH H 71 371 121 HOH HOH . 
F 5 HOH H 72 372 122 HOH HOH . 
F 5 HOH H 73 373 123 HOH HOH . 
F 5 HOH H 74 374 124 HOH HOH . 
F 5 HOH H 75 375 126 HOH HOH . 
F 5 HOH H 76 376 128 HOH HOH . 
F 5 HOH H 77 377 129 HOH HOH . 
F 5 HOH H 78 378 131 HOH HOH . 
F 5 HOH H 79 379 138 HOH HOH . 
F 5 HOH H 80 380 139 HOH HOH . 
F 5 HOH H 81 381 141 HOH HOH . 
F 5 HOH H 82 382 142 HOH HOH . 
F 5 HOH H 83 383 143 HOH HOH . 
F 5 HOH H 84 384 144 HOH HOH . 
F 5 HOH H 85 385 151 HOH HOH . 
F 5 HOH H 86 386 152 HOH HOH . 
F 5 HOH H 87 387 155 HOH HOH . 
F 5 HOH H 88 388 157 HOH HOH . 
F 5 HOH H 89 389 166 HOH HOH . 
F 5 HOH H 90 390 167 HOH HOH . 
F 5 HOH H 91 391 168 HOH HOH . 
F 5 HOH H 92 392 169 HOH HOH . 
F 5 HOH H 93 393 180 HOH HOH . 
F 5 HOH H 94 394 181 HOH HOH . 
F 5 HOH H 95 395 182 HOH HOH . 
F 5 HOH H 96 396 183 HOH HOH . 
F 5 HOH H 97 397 184 HOH HOH . 
F 5 HOH H 98 398 185 HOH HOH . 
F 5 HOH H 99 399 186 HOH HOH . 
G 5 HOH L 1 401 4 HOH HOH . 
G 5 HOH L 2 402 12 HOH HOH . 
G 5 HOH L 3 403 22 HOH HOH . 
G 5 HOH L 4 404 23 HOH HOH . 
G 5 HOH L 5 405 32 HOH HOH . 
G 5 HOH L 6 406 36 HOH HOH . 
G 5 HOH L 7 407 37 HOH HOH . 
G 5 HOH L 8 408 39 HOH HOH . 
G 5 HOH L 9 409 41 HOH HOH . 
G 5 HOH L 10 410 43 HOH HOH . 
G 5 HOH L 11 411 49 HOH HOH . 
G 5 HOH L 12 412 54 HOH HOH . 
G 5 HOH L 13 413 56 HOH HOH . 
G 5 HOH L 14 414 58 HOH HOH . 
G 5 HOH L 15 415 59 HOH HOH . 
G 5 HOH L 16 416 77 HOH HOH . 
G 5 HOH L 17 417 79 HOH HOH . 
G 5 HOH L 18 418 81 HOH HOH . 
G 5 HOH L 19 419 83 HOH HOH . 
G 5 HOH L 20 420 85 HOH HOH . 
G 5 HOH L 21 421 88 HOH HOH . 
G 5 HOH L 22 422 97 HOH HOH . 
G 5 HOH L 23 423 106 HOH HOH . 
G 5 HOH L 24 424 111 HOH HOH . 
G 5 HOH L 25 425 115 HOH HOH . 
G 5 HOH L 26 426 125 HOH HOH . 
G 5 HOH L 27 427 127 HOH HOH . 
G 5 HOH L 28 428 130 HOH HOH . 
G 5 HOH L 29 429 132 HOH HOH . 
G 5 HOH L 30 430 134 HOH HOH . 
G 5 HOH L 31 431 140 HOH HOH . 
G 5 HOH L 32 432 146 HOH HOH . 
G 5 HOH L 33 433 147 HOH HOH . 
G 5 HOH L 34 434 148 HOH HOH . 
G 5 HOH L 35 435 149 HOH HOH . 
G 5 HOH L 36 436 150 HOH HOH . 
G 5 HOH L 37 437 153 HOH HOH . 
G 5 HOH L 38 438 156 HOH HOH . 
G 5 HOH L 39 439 158 HOH HOH . 
G 5 HOH L 40 440 159 HOH HOH . 
G 5 HOH L 41 441 160 HOH HOH . 
G 5 HOH L 42 442 170 HOH HOH . 
G 5 HOH L 43 443 171 HOH HOH . 
G 5 HOH L 44 444 172 HOH HOH . 
G 5 HOH L 45 445 174 HOH HOH . 
G 5 HOH L 46 446 175 HOH HOH . 
G 5 HOH L 47 447 176 HOH HOH . 
G 5 HOH L 48 448 177 HOH HOH . 
G 5 HOH L 49 449 178 HOH HOH . 
G 5 HOH L 50 450 179 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               32.6 
_atom_site.Cartn_y               -11.897 
_atom_site.Cartn_z               -19.349 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.05 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           300 
_atom_site.auth_asym_id          L 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#