data_4DGM # _model_server_result.job_id vRwW7S2gau_jR3c3HtkdSg _model_server_result.datetime_utc '2024-11-24 13:55:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 4DGM # _exptl.entry_id 4DGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.4 _cell.angle_gamma 90 _cell.entry_id 4DGM _cell.length_a 142.363 _cell.length_b 59.875 _cell.length_c 45.931 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id AGI _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Apigenin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAE AGI doub 1 n y CAG CAP AGI sing 2 n y CAE CAM AGI sing 3 n y CAM OAB AGI sing 4 n n CAM CAF AGI doub 5 n y CAF CAH AGI sing 6 n y CAH CAP AGI doub 7 n y CAP CAQ AGI sing 8 n n CAQ OAL AGI sing 9 n n CAQ CAJ AGI doub 10 n n OAL CAS AGI sing 11 n n CAJ CAR AGI sing 12 n n CAR OAA AGI doub 13 n n CAR CAT AGI sing 14 n n CAT CAS AGI doub 15 n y CAT CAO AGI sing 16 n y CAS CAK AGI sing 17 n y CAK CAN AGI doub 18 n y CAN OAC AGI sing 19 n n CAN CAI AGI sing 20 n y CAI CAO AGI doub 21 n y CAO OAD AGI sing 22 n n CAG HAG AGI sing 23 n n CAE HAE AGI sing 24 n n OAB HOAB AGI sing 25 n n CAF HAF AGI sing 26 n n CAH HAH AGI sing 27 n n CAJ HAJ AGI sing 28 n n CAK HAK AGI sing 29 n n OAC HOAC AGI sing 30 n n CAI HAI AGI sing 31 n n OAD HOAD AGI sing 32 n n # _atom_sites.entry_id 4DGM _atom_sites.fract_transf_matrix[1][1] 0.007024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EG . C 2 EDO A 1 402 1 EDO EG . D 2 EDO A 1 403 1 EDO EG . E 2 EDO A 1 404 1 EDO EG . F 3 PEG A 1 405 1 PEG PEG . G 4 AGI A 1 406 1 AGI ANN . H 5 HOH A 1 501 1 HOH HOH . H 5 HOH A 2 502 2 HOH HOH . H 5 HOH A 3 503 3 HOH HOH . H 5 HOH A 4 504 4 HOH HOH . H 5 HOH A 5 505 5 HOH HOH . H 5 HOH A 6 506 6 HOH HOH . H 5 HOH A 7 507 7 HOH HOH . H 5 HOH A 8 508 8 HOH HOH . H 5 HOH A 9 509 9 HOH HOH . H 5 HOH A 10 510 10 HOH HOH . H 5 HOH A 11 511 11 HOH HOH . H 5 HOH A 12 512 12 HOH HOH . H 5 HOH A 13 513 13 HOH HOH . H 5 HOH A 14 514 14 HOH HOH . H 5 HOH A 15 515 15 HOH HOH . H 5 HOH A 16 516 16 HOH HOH . H 5 HOH A 17 517 17 HOH HOH . H 5 HOH A 18 518 18 HOH HOH . H 5 HOH A 19 519 19 HOH HOH . H 5 HOH A 20 520 20 HOH HOH . H 5 HOH A 21 521 21 HOH HOH . H 5 HOH A 22 522 22 HOH HOH . H 5 HOH A 23 523 23 HOH HOH . H 5 HOH A 24 524 24 HOH HOH . H 5 HOH A 25 525 25 HOH HOH . H 5 HOH A 26 526 26 HOH HOH . H 5 HOH A 27 527 27 HOH HOH . H 5 HOH A 28 528 28 HOH HOH . H 5 HOH A 29 529 29 HOH HOH . H 5 HOH A 30 530 30 HOH HOH . H 5 HOH A 31 531 31 HOH HOH . H 5 HOH A 32 532 32 HOH HOH . H 5 HOH A 33 533 33 HOH HOH . H 5 HOH A 34 534 34 HOH HOH . H 5 HOH A 35 535 35 HOH HOH . H 5 HOH A 36 536 36 HOH HOH . H 5 HOH A 37 537 37 HOH HOH . H 5 HOH A 38 538 38 HOH HOH . H 5 HOH A 39 539 39 HOH HOH . H 5 HOH A 40 540 40 HOH HOH . H 5 HOH A 41 541 41 HOH HOH . H 5 HOH A 42 542 42 HOH HOH . H 5 HOH A 43 543 43 HOH HOH . H 5 HOH A 44 544 44 HOH HOH . H 5 HOH A 45 545 45 HOH HOH . H 5 HOH A 46 546 46 HOH HOH . H 5 HOH A 47 547 47 HOH HOH . H 5 HOH A 48 548 48 HOH HOH . H 5 HOH A 49 549 49 HOH HOH . H 5 HOH A 50 550 50 HOH HOH . H 5 HOH A 51 551 51 HOH HOH . H 5 HOH A 52 552 52 HOH HOH . H 5 HOH A 53 553 53 HOH HOH . H 5 HOH A 54 554 54 HOH HOH . H 5 HOH A 55 555 55 HOH HOH . H 5 HOH A 56 556 56 HOH HOH . H 5 HOH A 57 557 57 HOH HOH . H 5 HOH A 58 558 58 HOH HOH . H 5 HOH A 59 559 59 HOH HOH . H 5 HOH A 60 560 60 HOH HOH . H 5 HOH A 61 561 61 HOH HOH . H 5 HOH A 62 562 62 HOH HOH . H 5 HOH A 63 563 63 HOH HOH . H 5 HOH A 64 564 64 HOH HOH . H 5 HOH A 65 565 65 HOH HOH . H 5 HOH A 66 566 66 HOH HOH . H 5 HOH A 67 567 67 HOH HOH . H 5 HOH A 68 568 68 HOH HOH . H 5 HOH A 69 569 69 HOH HOH . H 5 HOH A 70 570 70 HOH HOH . H 5 HOH A 71 571 71 HOH HOH . H 5 HOH A 72 572 72 HOH HOH . H 5 HOH A 73 573 73 HOH HOH . H 5 HOH A 74 574 74 HOH HOH . H 5 HOH A 75 575 75 HOH HOH . H 5 HOH A 76 576 76 HOH HOH . H 5 HOH A 77 577 77 HOH HOH . H 5 HOH A 78 578 78 HOH HOH . H 5 HOH A 79 579 79 HOH HOH . H 5 HOH A 80 580 80 HOH HOH . H 5 HOH A 81 581 81 HOH HOH . H 5 HOH A 82 582 82 HOH HOH . H 5 HOH A 83 583 83 HOH HOH . H 5 HOH A 84 584 84 HOH HOH . H 5 HOH A 85 585 85 HOH HOH . H 5 HOH A 86 586 86 HOH HOH . H 5 HOH A 87 587 87 HOH HOH . H 5 HOH A 88 588 88 HOH HOH . H 5 HOH A 89 589 89 HOH HOH . H 5 HOH A 90 590 90 HOH HOH . H 5 HOH A 91 591 91 HOH HOH . H 5 HOH A 92 592 92 HOH HOH . H 5 HOH A 93 593 93 HOH HOH . H 5 HOH A 94 594 94 HOH HOH . H 5 HOH A 95 595 95 HOH HOH . H 5 HOH A 96 596 96 HOH HOH . H 5 HOH A 97 597 97 HOH HOH . H 5 HOH A 98 598 98 HOH HOH . H 5 HOH A 99 599 99 HOH HOH . H 5 HOH A 100 600 100 HOH HOH . H 5 HOH A 101 601 101 HOH HOH . H 5 HOH A 102 602 102 HOH HOH . H 5 HOH A 103 603 103 HOH HOH . H 5 HOH A 104 604 104 HOH HOH . H 5 HOH A 105 605 105 HOH HOH . H 5 HOH A 106 606 106 HOH HOH . H 5 HOH A 107 607 107 HOH HOH . H 5 HOH A 108 608 108 HOH HOH . H 5 HOH A 109 609 109 HOH HOH . H 5 HOH A 110 610 110 HOH HOH . H 5 HOH A 111 611 111 HOH HOH . H 5 HOH A 112 612 112 HOH HOH . H 5 HOH A 113 613 113 HOH HOH . H 5 HOH A 114 614 114 HOH HOH . H 5 HOH A 115 615 115 HOH HOH . H 5 HOH A 116 616 116 HOH HOH . H 5 HOH A 117 617 117 HOH HOH . H 5 HOH A 118 618 118 HOH HOH . H 5 HOH A 119 619 119 HOH HOH . H 5 HOH A 120 620 120 HOH HOH . H 5 HOH A 121 621 121 HOH HOH . H 5 HOH A 122 622 123 HOH HOH . H 5 HOH A 123 623 124 HOH HOH . H 5 HOH A 124 624 125 HOH HOH . H 5 HOH A 125 625 126 HOH HOH . H 5 HOH A 126 626 127 HOH HOH . H 5 HOH A 127 627 128 HOH HOH . H 5 HOH A 128 628 129 HOH HOH . H 5 HOH A 129 629 130 HOH HOH . H 5 HOH A 130 630 132 HOH HOH . H 5 HOH A 131 631 133 HOH HOH . H 5 HOH A 132 632 134 HOH HOH . H 5 HOH A 133 633 136 HOH HOH . H 5 HOH A 134 634 137 HOH HOH . H 5 HOH A 135 635 138 HOH HOH . H 5 HOH A 136 636 139 HOH HOH . H 5 HOH A 137 637 140 HOH HOH . H 5 HOH A 138 638 141 HOH HOH . H 5 HOH A 139 639 142 HOH HOH . H 5 HOH A 140 640 143 HOH HOH . H 5 HOH A 141 641 144 HOH HOH . H 5 HOH A 142 642 145 HOH HOH . H 5 HOH A 143 643 146 HOH HOH . H 5 HOH A 144 644 147 HOH HOH . H 5 HOH A 145 645 148 HOH HOH . H 5 HOH A 146 646 149 HOH HOH . H 5 HOH A 147 647 150 HOH HOH . H 5 HOH A 148 648 151 HOH HOH . H 5 HOH A 149 649 152 HOH HOH . H 5 HOH A 150 650 154 HOH HOH . H 5 HOH A 151 651 155 HOH HOH . H 5 HOH A 152 652 156 HOH HOH . H 5 HOH A 153 653 157 HOH HOH . H 5 HOH A 154 654 158 HOH HOH . H 5 HOH A 155 655 159 HOH HOH . H 5 HOH A 156 656 160 HOH HOH . H 5 HOH A 157 657 161 HOH HOH . H 5 HOH A 158 658 162 HOH HOH . H 5 HOH A 159 659 163 HOH HOH . H 5 HOH A 160 660 164 HOH HOH . H 5 HOH A 161 661 165 HOH HOH . H 5 HOH A 162 662 166 HOH HOH . H 5 HOH A 163 663 167 HOH HOH . H 5 HOH A 164 664 168 HOH HOH . H 5 HOH A 165 665 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAG AGI . . . G 4 22.435 8.747 16.225 1 27.43 ? CAG AGI 406 A 1 HETATM 2 C CAE AGI . . . G 4 23.009 8.475 14.989 1 27.04 ? CAE AGI 406 A 1 HETATM 3 C CAM AGI . . . G 4 23.83 7.358 14.857 1 23.45 ? CAM AGI 406 A 1 HETATM 4 O OAB AGI . . . G 4 24.354 7.143 13.644 1 24.18 ? OAB AGI 406 A 1 HETATM 5 C CAF AGI . . . G 4 24.156 6.531 15.942 1 26.64 ? CAF AGI 406 A 1 HETATM 6 C CAH AGI . . . G 4 23.585 6.799 17.176 1 27.24 ? CAH AGI 406 A 1 HETATM 7 C CAP AGI . . . G 4 22.754 7.917 17.285 1 26.85 ? CAP AGI 406 A 1 HETATM 8 C CAQ AGI . . . G 4 22.097 8.141 18.579 1 27.17 ? CAQ AGI 406 A 1 HETATM 9 O OAL AGI . . . G 4 22.305 7.149 19.464 1 28.41 ? OAL AGI 406 A 1 HETATM 10 C CAJ AGI . . . G 4 21.196 9.187 18.809 1 26.87 ? CAJ AGI 406 A 1 HETATM 11 C CAR AGI . . . G 4 20.566 9.234 20.044 1 29.07 ? CAR AGI 406 A 1 HETATM 12 O OAA AGI . . . G 4 19.805 10.18 20.315 1 31.8 ? OAA AGI 406 A 1 HETATM 13 C CAT AGI . . . G 4 20.862 8.176 21.056 1 29.35 ? CAT AGI 406 A 1 HETATM 14 C CAS AGI . . . G 4 21.716 7.153 20.694 1 27.21 ? CAS AGI 406 A 1 HETATM 15 C CAK AGI . . . G 4 21.998 6.103 21.573 1 30.21 ? CAK AGI 406 A 1 HETATM 16 C CAN AGI . . . G 4 21.415 6.086 22.833 1 31.67 ? CAN AGI 406 A 1 HETATM 17 O OAC AGI . . . G 4 21.679 5.073 23.716 1 36.1 ? OAC AGI 406 A 1 HETATM 18 C CAI AGI . . . G 4 20.555 7.098 23.198 1 31.52 ? CAI AGI 406 A 1 HETATM 19 C CAO AGI . . . G 4 20.279 8.136 22.326 1 29.96 ? CAO AGI 406 A 1 HETATM 20 O OAD AGI . . . G 4 19.435 9.087 22.771 1 35.76 ? OAD AGI 406 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #