data_4DGN # _model_server_result.job_id AX4QpmKjsgCECIxs0qiWyA _model_server_result.datetime_utc '2024-11-19 07:38:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4DGN # _exptl.entry_id 4DGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.47 _cell.angle_gamma 90 _cell.entry_id 4DGN _cell.length_a 142.863 _cell.length_b 59.366 _cell.length_c 45.485 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 82 A LEU 88 1_555 A N CSO 83 A CSO 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CSO 83 A CSO 89 1_555 A N GLY 84 A GLY 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id LU2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Luteolin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LU2 doub 208 n y C1 C6 LU2 sing 209 n y C1 H1 LU2 sing 210 n n O1 C2 LU2 sing 211 n n O1 HO1 LU2 sing 212 n n C2 C3 LU2 sing 213 n y C4 O2 LU2 sing 214 n n O2 HO2 LU2 sing 215 n n C3 C4 LU2 doub 216 n y C3 H3 LU2 sing 217 n n C7 O3 LU2 doub 218 n n C5 C4 LU2 sing 219 n y O4 C6 LU2 sing 220 n n O4 C9 LU2 sing 221 n n C6 C5 LU2 doub 222 n y C5 C7 LU2 sing 223 n n C12 O5 LU2 sing 224 n n O5 HO5 LU2 sing 225 n n O6 C13 LU2 sing 226 n n O6 HO6 LU2 sing 227 n n C8 C7 LU2 sing 228 n n C9 C8 LU2 doub 229 n n C8 H8 LU2 sing 230 n n C10 C9 LU2 sing 231 n n C15 C10 LU2 doub 232 n y C10 C11 LU2 sing 233 n y C12 C11 LU2 doub 234 n y C11 H11 LU2 sing 235 n n C13 C12 LU2 sing 236 n y C14 C13 LU2 doub 237 n y C14 C15 LU2 sing 238 n y C14 H14 LU2 sing 239 n n C15 H15 LU2 sing 240 n n # _atom_sites.entry_id 4DGN _atom_sites.fract_transf_matrix[1][1] 0.007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001677 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LU2 A 1 401 1 LU2 LUT . C 3 HOH A 1 501 2 HOH HOH . C 3 HOH A 2 502 3 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 5 HOH HOH . C 3 HOH A 5 505 6 HOH HOH . C 3 HOH A 6 506 7 HOH HOH . C 3 HOH A 7 507 8 HOH HOH . C 3 HOH A 8 508 9 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 11 HOH HOH . C 3 HOH A 11 511 12 HOH HOH . C 3 HOH A 12 512 13 HOH HOH . C 3 HOH A 13 513 14 HOH HOH . C 3 HOH A 14 514 15 HOH HOH . C 3 HOH A 15 515 16 HOH HOH . C 3 HOH A 16 516 17 HOH HOH . C 3 HOH A 17 517 18 HOH HOH . C 3 HOH A 18 518 19 HOH HOH . C 3 HOH A 19 519 20 HOH HOH . C 3 HOH A 20 520 21 HOH HOH . C 3 HOH A 21 521 22 HOH HOH . C 3 HOH A 22 522 23 HOH HOH . C 3 HOH A 23 523 24 HOH HOH . C 3 HOH A 24 524 25 HOH HOH . C 3 HOH A 25 525 26 HOH HOH . C 3 HOH A 26 526 27 HOH HOH . C 3 HOH A 27 527 28 HOH HOH . C 3 HOH A 28 528 29 HOH HOH . C 3 HOH A 29 529 30 HOH HOH . C 3 HOH A 30 530 31 HOH HOH . C 3 HOH A 31 531 32 HOH HOH . C 3 HOH A 32 532 33 HOH HOH . C 3 HOH A 33 533 34 HOH HOH . C 3 HOH A 34 534 35 HOH HOH . C 3 HOH A 35 535 36 HOH HOH . C 3 HOH A 36 536 37 HOH HOH . C 3 HOH A 37 537 38 HOH HOH . C 3 HOH A 38 538 39 HOH HOH . C 3 HOH A 39 539 40 HOH HOH . C 3 HOH A 40 540 41 HOH HOH . C 3 HOH A 41 541 42 HOH HOH . C 3 HOH A 42 542 43 HOH HOH . C 3 HOH A 43 543 44 HOH HOH . C 3 HOH A 44 544 45 HOH HOH . C 3 HOH A 45 545 46 HOH HOH . C 3 HOH A 46 546 48 HOH HOH . C 3 HOH A 47 547 49 HOH HOH . C 3 HOH A 48 548 50 HOH HOH . C 3 HOH A 49 549 51 HOH HOH . C 3 HOH A 50 550 52 HOH HOH . C 3 HOH A 51 551 55 HOH HOH . C 3 HOH A 52 552 56 HOH HOH . C 3 HOH A 53 553 57 HOH HOH . C 3 HOH A 54 554 58 HOH HOH . C 3 HOH A 55 555 59 HOH HOH . C 3 HOH A 56 556 60 HOH HOH . C 3 HOH A 57 557 61 HOH HOH . C 3 HOH A 58 558 62 HOH HOH . C 3 HOH A 59 559 63 HOH HOH . C 3 HOH A 60 560 64 HOH HOH . C 3 HOH A 61 561 65 HOH HOH . C 3 HOH A 62 562 66 HOH HOH . C 3 HOH A 63 563 67 HOH HOH . C 3 HOH A 64 564 68 HOH HOH . C 3 HOH A 65 565 69 HOH HOH . C 3 HOH A 66 566 70 HOH HOH . C 3 HOH A 67 567 71 HOH HOH . C 3 HOH A 68 568 72 HOH HOH . C 3 HOH A 69 569 73 HOH HOH . C 3 HOH A 70 570 74 HOH HOH . C 3 HOH A 71 571 75 HOH HOH . C 3 HOH A 72 572 77 HOH HOH . C 3 HOH A 73 573 78 HOH HOH . C 3 HOH A 74 574 80 HOH HOH . C 3 HOH A 75 575 81 HOH HOH . C 3 HOH A 76 576 82 HOH HOH . C 3 HOH A 77 577 83 HOH HOH . C 3 HOH A 78 578 84 HOH HOH . C 3 HOH A 79 579 85 HOH HOH . C 3 HOH A 80 580 86 HOH HOH . C 3 HOH A 81 581 87 HOH HOH . C 3 HOH A 82 582 89 HOH HOH . C 3 HOH A 83 583 90 HOH HOH . C 3 HOH A 84 584 91 HOH HOH . C 3 HOH A 85 585 92 HOH HOH . C 3 HOH A 86 586 93 HOH HOH . C 3 HOH A 87 587 94 HOH HOH . C 3 HOH A 88 588 98 HOH HOH . C 3 HOH A 89 589 99 HOH HOH . C 3 HOH A 90 590 100 HOH HOH . C 3 HOH A 91 591 101 HOH HOH . C 3 HOH A 92 592 102 HOH HOH . C 3 HOH A 93 593 103 HOH HOH . C 3 HOH A 94 594 104 HOH HOH . C 3 HOH A 95 595 105 HOH HOH . C 3 HOH A 96 596 106 HOH HOH . C 3 HOH A 97 597 107 HOH HOH . C 3 HOH A 98 598 108 HOH HOH . C 3 HOH A 99 599 109 HOH HOH . C 3 HOH A 100 600 110 HOH HOH . C 3 HOH A 101 601 112 HOH HOH . C 3 HOH A 102 602 113 HOH HOH . C 3 HOH A 103 603 114 HOH HOH . C 3 HOH A 104 604 116 HOH HOH . C 3 HOH A 105 605 117 HOH HOH . C 3 HOH A 106 606 118 HOH HOH . C 3 HOH A 107 607 120 HOH HOH . C 3 HOH A 108 608 121 HOH HOH . C 3 HOH A 109 609 123 HOH HOH . C 3 HOH A 110 610 124 HOH HOH . C 3 HOH A 111 611 126 HOH HOH . C 3 HOH A 112 612 127 HOH HOH . C 3 HOH A 113 613 128 HOH HOH . C 3 HOH A 114 614 129 HOH HOH . C 3 HOH A 115 615 130 HOH HOH . C 3 HOH A 116 616 131 HOH HOH . C 3 HOH A 117 617 133 HOH HOH . C 3 HOH A 118 618 134 HOH HOH . C 3 HOH A 119 619 136 HOH HOH . C 3 HOH A 120 620 137 HOH HOH . C 3 HOH A 121 621 138 HOH HOH . C 3 HOH A 122 622 139 HOH HOH . C 3 HOH A 123 623 140 HOH HOH . C 3 HOH A 124 624 141 HOH HOH . C 3 HOH A 125 625 142 HOH HOH . C 3 HOH A 126 626 143 HOH HOH . C 3 HOH A 127 627 144 HOH HOH . C 3 HOH A 128 628 145 HOH HOH . C 3 HOH A 129 629 146 HOH HOH . C 3 HOH A 130 630 147 HOH HOH . C 3 HOH A 131 631 148 HOH HOH . C 3 HOH A 132 632 149 HOH HOH . C 3 HOH A 133 633 150 HOH HOH . C 3 HOH A 134 634 151 HOH HOH . C 3 HOH A 135 635 152 HOH HOH . C 3 HOH A 136 636 153 HOH HOH . C 3 HOH A 137 637 154 HOH HOH . C 3 HOH A 138 638 155 HOH HOH . C 3 HOH A 139 639 156 HOH HOH . C 3 HOH A 140 640 158 HOH HOH . C 3 HOH A 141 641 159 HOH HOH . C 3 HOH A 142 642 160 HOH HOH . C 3 HOH A 143 643 161 HOH HOH . C 3 HOH A 144 644 162 HOH HOH . C 3 HOH A 145 645 163 HOH HOH . C 3 HOH A 146 646 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LU2 . . . B 2 22.032 6.161 21.475 1 36.78 ? C1 LU2 401 A 1 HETATM 2 O O1 LU2 . . . B 2 21.74 5.157 23.637 1 38.22 ? O1 LU2 401 A 1 HETATM 3 C C2 LU2 . . . B 2 21.464 6.16 22.753 1 35.6 ? C2 LU2 401 A 1 HETATM 4 O O2 LU2 . . . B 2 19.452 9.148 22.659 1 37.65 ? O2 LU2 401 A 1 HETATM 5 C C3 LU2 . . . B 2 20.601 7.174 23.128 1 36.41 ? C3 LU2 401 A 1 HETATM 6 O O3 LU2 . . . B 2 19.735 10.223 20.279 1 36.86 ? O3 LU2 401 A 1 HETATM 7 C C4 LU2 . . . B 2 20.287 8.185 22.235 1 32.61 ? C4 LU2 401 A 1 HETATM 8 O O4 LU2 . . . B 2 22.271 7.215 19.328 1 30.06 ? O4 LU2 401 A 1 HETATM 9 C C5 LU2 . . . B 2 20.858 8.23 20.958 1 32.08 ? C5 LU2 401 A 1 HETATM 10 O O5 LU2 . . . B 2 24.846 5.467 15.842 1 34.53 ? O5 LU2 401 A 1 HETATM 11 C C6 LU2 . . . B 2 21.728 7.207 20.593 1 31.94 ? C6 LU2 401 A 1 HETATM 12 O O6 LU2 . . . B 2 24.384 7.187 13.679 1 29.41 ? O6 LU2 401 A 1 HETATM 13 C C7 LU2 . . . B 2 20.515 9.292 19.961 1 32.29 ? C7 LU2 401 A 1 HETATM 14 C C8 LU2 . . . B 2 21.109 9.273 18.694 1 29.67 ? C8 LU2 401 A 1 HETATM 15 C C9 LU2 . . . B 2 21.992 8.233 18.459 1 30.99 ? C9 LU2 401 A 1 HETATM 16 C C10 LU2 . . . B 2 22.649 8.001 17.201 1 27.86 ? C10 LU2 401 A 1 HETATM 17 C C11 LU2 . . . B 2 23.446 6.845 17.166 1 29.32 ? C11 LU2 401 A 1 HETATM 18 C C12 LU2 . . . B 2 24.051 6.564 15.947 1 28.66 ? C12 LU2 401 A 1 HETATM 19 C C13 LU2 . . . B 2 23.819 7.403 14.878 1 27.98 ? C13 LU2 401 A 1 HETATM 20 C C14 LU2 . . . B 2 23.026 8.539 14.943 1 31.02 ? C14 LU2 401 A 1 HETATM 21 C C15 LU2 . . . B 2 22.411 8.852 16.141 1 31.96 ? C15 LU2 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #