data_4DGU # _model_server_result.job_id SToSDp_VyVnxN2L8Ex9gVg _model_server_result.datetime_utc '2025-01-10 20:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4DGU # _exptl.entry_id 4DGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DGU _cell.length_a 83.549 _cell.length_b 127.51 _cell.length_c 110.729 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 166.0935 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 47 A SER 67 1_555 A N MSE 48 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 48 A MSE 68 1_555 A N ALA 49 A ALA 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C ARG 127 A ARG 147 1_555 A N MSE 128 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale4 A C MSE 128 A MSE 148 1_555 A N THR 129 A THR 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale5 B C SER 47 B SER 67 1_555 B N MSE 48 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 B C MSE 48 B MSE 68 1_555 B N ALA 49 B ALA 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 B C ARG 127 B ARG 147 1_555 B N MSE 128 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 B C MSE 128 B MSE 148 1_555 B N THR 129 B THR 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? metalc ? metalc1 A NE2 HIS 107 A HIS 127 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OE2 GLU 137 A GLU 157 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A OE2 GLU 155 A GLU 175 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 A OE1 GLU 155 A GLU 175 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc5 A OE2 GLU 174 A GLU 194 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc6 A OE2 GLU 199 A GLU 219 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc7 D ZN ZN . A ZN 302 1_555 M O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 M O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc9 E ZN ZN . A ZN 303 1_555 B OE2 GLU 199 B GLU 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc10 E ZN ZN . A ZN 303 1_555 N O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc11 F ZN ZN . A ZN 304 1_555 M O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc12 F ZN ZN . A ZN 304 1_555 B OE2 GLU 137 B GLU 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc13 B OD1 ASP 19 B ASP 39 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc14 B NE2 HIS 107 B HIS 127 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc15 B OD2 ASP 139 B ASP 159 1_555 J ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc16 H ZN ZN . B ZN 301 1_555 N O HOH . B HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc17 H ZN ZN . B ZN 301 1_555 N O HOH . B HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc18 K ZN ZN . B ZN 304 1_555 N O HOH . B HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc19 K ZN ZN . B ZN 304 1_555 N O HOH . B HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DGU _atom_sites.fract_transf_matrix[1][1] 0.011969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 268 ZN ZN . D 2 ZN A 1 302 269 ZN ZN . E 2 ZN A 1 303 272 ZN ZN . F 2 ZN A 1 304 273 ZN ZN . G 3 CL A 1 305 277 CL CL . H 2 ZN B 1 301 270 ZN ZN . I 2 ZN B 1 302 271 ZN ZN . J 2 ZN B 1 303 274 ZN ZN . K 2 ZN B 1 304 275 ZN ZN . L 2 ZN B 1 305 276 ZN ZN . M 4 HOH A 1 401 278 HOH HOH . M 4 HOH A 2 402 279 HOH HOH . M 4 HOH A 3 403 280 HOH HOH . M 4 HOH A 4 404 281 HOH HOH . M 4 HOH A 5 405 286 HOH HOH . M 4 HOH A 6 406 289 HOH HOH . M 4 HOH A 7 407 291 HOH HOH . M 4 HOH A 8 408 294 HOH HOH . M 4 HOH A 9 409 295 HOH HOH . M 4 HOH A 10 410 297 HOH HOH . M 4 HOH A 11 411 298 HOH HOH . M 4 HOH A 12 412 299 HOH HOH . M 4 HOH A 13 413 301 HOH HOH . M 4 HOH A 14 414 302 HOH HOH . M 4 HOH A 15 415 303 HOH HOH . M 4 HOH A 16 416 304 HOH HOH . M 4 HOH A 17 417 308 HOH HOH . M 4 HOH A 18 418 309 HOH HOH . M 4 HOH A 19 419 310 HOH HOH . M 4 HOH A 20 420 311 HOH HOH . M 4 HOH A 21 421 315 HOH HOH . M 4 HOH A 22 422 317 HOH HOH . M 4 HOH A 23 423 318 HOH HOH . M 4 HOH A 24 424 319 HOH HOH . M 4 HOH A 25 425 323 HOH HOH . M 4 HOH A 26 426 325 HOH HOH . M 4 HOH A 27 427 326 HOH HOH . M 4 HOH A 28 428 328 HOH HOH . M 4 HOH A 29 429 330 HOH HOH . M 4 HOH A 30 430 332 HOH HOH . M 4 HOH A 31 431 333 HOH HOH . M 4 HOH A 32 432 334 HOH HOH . M 4 HOH A 33 433 335 HOH HOH . M 4 HOH A 34 434 336 HOH HOH . M 4 HOH A 35 435 337 HOH HOH . M 4 HOH A 36 436 340 HOH HOH . M 4 HOH A 37 437 341 HOH HOH . M 4 HOH A 38 438 343 HOH HOH . M 4 HOH A 39 439 344 HOH HOH . M 4 HOH A 40 440 345 HOH HOH . M 4 HOH A 41 441 346 HOH HOH . M 4 HOH A 42 442 349 HOH HOH . M 4 HOH A 43 443 352 HOH HOH . M 4 HOH A 44 444 353 HOH HOH . M 4 HOH A 45 445 354 HOH HOH . M 4 HOH A 46 446 355 HOH HOH . M 4 HOH A 47 447 356 HOH HOH . M 4 HOH A 48 448 359 HOH HOH . M 4 HOH A 49 449 365 HOH HOH . M 4 HOH A 50 450 366 HOH HOH . M 4 HOH A 51 451 372 HOH HOH . M 4 HOH A 52 452 373 HOH HOH . M 4 HOH A 53 453 374 HOH HOH . M 4 HOH A 54 454 379 HOH HOH . M 4 HOH A 55 455 380 HOH HOH . M 4 HOH A 56 456 381 HOH HOH . M 4 HOH A 57 457 383 HOH HOH . M 4 HOH A 58 458 384 HOH HOH . M 4 HOH A 59 459 385 HOH HOH . M 4 HOH A 60 460 386 HOH HOH . M 4 HOH A 61 461 387 HOH HOH . M 4 HOH A 62 462 389 HOH HOH . M 4 HOH A 63 463 390 HOH HOH . M 4 HOH A 64 464 393 HOH HOH . M 4 HOH A 65 465 394 HOH HOH . M 4 HOH A 66 466 395 HOH HOH . M 4 HOH A 67 467 396 HOH HOH . M 4 HOH A 68 468 397 HOH HOH . M 4 HOH A 69 469 401 HOH HOH . M 4 HOH A 70 470 403 HOH HOH . M 4 HOH A 71 471 404 HOH HOH . M 4 HOH A 72 472 405 HOH HOH . M 4 HOH A 73 473 406 HOH HOH . M 4 HOH A 74 474 408 HOH HOH . M 4 HOH A 75 475 409 HOH HOH . M 4 HOH A 76 476 410 HOH HOH . M 4 HOH A 77 477 414 HOH HOH . M 4 HOH A 78 478 416 HOH HOH . M 4 HOH A 79 479 417 HOH HOH . M 4 HOH A 80 480 418 HOH HOH . M 4 HOH A 81 481 421 HOH HOH . M 4 HOH A 82 482 422 HOH HOH . M 4 HOH A 83 483 427 HOH HOH . M 4 HOH A 84 484 429 HOH HOH . M 4 HOH A 85 485 431 HOH HOH . M 4 HOH A 86 486 433 HOH HOH . M 4 HOH A 87 487 434 HOH HOH . M 4 HOH A 88 488 436 HOH HOH . M 4 HOH A 89 489 438 HOH HOH . M 4 HOH A 90 490 439 HOH HOH . M 4 HOH A 91 491 440 HOH HOH . M 4 HOH A 92 492 444 HOH HOH . M 4 HOH A 93 493 446 HOH HOH . M 4 HOH A 94 494 449 HOH HOH . M 4 HOH A 95 495 451 HOH HOH . M 4 HOH A 96 496 453 HOH HOH . M 4 HOH A 97 497 454 HOH HOH . M 4 HOH A 98 498 456 HOH HOH . M 4 HOH A 99 499 457 HOH HOH . M 4 HOH A 100 500 458 HOH HOH . M 4 HOH A 101 501 461 HOH HOH . M 4 HOH A 102 502 466 HOH HOH . M 4 HOH A 103 503 468 HOH HOH . M 4 HOH A 104 504 469 HOH HOH . M 4 HOH A 105 505 470 HOH HOH . M 4 HOH A 106 506 472 HOH HOH . N 4 HOH B 1 401 282 HOH HOH . N 4 HOH B 2 402 283 HOH HOH . N 4 HOH B 3 403 284 HOH HOH . N 4 HOH B 4 404 285 HOH HOH . N 4 HOH B 5 405 287 HOH HOH . N 4 HOH B 6 406 288 HOH HOH . N 4 HOH B 7 407 290 HOH HOH . N 4 HOH B 8 408 292 HOH HOH . N 4 HOH B 9 409 293 HOH HOH . N 4 HOH B 10 410 296 HOH HOH . N 4 HOH B 11 411 300 HOH HOH . N 4 HOH B 12 412 305 HOH HOH . N 4 HOH B 13 413 306 HOH HOH . N 4 HOH B 14 414 307 HOH HOH . N 4 HOH B 15 415 312 HOH HOH . N 4 HOH B 16 416 313 HOH HOH . N 4 HOH B 17 417 314 HOH HOH . N 4 HOH B 18 418 316 HOH HOH . N 4 HOH B 19 419 320 HOH HOH . N 4 HOH B 20 420 321 HOH HOH . N 4 HOH B 21 421 322 HOH HOH . N 4 HOH B 22 422 324 HOH HOH . N 4 HOH B 23 423 327 HOH HOH . N 4 HOH B 24 424 329 HOH HOH . N 4 HOH B 25 425 331 HOH HOH . N 4 HOH B 26 426 338 HOH HOH . N 4 HOH B 27 427 339 HOH HOH . N 4 HOH B 28 428 342 HOH HOH . N 4 HOH B 29 429 347 HOH HOH . N 4 HOH B 30 430 348 HOH HOH . N 4 HOH B 31 431 350 HOH HOH . N 4 HOH B 32 432 351 HOH HOH . N 4 HOH B 33 433 357 HOH HOH . N 4 HOH B 34 434 358 HOH HOH . N 4 HOH B 35 435 360 HOH HOH . N 4 HOH B 36 436 361 HOH HOH . N 4 HOH B 37 437 362 HOH HOH . N 4 HOH B 38 438 363 HOH HOH . N 4 HOH B 39 439 364 HOH HOH . N 4 HOH B 40 440 367 HOH HOH . N 4 HOH B 41 441 368 HOH HOH . N 4 HOH B 42 442 369 HOH HOH . N 4 HOH B 43 443 370 HOH HOH . N 4 HOH B 44 444 371 HOH HOH . N 4 HOH B 45 445 375 HOH HOH . N 4 HOH B 46 446 376 HOH HOH . N 4 HOH B 47 447 377 HOH HOH . N 4 HOH B 48 448 378 HOH HOH . N 4 HOH B 49 449 382 HOH HOH . N 4 HOH B 50 450 388 HOH HOH . N 4 HOH B 51 451 391 HOH HOH . N 4 HOH B 52 452 392 HOH HOH . N 4 HOH B 53 453 398 HOH HOH . N 4 HOH B 54 454 399 HOH HOH . N 4 HOH B 55 455 400 HOH HOH . N 4 HOH B 56 456 402 HOH HOH . N 4 HOH B 57 457 407 HOH HOH . N 4 HOH B 58 458 411 HOH HOH . N 4 HOH B 59 459 412 HOH HOH . N 4 HOH B 60 460 413 HOH HOH . N 4 HOH B 61 461 415 HOH HOH . N 4 HOH B 62 462 419 HOH HOH . N 4 HOH B 63 463 420 HOH HOH . N 4 HOH B 64 464 423 HOH HOH . N 4 HOH B 65 465 424 HOH HOH . N 4 HOH B 66 466 425 HOH HOH . N 4 HOH B 67 467 426 HOH HOH . N 4 HOH B 68 468 428 HOH HOH . N 4 HOH B 69 469 430 HOH HOH . N 4 HOH B 70 470 432 HOH HOH . N 4 HOH B 71 471 435 HOH HOH . N 4 HOH B 72 472 437 HOH HOH . N 4 HOH B 73 473 441 HOH HOH . N 4 HOH B 74 474 442 HOH HOH . N 4 HOH B 75 475 443 HOH HOH . N 4 HOH B 76 476 445 HOH HOH . N 4 HOH B 77 477 447 HOH HOH . N 4 HOH B 78 478 448 HOH HOH . N 4 HOH B 79 479 450 HOH HOH . N 4 HOH B 80 480 452 HOH HOH . N 4 HOH B 81 481 455 HOH HOH . N 4 HOH B 82 482 459 HOH HOH . N 4 HOH B 83 483 460 HOH HOH . N 4 HOH B 84 484 462 HOH HOH . N 4 HOH B 85 485 463 HOH HOH . N 4 HOH B 86 486 464 HOH HOH . N 4 HOH B 87 487 465 HOH HOH . N 4 HOH B 88 488 467 HOH HOH . N 4 HOH B 89 489 471 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.918 _atom_site.Cartn_y -13.845 _atom_site.Cartn_z 92.31 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #