data_4DH5
#
_model_server_result.job_id            RYjnuGh0RzXXINppod5DEQ 
_model_server_result.datetime_utc      '2024-10-13 10:25:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4DH5 
#
_exptl.entry_id    4DH5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DH5 
_cell.length_a            58.9 
_cell.length_b            79.63 
_cell.length_c            99.49 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 138 A PHE 138 1_555 A N SEP 139 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C SEP 139 A SEP 139 1_555 A N GLU 140 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 D MG MG . A MG 402 1_555 F O4 PO4 . A PO4 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc2 C MG MG . A MG 401 1_555 F O3 PO4 . A PO4 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc3 C MG MG . A MG 401 1_555 E O1B ADP . A ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc4 A OD2 ASP 184 A ASP 184 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc5 D MG MG . A MG 402 1_555 E O3B ADP . A ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc6 A OD1 ASN 171 A ASN 171 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc7 D MG MG . A MG 402 1_555 E O2A ADP . A ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc8 A OD2 ASP 184 A ASP 184 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc9 A OD1 ASP 184 A ASP 184 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc10 C MG MG . A MG 401 1_555 G O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc11 D MG MG . A MG 402 1_555 G O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc12 C MG MG . A MG 401 1_555 G O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4DH5 
_atom_sites.fract_transf_matrix[1][1]    0.016978 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 401 351 MG MG . 
D 3 MG A 1 402 352 MG MG . 
E 4 ADP A 1 403 353 ADP ADP . 
F 5 PO4 A 1 404 354 PO4 PO4 . 
G 6 HOH A 1 1001 1001 HOH HOH . 
G 6 HOH A 2 1002 1002 HOH HOH . 
G 6 HOH A 3 1003 1003 HOH HOH . 
G 6 HOH A 4 1004 1004 HOH HOH . 
G 6 HOH A 5 1005 1005 HOH HOH . 
G 6 HOH A 6 1006 1006 HOH HOH . 
G 6 HOH A 7 1007 1007 HOH HOH . 
G 6 HOH A 8 1008 1008 HOH HOH . 
G 6 HOH A 9 1009 1010 HOH HOH . 
G 6 HOH A 10 1010 1011 HOH HOH . 
G 6 HOH A 11 1011 1013 HOH HOH . 
G 6 HOH A 12 1012 1014 HOH HOH . 
G 6 HOH A 13 1013 1015 HOH HOH . 
G 6 HOH A 14 1014 1016 HOH HOH . 
G 6 HOH A 15 1015 1017 HOH HOH . 
G 6 HOH A 16 1016 1018 HOH HOH . 
G 6 HOH A 17 1017 1019 HOH HOH . 
G 6 HOH A 18 1018 1020 HOH HOH . 
G 6 HOH A 19 1019 1021 HOH HOH . 
G 6 HOH A 20 1020 1022 HOH HOH . 
G 6 HOH A 21 1021 1023 HOH HOH . 
G 6 HOH A 22 1022 1025 HOH HOH . 
G 6 HOH A 23 1023 1026 HOH HOH . 
G 6 HOH A 24 1024 1027 HOH HOH . 
G 6 HOH A 25 1025 1028 HOH HOH . 
G 6 HOH A 26 1026 1029 HOH HOH . 
G 6 HOH A 27 1027 1030 HOH HOH . 
G 6 HOH A 28 1028 1031 HOH HOH . 
G 6 HOH A 29 1029 1032 HOH HOH . 
G 6 HOH A 30 1030 1033 HOH HOH . 
G 6 HOH A 31 1031 1034 HOH HOH . 
G 6 HOH A 32 1032 1035 HOH HOH . 
G 6 HOH A 33 1033 1036 HOH HOH . 
G 6 HOH A 34 1034 1037 HOH HOH . 
G 6 HOH A 35 1035 1038 HOH HOH . 
G 6 HOH A 36 1036 1039 HOH HOH . 
G 6 HOH A 37 1037 1040 HOH HOH . 
G 6 HOH A 38 1038 1041 HOH HOH . 
G 6 HOH A 39 1039 1042 HOH HOH . 
G 6 HOH A 40 1040 1043 HOH HOH . 
G 6 HOH A 41 1041 1044 HOH HOH . 
G 6 HOH A 42 1042 1045 HOH HOH . 
G 6 HOH A 43 1043 1047 HOH HOH . 
G 6 HOH A 44 1044 1049 HOH HOH . 
G 6 HOH A 45 1045 1050 HOH HOH . 
G 6 HOH A 46 1046 1051 HOH HOH . 
G 6 HOH A 47 1047 1052 HOH HOH . 
G 6 HOH A 48 1048 1054 HOH HOH . 
G 6 HOH A 49 1049 1055 HOH HOH . 
G 6 HOH A 50 1050 1056 HOH HOH . 
G 6 HOH A 51 1051 1057 HOH HOH . 
G 6 HOH A 52 1052 1058 HOH HOH . 
G 6 HOH A 53 1053 1059 HOH HOH . 
G 6 HOH A 54 1054 1060 HOH HOH . 
G 6 HOH A 55 1055 1062 HOH HOH . 
G 6 HOH A 56 1056 1063 HOH HOH . 
G 6 HOH A 57 1057 1064 HOH HOH . 
G 6 HOH A 58 1058 1065 HOH HOH . 
G 6 HOH A 59 1059 1067 HOH HOH . 
G 6 HOH A 60 1060 1068 HOH HOH . 
G 6 HOH A 61 1061 1069 HOH HOH . 
G 6 HOH A 62 1062 1071 HOH HOH . 
G 6 HOH A 63 1063 1072 HOH HOH . 
G 6 HOH A 64 1064 1073 HOH HOH . 
G 6 HOH A 65 1065 1075 HOH HOH . 
G 6 HOH A 66 1066 1076 HOH HOH . 
G 6 HOH A 67 1067 1077 HOH HOH . 
G 6 HOH A 68 1068 1078 HOH HOH . 
G 6 HOH A 69 1069 1079 HOH HOH . 
G 6 HOH A 70 1070 1080 HOH HOH . 
G 6 HOH A 71 1071 1081 HOH HOH . 
G 6 HOH A 72 1072 1082 HOH HOH . 
G 6 HOH A 73 1073 1083 HOH HOH . 
G 6 HOH A 74 1074 1084 HOH HOH . 
G 6 HOH A 75 1075 1085 HOH HOH . 
G 6 HOH A 76 1076 1086 HOH HOH . 
G 6 HOH A 77 1077 1087 HOH HOH . 
G 6 HOH A 78 1078 1088 HOH HOH . 
G 6 HOH A 79 1079 1089 HOH HOH . 
G 6 HOH A 80 1080 1090 HOH HOH . 
G 6 HOH A 81 1081 1091 HOH HOH . 
G 6 HOH A 82 1082 1093 HOH HOH . 
G 6 HOH A 83 1083 1094 HOH HOH . 
G 6 HOH A 84 1084 1095 HOH HOH . 
G 6 HOH A 85 1085 1096 HOH HOH . 
G 6 HOH A 86 1086 1097 HOH HOH . 
G 6 HOH A 87 1087 1098 HOH HOH . 
G 6 HOH A 88 1088 1099 HOH HOH . 
G 6 HOH A 89 1089 1100 HOH HOH . 
G 6 HOH A 90 1090 1101 HOH HOH . 
G 6 HOH A 91 1091 1104 HOH HOH . 
G 6 HOH A 92 1092 1106 HOH HOH . 
G 6 HOH A 93 1093 1107 HOH HOH . 
G 6 HOH A 94 1094 1108 HOH HOH . 
G 6 HOH A 95 1095 1109 HOH HOH . 
G 6 HOH A 96 1096 1110 HOH HOH . 
G 6 HOH A 97 1097 1111 HOH HOH . 
G 6 HOH A 98 1098 1112 HOH HOH . 
G 6 HOH A 99 1099 1113 HOH HOH . 
G 6 HOH A 100 1100 1114 HOH HOH . 
G 6 HOH A 101 1101 1115 HOH HOH . 
G 6 HOH A 102 1102 1116 HOH HOH . 
G 6 HOH A 103 1103 1117 HOH HOH . 
G 6 HOH A 104 1104 1118 HOH HOH . 
G 6 HOH A 105 1105 1119 HOH HOH . 
G 6 HOH A 106 1106 1120 HOH HOH . 
G 6 HOH A 107 1107 1121 HOH HOH . 
G 6 HOH A 108 1108 1123 HOH HOH . 
G 6 HOH A 109 1109 1124 HOH HOH . 
G 6 HOH A 110 1110 1125 HOH HOH . 
G 6 HOH A 111 1111 1126 HOH HOH . 
G 6 HOH A 112 1112 1127 HOH HOH . 
G 6 HOH A 113 1113 1128 HOH HOH . 
G 6 HOH A 114 1114 1132 HOH HOH . 
G 6 HOH A 115 1115 1133 HOH HOH . 
G 6 HOH A 116 1116 1134 HOH HOH . 
G 6 HOH A 117 1117 1135 HOH HOH . 
G 6 HOH A 118 1118 1136 HOH HOH . 
G 6 HOH A 119 1119 1137 HOH HOH . 
G 6 HOH A 120 1120 1138 HOH HOH . 
G 6 HOH A 121 1121 1139 HOH HOH . 
G 6 HOH A 122 1122 1140 HOH HOH . 
G 6 HOH A 123 1123 1141 HOH HOH . 
G 6 HOH A 124 1124 1142 HOH HOH . 
G 6 HOH A 125 1125 1143 HOH HOH . 
G 6 HOH A 126 1126 1144 HOH HOH . 
G 6 HOH A 127 1127 1145 HOH HOH . 
G 6 HOH A 128 1128 1146 HOH HOH . 
G 6 HOH A 129 1129 1147 HOH HOH . 
G 6 HOH A 130 1130 1148 HOH HOH . 
G 6 HOH A 131 1131 1149 HOH HOH . 
G 6 HOH A 132 1132 1150 HOH HOH . 
G 6 HOH A 133 1133 1152 HOH HOH . 
G 6 HOH A 134 1134 1153 HOH HOH . 
G 6 HOH A 135 1135 1154 HOH HOH . 
G 6 HOH A 136 1136 1156 HOH HOH . 
G 6 HOH A 137 1137 1157 HOH HOH . 
G 6 HOH A 138 1138 1158 HOH HOH . 
G 6 HOH A 139 1139 1161 HOH HOH . 
G 6 HOH A 140 1140 1163 HOH HOH . 
G 6 HOH A 141 1141 1164 HOH HOH . 
G 6 HOH A 142 1142 1165 HOH HOH . 
G 6 HOH A 143 1143 1166 HOH HOH . 
G 6 HOH A 144 1144 1167 HOH HOH . 
G 6 HOH A 145 1145 1168 HOH HOH . 
G 6 HOH A 146 1146 1169 HOH HOH . 
G 6 HOH A 147 1147 1171 HOH HOH . 
G 6 HOH A 148 1148 1172 HOH HOH . 
G 6 HOH A 149 1149 1173 HOH HOH . 
G 6 HOH A 150 1150 1174 HOH HOH . 
G 6 HOH A 151 1151 1175 HOH HOH . 
G 6 HOH A 152 1152 1176 HOH HOH . 
G 6 HOH A 153 1153 1177 HOH HOH . 
G 6 HOH A 154 1154 1178 HOH HOH . 
G 6 HOH A 155 1155 1179 HOH HOH . 
G 6 HOH A 156 1156 1180 HOH HOH . 
G 6 HOH A 157 1157 1182 HOH HOH . 
G 6 HOH A 158 1158 1183 HOH HOH . 
G 6 HOH A 159 1159 1184 HOH HOH . 
G 6 HOH A 160 1160 1185 HOH HOH . 
G 6 HOH A 161 1161 1187 HOH HOH . 
G 6 HOH A 162 1162 1188 HOH HOH . 
G 6 HOH A 163 1163 1189 HOH HOH . 
G 6 HOH A 164 1164 1190 HOH HOH . 
G 6 HOH A 165 1165 1192 HOH HOH . 
G 6 HOH A 166 1166 1193 HOH HOH . 
G 6 HOH A 167 1167 1194 HOH HOH . 
G 6 HOH A 168 1168 1195 HOH HOH . 
G 6 HOH A 169 1169 1196 HOH HOH . 
G 6 HOH A 170 1170 1198 HOH HOH . 
G 6 HOH A 171 1171 1200 HOH HOH . 
G 6 HOH A 172 1172 1201 HOH HOH . 
G 6 HOH A 173 1173 1202 HOH HOH . 
G 6 HOH A 174 1174 1203 HOH HOH . 
G 6 HOH A 175 1175 1204 HOH HOH . 
G 6 HOH A 176 1176 1205 HOH HOH . 
G 6 HOH A 177 1177 1206 HOH HOH . 
G 6 HOH A 178 1178 1207 HOH HOH . 
G 6 HOH A 179 1179 1208 HOH HOH . 
G 6 HOH A 180 1180 1210 HOH HOH . 
G 6 HOH A 181 1181 1211 HOH HOH . 
G 6 HOH A 182 1182 1212 HOH HOH . 
G 6 HOH A 183 1183 1213 HOH HOH . 
G 6 HOH A 184 1184 1214 HOH HOH . 
G 6 HOH A 185 1185 1215 HOH HOH . 
G 6 HOH A 186 1186 1217 HOH HOH . 
G 6 HOH A 187 1187 1218 HOH HOH . 
G 6 HOH A 188 1188 1219 HOH HOH . 
G 6 HOH A 189 1189 1220 HOH HOH . 
G 6 HOH A 190 1190 1221 HOH HOH . 
G 6 HOH A 191 1191 1222 HOH HOH . 
G 6 HOH A 192 1192 1223 HOH HOH . 
G 6 HOH A 193 1193 1227 HOH HOH . 
G 6 HOH A 194 1194 1228 HOH HOH . 
G 6 HOH A 195 1195 1229 HOH HOH . 
G 6 HOH A 196 1196 1231 HOH HOH . 
G 6 HOH A 197 1197 1232 HOH HOH . 
H 6 HOH I 1 101 1009 HOH HOH . 
H 6 HOH I 2 102 1046 HOH HOH . 
H 6 HOH I 3 103 1048 HOH HOH . 
H 6 HOH I 4 104 1053 HOH HOH . 
H 6 HOH I 5 105 1061 HOH HOH . 
H 6 HOH I 6 106 1070 HOH HOH . 
H 6 HOH I 7 107 1092 HOH HOH . 
H 6 HOH I 8 108 1102 HOH HOH . 
H 6 HOH I 9 109 1103 HOH HOH . 
H 6 HOH I 10 110 1105 HOH HOH . 
H 6 HOH I 11 111 1130 HOH HOH . 
H 6 HOH I 12 112 1162 HOH HOH . 
H 6 HOH I 13 113 1199 HOH HOH . 
H 6 HOH I 14 114 1226 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -3.645 
_atom_site.Cartn_y               10.318 
_atom_site.Cartn_z               -16.811 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           441 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#