data_4DH6
#
_model_server_result.job_id            VeY1oMVofINqXK-hpE1CPg 
_model_server_result.datetime_utc      '2024-10-20 00:25:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dh6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":410}' 
#
_entry.id    4DH6 
#
_exptl.entry_id    4DH6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4DH6 
_cell.length_a            103.694 
_cell.length_b            103.694 
_cell.length_c            168.866 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DH6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     4DH6 
_atom_sites.fract_transf_matrix[1][1]    0.009644 
_atom_sites.fract_transf_matrix[1][2]    0.005568 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 401 1 IOD IOD . 
C 2 IOD A 1 402 2 IOD IOD . 
D 2 IOD A 1 403 3 IOD IOD . 
E 2 IOD A 1 404 4 IOD IOD . 
F 2 IOD A 1 405 5 IOD IOD . 
G 2 IOD A 1 406 6 IOD IOD . 
H 2 IOD A 1 407 8 IOD IOD . 
I 2 IOD A 1 408 9 IOD IOD . 
J 3 GOL A 1 409 1 GOL GOL . 
K 3 GOL A 1 410 2 GOL GOL . 
L 4 0KN A 1 411 1 0KN 0KN . 
M 5 HOH A 1 501 1 HOH HOH . 
M 5 HOH A 2 502 2 HOH HOH . 
M 5 HOH A 3 503 3 HOH HOH . 
M 5 HOH A 4 504 4 HOH HOH . 
M 5 HOH A 5 505 5 HOH HOH . 
M 5 HOH A 6 506 6 HOH HOH . 
M 5 HOH A 7 507 7 HOH HOH . 
M 5 HOH A 8 508 8 HOH HOH . 
M 5 HOH A 9 509 9 HOH HOH . 
M 5 HOH A 10 510 10 HOH HOH . 
M 5 HOH A 11 511 11 HOH HOH . 
M 5 HOH A 12 512 12 HOH HOH . 
M 5 HOH A 13 513 13 HOH HOH . 
M 5 HOH A 14 514 14 HOH HOH . 
M 5 HOH A 15 515 15 HOH HOH . 
M 5 HOH A 16 516 16 HOH HOH . 
M 5 HOH A 17 517 17 HOH HOH . 
M 5 HOH A 18 518 18 HOH HOH . 
M 5 HOH A 19 519 20 HOH HOH . 
M 5 HOH A 20 520 21 HOH HOH . 
M 5 HOH A 21 521 22 HOH HOH . 
M 5 HOH A 22 522 23 HOH HOH . 
M 5 HOH A 23 523 24 HOH HOH . 
M 5 HOH A 24 524 25 HOH HOH . 
M 5 HOH A 25 525 26 HOH HOH . 
M 5 HOH A 26 526 27 HOH HOH . 
M 5 HOH A 27 527 28 HOH HOH . 
M 5 HOH A 28 528 29 HOH HOH . 
M 5 HOH A 29 529 30 HOH HOH . 
M 5 HOH A 30 530 31 HOH HOH . 
M 5 HOH A 31 531 33 HOH HOH . 
M 5 HOH A 32 532 34 HOH HOH . 
M 5 HOH A 33 533 35 HOH HOH . 
M 5 HOH A 34 534 36 HOH HOH . 
M 5 HOH A 35 535 37 HOH HOH . 
M 5 HOH A 36 536 38 HOH HOH . 
M 5 HOH A 37 537 39 HOH HOH . 
M 5 HOH A 38 538 40 HOH HOH . 
M 5 HOH A 39 539 41 HOH HOH . 
M 5 HOH A 40 540 42 HOH HOH . 
M 5 HOH A 41 541 43 HOH HOH . 
M 5 HOH A 42 542 44 HOH HOH . 
M 5 HOH A 43 543 46 HOH HOH . 
M 5 HOH A 44 544 47 HOH HOH . 
M 5 HOH A 45 545 48 HOH HOH . 
M 5 HOH A 46 546 49 HOH HOH . 
M 5 HOH A 47 547 50 HOH HOH . 
M 5 HOH A 48 548 51 HOH HOH . 
M 5 HOH A 49 549 52 HOH HOH . 
M 5 HOH A 50 550 53 HOH HOH . 
M 5 HOH A 51 551 54 HOH HOH . 
M 5 HOH A 52 552 55 HOH HOH . 
M 5 HOH A 53 553 56 HOH HOH . 
M 5 HOH A 54 554 57 HOH HOH . 
M 5 HOH A 55 555 59 HOH HOH . 
M 5 HOH A 56 556 60 HOH HOH . 
M 5 HOH A 57 557 61 HOH HOH . 
M 5 HOH A 58 558 62 HOH HOH . 
M 5 HOH A 59 559 64 HOH HOH . 
M 5 HOH A 60 560 65 HOH HOH . 
M 5 HOH A 61 561 66 HOH HOH . 
M 5 HOH A 62 562 67 HOH HOH . 
M 5 HOH A 63 563 68 HOH HOH . 
M 5 HOH A 64 564 70 HOH HOH . 
M 5 HOH A 65 565 71 HOH HOH . 
M 5 HOH A 66 566 72 HOH HOH . 
M 5 HOH A 67 567 73 HOH HOH . 
M 5 HOH A 68 568 75 HOH HOH . 
M 5 HOH A 69 569 76 HOH HOH . 
M 5 HOH A 70 570 77 HOH HOH . 
M 5 HOH A 71 571 78 HOH HOH . 
M 5 HOH A 72 572 79 HOH HOH . 
M 5 HOH A 73 573 80 HOH HOH . 
M 5 HOH A 74 574 81 HOH HOH . 
M 5 HOH A 75 575 82 HOH HOH . 
M 5 HOH A 76 576 83 HOH HOH . 
M 5 HOH A 77 577 84 HOH HOH . 
M 5 HOH A 78 578 85 HOH HOH . 
M 5 HOH A 79 579 86 HOH HOH . 
M 5 HOH A 80 580 87 HOH HOH . 
M 5 HOH A 81 581 88 HOH HOH . 
M 5 HOH A 82 582 89 HOH HOH . 
M 5 HOH A 83 583 90 HOH HOH . 
M 5 HOH A 84 584 91 HOH HOH . 
M 5 HOH A 85 585 92 HOH HOH . 
M 5 HOH A 86 586 93 HOH HOH . 
M 5 HOH A 87 587 94 HOH HOH . 
M 5 HOH A 88 588 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 3 87.678 66.456 6.316 1 46.86 ? C1 GOL 410 A 1 
HETATM 2 O O1 GOL . . . K 3 88.336 65.571 7.226 1 49.12 ? O1 GOL 410 A 1 
HETATM 3 C C2 GOL . . . K 3 86.775 65.613 5.428 1 46.71 ? C2 GOL 410 A 1 
HETATM 4 O O2 GOL . . . K 3 85.592 65.278 6.159 1 45.52 ? O2 GOL 410 A 1 
HETATM 5 C C3 GOL . . . K 3 86.408 66.396 4.166 1 47.28 ? C3 GOL 410 A 1 
HETATM 6 O O3 GOL . . . K 3 85.958 65.503 3.136 1 43.25 ? O3 GOL 410 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#