data_4DH6 # _model_server_result.job_id kQU1mT4Bj209gtLutL8nLg _model_server_result.datetime_utc '2024-10-20 00:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dh6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":411}' # _entry.id 4DH6 # _exptl.entry_id 4DH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 553.69 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2R)-N-[(2S,3R)-1-(1,3-benzodioxol-5-yl)-4-{[(4'S)-6'-(2,2-dimethylpropyl)-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl]amino}-3-hydroxybutan-2-yl]-2-methoxypropanamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DH6 _cell.length_a 103.694 _cell.length_b 103.694 _cell.length_c 168.866 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C31 H43 N3 O6' _chem_comp.formula_weight 553.69 _chem_comp.id 0KN _chem_comp.mon_nstd_flag . _chem_comp.name "(2R)-N-[(2S,3R)-1-(1,3-benzodioxol-5-yl)-4-{[(4'S)-6'-(2,2-dimethylpropyl)-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl]amino}-3-hydroxybutan-2-yl]-2-methoxypropanamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(2R)-N-((2S,3R)-1-(benzo[d][1,3]dioxol-5-yl)-3-hydroxy-4-((S)-6'-neopentyl-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridine]-4'-ylamino)butan-2-yl)-2-methoxypropanamide" # _atom_sites.entry_id 4DH6 _atom_sites.fract_transf_matrix[1][1] 0.009644 _atom_sites.fract_transf_matrix[1][2] 0.005568 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 1 IOD IOD . C 2 IOD A 1 402 2 IOD IOD . D 2 IOD A 1 403 3 IOD IOD . E 2 IOD A 1 404 4 IOD IOD . F 2 IOD A 1 405 5 IOD IOD . G 2 IOD A 1 406 6 IOD IOD . H 2 IOD A 1 407 8 IOD IOD . I 2 IOD A 1 408 9 IOD IOD . J 3 GOL A 1 409 1 GOL GOL . K 3 GOL A 1 410 2 GOL GOL . L 4 0KN A 1 411 1 0KN 0KN . M 5 HOH A 1 501 1 HOH HOH . M 5 HOH A 2 502 2 HOH HOH . M 5 HOH A 3 503 3 HOH HOH . M 5 HOH A 4 504 4 HOH HOH . M 5 HOH A 5 505 5 HOH HOH . M 5 HOH A 6 506 6 HOH HOH . M 5 HOH A 7 507 7 HOH HOH . M 5 HOH A 8 508 8 HOH HOH . M 5 HOH A 9 509 9 HOH HOH . M 5 HOH A 10 510 10 HOH HOH . M 5 HOH A 11 511 11 HOH HOH . M 5 HOH A 12 512 12 HOH HOH . M 5 HOH A 13 513 13 HOH HOH . M 5 HOH A 14 514 14 HOH HOH . M 5 HOH A 15 515 15 HOH HOH . M 5 HOH A 16 516 16 HOH HOH . M 5 HOH A 17 517 17 HOH HOH . M 5 HOH A 18 518 18 HOH HOH . M 5 HOH A 19 519 20 HOH HOH . M 5 HOH A 20 520 21 HOH HOH . M 5 HOH A 21 521 22 HOH HOH . M 5 HOH A 22 522 23 HOH HOH . M 5 HOH A 23 523 24 HOH HOH . M 5 HOH A 24 524 25 HOH HOH . M 5 HOH A 25 525 26 HOH HOH . M 5 HOH A 26 526 27 HOH HOH . M 5 HOH A 27 527 28 HOH HOH . M 5 HOH A 28 528 29 HOH HOH . M 5 HOH A 29 529 30 HOH HOH . M 5 HOH A 30 530 31 HOH HOH . M 5 HOH A 31 531 33 HOH HOH . M 5 HOH A 32 532 34 HOH HOH . M 5 HOH A 33 533 35 HOH HOH . M 5 HOH A 34 534 36 HOH HOH . M 5 HOH A 35 535 37 HOH HOH . M 5 HOH A 36 536 38 HOH HOH . M 5 HOH A 37 537 39 HOH HOH . M 5 HOH A 38 538 40 HOH HOH . M 5 HOH A 39 539 41 HOH HOH . M 5 HOH A 40 540 42 HOH HOH . M 5 HOH A 41 541 43 HOH HOH . M 5 HOH A 42 542 44 HOH HOH . M 5 HOH A 43 543 46 HOH HOH . M 5 HOH A 44 544 47 HOH HOH . M 5 HOH A 45 545 48 HOH HOH . M 5 HOH A 46 546 49 HOH HOH . M 5 HOH A 47 547 50 HOH HOH . M 5 HOH A 48 548 51 HOH HOH . M 5 HOH A 49 549 52 HOH HOH . M 5 HOH A 50 550 53 HOH HOH . M 5 HOH A 51 551 54 HOH HOH . M 5 HOH A 52 552 55 HOH HOH . M 5 HOH A 53 553 56 HOH HOH . M 5 HOH A 54 554 57 HOH HOH . M 5 HOH A 55 555 59 HOH HOH . M 5 HOH A 56 556 60 HOH HOH . M 5 HOH A 57 557 61 HOH HOH . M 5 HOH A 58 558 62 HOH HOH . M 5 HOH A 59 559 64 HOH HOH . M 5 HOH A 60 560 65 HOH HOH . M 5 HOH A 61 561 66 HOH HOH . M 5 HOH A 62 562 67 HOH HOH . M 5 HOH A 63 563 68 HOH HOH . M 5 HOH A 64 564 70 HOH HOH . M 5 HOH A 65 565 71 HOH HOH . M 5 HOH A 66 566 72 HOH HOH . M 5 HOH A 67 567 73 HOH HOH . M 5 HOH A 68 568 75 HOH HOH . M 5 HOH A 69 569 76 HOH HOH . M 5 HOH A 70 570 77 HOH HOH . M 5 HOH A 71 571 78 HOH HOH . M 5 HOH A 72 572 79 HOH HOH . M 5 HOH A 73 573 80 HOH HOH . M 5 HOH A 74 574 81 HOH HOH . M 5 HOH A 75 575 82 HOH HOH . M 5 HOH A 76 576 83 HOH HOH . M 5 HOH A 77 577 84 HOH HOH . M 5 HOH A 78 578 85 HOH HOH . M 5 HOH A 79 579 86 HOH HOH . M 5 HOH A 80 580 87 HOH HOH . M 5 HOH A 81 581 88 HOH HOH . M 5 HOH A 82 582 89 HOH HOH . M 5 HOH A 83 583 90 HOH HOH . M 5 HOH A 84 584 91 HOH HOH . M 5 HOH A 85 585 92 HOH HOH . M 5 HOH A 86 586 93 HOH HOH . M 5 HOH A 87 587 94 HOH HOH . M 5 HOH A 88 588 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 0KN . . . L 4 62.946 44.332 9.404 1 30.64 ? C29 0KN 411 A 1 HETATM 2 C C30 0KN . . . L 4 61.421 44.475 9.292 1 30.63 ? C30 0KN 411 A 1 HETATM 3 C C31 0KN . . . L 4 61.539 45.982 9.536 1 30.98 ? C31 0KN 411 A 1 HETATM 4 C C18 0KN . . . L 4 63.078 45.855 9.544 1 30.89 ? C18 0KN 411 A 1 HETATM 5 C C19 0KN . . . L 4 63.748 46.482 8.309 1 29.83 ? C19 0KN 411 A 1 HETATM 6 O O17 0KN . . . L 4 63.712 46.225 10.786 1 31.06 ? O17 0KN 411 A 1 HETATM 7 C C16 0KN . . . L 4 63.957 47.561 10.973 1 31.07 ? C16 0KN 411 A 1 HETATM 8 N N23 0KN . . . L 4 64.16 47.984 12.239 1 31.76 ? N23 0KN 411 A 1 HETATM 9 C C22 0KN . . . L 4 64.41 49.254 12.53 1 31.28 ? C22 0KN 411 A 1 HETATM 10 C C21 0KN . . . L 4 64.472 50.21 11.516 1 30.98 ? C21 0KN 411 A 1 HETATM 11 C C24 0KN . . . L 4 64.758 51.682 11.859 1 29.71 ? C24 0KN 411 A 1 HETATM 12 C C25 0KN . . . L 4 63.528 52.443 12.377 1 29.84 ? C25 0KN 411 A 1 HETATM 13 C C27 0KN . . . L 4 63.975 53.774 12.978 1 29.27 ? C27 0KN 411 A 1 HETATM 14 C C28 0KN . . . L 4 62.777 51.649 13.451 1 29.35 ? C28 0KN 411 A 1 HETATM 15 C C26 0KN . . . L 4 62.57 52.739 11.218 1 29.08 ? C26 0KN 411 A 1 HETATM 16 C C20 0KN . . . L 4 64.275 49.812 10.191 1 30.29 ? C20 0KN 411 A 1 HETATM 17 C C15 0KN . . . L 4 64.019 48.471 9.905 1 30.44 ? C15 0KN 411 A 1 HETATM 18 C C6 0KN . . . L 4 63.794 48.016 8.436 1 30.02 ? C6 0KN 411 A 1 HETATM 19 N N5 0KN . . . L 4 64.816 48.571 7.512 1 29.53 ? N5 0KN 411 A 1 HETATM 20 C C4 0KN . . . L 4 66.225 48.306 7.89 1 28.6 ? C4 0KN 411 A 1 HETATM 21 C C3 0KN . . . L 4 67.126 49.291 7.144 1 28.18 ? C3 0KN 411 A 1 HETATM 22 O O14 0KN . . . L 4 66.741 50.617 7.505 1 27.65 ? O14 0KN 411 A 1 HETATM 23 C C2 0KN . . . L 4 68.62 49.103 7.445 1 29.01 ? C2 0KN 411 A 1 HETATM 24 N N1 0KN . . . L 4 69.108 47.76 7.105 1 29.09 ? N1 0KN 411 A 1 HETATM 25 C C35 0KN . . . L 4 69.386 46.836 8.023 1 30.18 ? C35 0KN 411 A 1 HETATM 26 O O36 0KN . . . L 4 69.166 46.962 9.229 1 29.38 ? O36 0KN 411 A 1 HETATM 27 C C37 0KN . . . L 4 69.927 45.508 7.516 1 31.5 ? C37 0KN 411 A 1 HETATM 28 C C38 0KN . . . L 4 71.45 45.593 7.367 1 30.63 ? C38 0KN 411 A 1 HETATM 29 O O39 0KN . . . L 4 69.505 44.501 8.445 1 33.09 ? O39 0KN 411 A 1 HETATM 30 C C40 0KN . . . L 4 68.302 43.877 7.96 1 32.71 ? C40 0KN 411 A 1 HETATM 31 C C7 0KN . . . L 4 69.512 50.072 6.655 1 29.12 ? C7 0KN 411 A 1 HETATM 32 C C8 0KN . . . L 4 70.947 49.895 7.139 1 29.8 ? C8 0KN 411 A 1 HETATM 33 C C9 0KN . . . L 4 71.98 49.549 6.272 1 30.53 ? C9 0KN 411 A 1 HETATM 34 C C10 0KN . . . L 4 73.268 49.403 6.797 1 32.45 ? C10 0KN 411 A 1 HETATM 35 O O32 0KN . . . L 4 74.452 49.081 6.202 1 33.98 ? O32 0KN 411 A 1 HETATM 36 C C33 0KN . . . L 4 75.283 48.635 7.306 1 34.07 ? C33 0KN 411 A 1 HETATM 37 O O34 0KN . . . L 4 74.83 49.393 8.436 1 33.28 ? O34 0KN 411 A 1 HETATM 38 C C11 0KN . . . L 4 73.514 49.594 8.167 1 31.97 ? C11 0KN 411 A 1 HETATM 39 C C12 0KN . . . L 4 72.48 49.932 9.015 1 31.48 ? C12 0KN 411 A 1 HETATM 40 C C13 0KN . . . L 4 71.203 50.081 8.493 1 30.79 ? C13 0KN 411 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 443 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #