data_4DHD # _model_server_result.job_id 5qVix-xAxhwGDOL4ToFYSw _model_server_result.datetime_utc '2024-11-12 21:06:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4DHD # _exptl.entry_id 4DHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DHD _cell.length_a 61.401 _cell.length_b 89.269 _cell.length_c 149.542 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -74.771 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 253 n n P O2 PO4 sing 254 n n P O3 PO4 sing 255 n n P O4 PO4 sing 256 n n # _atom_sites.entry_id 4DHD _atom_sites.fract_transf_matrix[1][1] 0.016286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 1 PO4 PO4 . C 3 CL A 1 402 1 CL CL . D 4 ACT A 1 403 1 ACT ACT . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 8 HOH HOH . E 5 HOH A 9 509 9 HOH HOH . E 5 HOH A 10 510 10 HOH HOH . E 5 HOH A 11 511 11 HOH HOH . E 5 HOH A 12 512 12 HOH HOH . E 5 HOH A 13 513 13 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 16 HOH HOH . E 5 HOH A 17 517 17 HOH HOH . E 5 HOH A 18 518 18 HOH HOH . E 5 HOH A 19 519 19 HOH HOH . E 5 HOH A 20 520 20 HOH HOH . E 5 HOH A 21 521 21 HOH HOH . E 5 HOH A 22 522 22 HOH HOH . E 5 HOH A 23 523 23 HOH HOH . E 5 HOH A 24 524 24 HOH HOH . E 5 HOH A 25 525 25 HOH HOH . E 5 HOH A 26 526 26 HOH HOH . E 5 HOH A 27 527 27 HOH HOH . E 5 HOH A 28 528 28 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 30 HOH HOH . E 5 HOH A 31 531 31 HOH HOH . E 5 HOH A 32 532 32 HOH HOH . E 5 HOH A 33 533 33 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 35 HOH HOH . E 5 HOH A 36 536 36 HOH HOH . E 5 HOH A 37 537 37 HOH HOH . E 5 HOH A 38 538 38 HOH HOH . E 5 HOH A 39 539 39 HOH HOH . E 5 HOH A 40 540 40 HOH HOH . E 5 HOH A 41 541 41 HOH HOH . E 5 HOH A 42 542 42 HOH HOH . E 5 HOH A 43 543 43 HOH HOH . E 5 HOH A 44 544 44 HOH HOH . E 5 HOH A 45 545 45 HOH HOH . E 5 HOH A 46 546 46 HOH HOH . E 5 HOH A 47 547 47 HOH HOH . E 5 HOH A 48 548 48 HOH HOH . E 5 HOH A 49 549 49 HOH HOH . E 5 HOH A 50 550 50 HOH HOH . E 5 HOH A 51 551 52 HOH HOH . E 5 HOH A 52 552 53 HOH HOH . E 5 HOH A 53 553 54 HOH HOH . E 5 HOH A 54 554 55 HOH HOH . E 5 HOH A 55 555 56 HOH HOH . E 5 HOH A 56 556 57 HOH HOH . E 5 HOH A 57 557 58 HOH HOH . E 5 HOH A 58 558 59 HOH HOH . E 5 HOH A 59 559 60 HOH HOH . E 5 HOH A 60 560 61 HOH HOH . E 5 HOH A 61 561 62 HOH HOH . E 5 HOH A 62 562 63 HOH HOH . E 5 HOH A 63 563 64 HOH HOH . E 5 HOH A 64 564 65 HOH HOH . E 5 HOH A 65 565 66 HOH HOH . E 5 HOH A 66 566 67 HOH HOH . E 5 HOH A 67 567 68 HOH HOH . E 5 HOH A 68 568 69 HOH HOH . E 5 HOH A 69 569 70 HOH HOH . E 5 HOH A 70 570 71 HOH HOH . E 5 HOH A 71 571 72 HOH HOH . E 5 HOH A 72 572 73 HOH HOH . E 5 HOH A 73 573 74 HOH HOH . E 5 HOH A 74 574 75 HOH HOH . E 5 HOH A 75 575 76 HOH HOH . E 5 HOH A 76 576 77 HOH HOH . E 5 HOH A 77 577 78 HOH HOH . E 5 HOH A 78 578 80 HOH HOH . E 5 HOH A 79 579 81 HOH HOH . E 5 HOH A 80 580 82 HOH HOH . E 5 HOH A 81 581 83 HOH HOH . E 5 HOH A 82 582 84 HOH HOH . E 5 HOH A 83 583 85 HOH HOH . E 5 HOH A 84 584 86 HOH HOH . E 5 HOH A 85 585 87 HOH HOH . E 5 HOH A 86 586 88 HOH HOH . E 5 HOH A 87 587 89 HOH HOH . E 5 HOH A 88 588 90 HOH HOH . E 5 HOH A 89 589 91 HOH HOH . E 5 HOH A 90 590 92 HOH HOH . E 5 HOH A 91 591 93 HOH HOH . E 5 HOH A 92 592 94 HOH HOH . E 5 HOH A 93 593 95 HOH HOH . E 5 HOH A 94 594 96 HOH HOH . E 5 HOH A 95 595 97 HOH HOH . E 5 HOH A 96 596 98 HOH HOH . E 5 HOH A 97 597 99 HOH HOH . E 5 HOH A 98 598 100 HOH HOH . E 5 HOH A 99 599 101 HOH HOH . E 5 HOH A 100 600 102 HOH HOH . E 5 HOH A 101 601 103 HOH HOH . E 5 HOH A 102 602 104 HOH HOH . E 5 HOH A 103 603 105 HOH HOH . E 5 HOH A 104 604 106 HOH HOH . E 5 HOH A 105 605 107 HOH HOH . E 5 HOH A 106 606 108 HOH HOH . E 5 HOH A 107 607 109 HOH HOH . E 5 HOH A 108 608 110 HOH HOH . E 5 HOH A 109 609 111 HOH HOH . E 5 HOH A 110 610 112 HOH HOH . E 5 HOH A 111 611 113 HOH HOH . E 5 HOH A 112 612 114 HOH HOH . E 5 HOH A 113 613 115 HOH HOH . E 5 HOH A 114 614 116 HOH HOH . E 5 HOH A 115 615 118 HOH HOH . E 5 HOH A 116 616 119 HOH HOH . E 5 HOH A 117 617 120 HOH HOH . E 5 HOH A 118 618 121 HOH HOH . E 5 HOH A 119 619 122 HOH HOH . E 5 HOH A 120 620 123 HOH HOH . E 5 HOH A 121 621 124 HOH HOH . E 5 HOH A 122 622 125 HOH HOH . E 5 HOH A 123 623 126 HOH HOH . E 5 HOH A 124 624 127 HOH HOH . E 5 HOH A 125 625 128 HOH HOH . E 5 HOH A 126 626 129 HOH HOH . E 5 HOH A 127 627 130 HOH HOH . E 5 HOH A 128 628 131 HOH HOH . E 5 HOH A 129 629 132 HOH HOH . E 5 HOH A 130 630 133 HOH HOH . E 5 HOH A 131 631 134 HOH HOH . E 5 HOH A 132 632 135 HOH HOH . E 5 HOH A 133 633 137 HOH HOH . E 5 HOH A 134 634 138 HOH HOH . E 5 HOH A 135 635 139 HOH HOH . E 5 HOH A 136 636 140 HOH HOH . E 5 HOH A 137 637 141 HOH HOH . E 5 HOH A 138 638 142 HOH HOH . E 5 HOH A 139 639 143 HOH HOH . E 5 HOH A 140 640 144 HOH HOH . E 5 HOH A 141 641 145 HOH HOH . E 5 HOH A 142 642 146 HOH HOH . E 5 HOH A 143 643 148 HOH HOH . E 5 HOH A 144 644 149 HOH HOH . E 5 HOH A 145 645 150 HOH HOH . E 5 HOH A 146 646 151 HOH HOH . E 5 HOH A 147 647 152 HOH HOH . E 5 HOH A 148 648 153 HOH HOH . E 5 HOH A 149 649 154 HOH HOH . E 5 HOH A 150 650 155 HOH HOH . E 5 HOH A 151 651 156 HOH HOH . E 5 HOH A 152 652 157 HOH HOH . E 5 HOH A 153 653 158 HOH HOH . E 5 HOH A 154 654 159 HOH HOH . E 5 HOH A 155 655 160 HOH HOH . E 5 HOH A 156 656 161 HOH HOH . E 5 HOH A 157 657 162 HOH HOH . E 5 HOH A 158 658 163 HOH HOH . E 5 HOH A 159 659 164 HOH HOH . E 5 HOH A 160 660 165 HOH HOH . E 5 HOH A 161 661 166 HOH HOH . E 5 HOH A 162 662 167 HOH HOH . E 5 HOH A 163 663 168 HOH HOH . E 5 HOH A 164 664 169 HOH HOH . E 5 HOH A 165 665 170 HOH HOH . E 5 HOH A 166 666 171 HOH HOH . E 5 HOH A 167 667 173 HOH HOH . E 5 HOH A 168 668 174 HOH HOH . E 5 HOH A 169 669 175 HOH HOH . E 5 HOH A 170 670 176 HOH HOH . E 5 HOH A 171 671 177 HOH HOH . E 5 HOH A 172 672 178 HOH HOH . E 5 HOH A 173 673 180 HOH HOH . E 5 HOH A 174 674 181 HOH HOH . E 5 HOH A 175 675 182 HOH HOH . E 5 HOH A 176 676 183 HOH HOH . E 5 HOH A 177 677 184 HOH HOH . E 5 HOH A 178 678 185 HOH HOH . E 5 HOH A 179 679 186 HOH HOH . E 5 HOH A 180 680 187 HOH HOH . E 5 HOH A 181 681 188 HOH HOH . E 5 HOH A 182 682 189 HOH HOH . E 5 HOH A 183 683 190 HOH HOH . E 5 HOH A 184 684 191 HOH HOH . E 5 HOH A 185 685 192 HOH HOH . E 5 HOH A 186 686 193 HOH HOH . E 5 HOH A 187 687 194 HOH HOH . E 5 HOH A 188 688 195 HOH HOH . E 5 HOH A 189 689 197 HOH HOH . E 5 HOH A 190 690 198 HOH HOH . E 5 HOH A 191 691 199 HOH HOH . E 5 HOH A 192 692 200 HOH HOH . E 5 HOH A 193 693 201 HOH HOH . E 5 HOH A 194 694 204 HOH HOH . E 5 HOH A 195 695 205 HOH HOH . E 5 HOH A 196 696 206 HOH HOH . E 5 HOH A 197 697 207 HOH HOH . E 5 HOH A 198 698 208 HOH HOH . E 5 HOH A 199 699 209 HOH HOH . E 5 HOH A 200 700 210 HOH HOH . E 5 HOH A 201 701 211 HOH HOH . E 5 HOH A 202 702 212 HOH HOH . E 5 HOH A 203 703 213 HOH HOH . E 5 HOH A 204 704 214 HOH HOH . E 5 HOH A 205 705 215 HOH HOH . E 5 HOH A 206 706 216 HOH HOH . E 5 HOH A 207 707 217 HOH HOH . E 5 HOH A 208 708 219 HOH HOH . E 5 HOH A 209 709 221 HOH HOH . E 5 HOH A 210 710 222 HOH HOH . E 5 HOH A 211 711 223 HOH HOH . E 5 HOH A 212 712 224 HOH HOH . E 5 HOH A 213 713 225 HOH HOH . E 5 HOH A 214 714 226 HOH HOH . E 5 HOH A 215 715 227 HOH HOH . E 5 HOH A 216 716 228 HOH HOH . E 5 HOH A 217 717 229 HOH HOH . E 5 HOH A 218 718 230 HOH HOH . E 5 HOH A 219 719 231 HOH HOH . E 5 HOH A 220 720 232 HOH HOH . E 5 HOH A 221 721 233 HOH HOH . E 5 HOH A 222 722 234 HOH HOH . E 5 HOH A 223 723 235 HOH HOH . E 5 HOH A 224 724 236 HOH HOH . E 5 HOH A 225 725 237 HOH HOH . E 5 HOH A 226 726 238 HOH HOH . E 5 HOH A 227 727 239 HOH HOH . E 5 HOH A 228 728 240 HOH HOH . E 5 HOH A 229 729 241 HOH HOH . E 5 HOH A 230 730 242 HOH HOH . E 5 HOH A 231 731 243 HOH HOH . E 5 HOH A 232 732 244 HOH HOH . E 5 HOH A 233 733 245 HOH HOH . E 5 HOH A 234 734 246 HOH HOH . E 5 HOH A 235 735 247 HOH HOH . E 5 HOH A 236 736 248 HOH HOH . E 5 HOH A 237 737 249 HOH HOH . E 5 HOH A 238 738 250 HOH HOH . E 5 HOH A 239 739 251 HOH HOH . E 5 HOH A 240 740 252 HOH HOH . E 5 HOH A 241 741 253 HOH HOH . E 5 HOH A 242 742 254 HOH HOH . E 5 HOH A 243 743 255 HOH HOH . E 5 HOH A 244 744 256 HOH HOH . E 5 HOH A 245 745 257 HOH HOH . E 5 HOH A 246 746 258 HOH HOH . E 5 HOH A 247 747 259 HOH HOH . E 5 HOH A 248 748 260 HOH HOH . E 5 HOH A 249 749 261 HOH HOH . E 5 HOH A 250 750 262 HOH HOH . E 5 HOH A 251 751 263 HOH HOH . E 5 HOH A 252 752 264 HOH HOH . E 5 HOH A 253 753 265 HOH HOH . E 5 HOH A 254 754 266 HOH HOH . E 5 HOH A 255 755 267 HOH HOH . E 5 HOH A 256 756 268 HOH HOH . E 5 HOH A 257 757 269 HOH HOH . E 5 HOH A 258 758 270 HOH HOH . E 5 HOH A 259 759 271 HOH HOH . E 5 HOH A 260 760 272 HOH HOH . E 5 HOH A 261 761 273 HOH HOH . E 5 HOH A 262 762 274 HOH HOH . E 5 HOH A 263 763 275 HOH HOH . E 5 HOH A 264 764 276 HOH HOH . E 5 HOH A 265 765 277 HOH HOH . E 5 HOH A 266 766 278 HOH HOH . E 5 HOH A 267 767 279 HOH HOH . E 5 HOH A 268 768 280 HOH HOH . E 5 HOH A 269 769 281 HOH HOH . E 5 HOH A 270 770 282 HOH HOH . E 5 HOH A 271 771 283 HOH HOH . E 5 HOH A 272 772 284 HOH HOH . E 5 HOH A 273 773 285 HOH HOH . E 5 HOH A 274 774 286 HOH HOH . E 5 HOH A 275 775 287 HOH HOH . E 5 HOH A 276 776 288 HOH HOH . E 5 HOH A 277 777 289 HOH HOH . E 5 HOH A 278 778 290 HOH HOH . E 5 HOH A 279 779 291 HOH HOH . E 5 HOH A 280 780 292 HOH HOH . E 5 HOH A 281 781 293 HOH HOH . E 5 HOH A 282 782 294 HOH HOH . E 5 HOH A 283 783 295 HOH HOH . E 5 HOH A 284 784 296 HOH HOH . E 5 HOH A 285 785 297 HOH HOH . E 5 HOH A 286 786 298 HOH HOH . E 5 HOH A 287 787 299 HOH HOH . E 5 HOH A 288 788 300 HOH HOH . E 5 HOH A 289 789 301 HOH HOH . E 5 HOH A 290 790 302 HOH HOH . E 5 HOH A 291 791 303 HOH HOH . E 5 HOH A 292 792 304 HOH HOH . E 5 HOH A 293 793 305 HOH HOH . E 5 HOH A 294 794 306 HOH HOH . E 5 HOH A 295 795 307 HOH HOH . E 5 HOH A 296 796 308 HOH HOH . E 5 HOH A 297 797 309 HOH HOH . E 5 HOH A 298 798 310 HOH HOH . E 5 HOH A 299 799 311 HOH HOH . E 5 HOH A 300 800 312 HOH HOH . E 5 HOH A 301 801 313 HOH HOH . E 5 HOH A 302 802 314 HOH HOH . E 5 HOH A 303 803 315 HOH HOH . E 5 HOH A 304 804 316 HOH HOH . E 5 HOH A 305 805 317 HOH HOH . E 5 HOH A 306 806 318 HOH HOH . E 5 HOH A 307 807 319 HOH HOH . E 5 HOH A 308 808 320 HOH HOH . E 5 HOH A 309 809 321 HOH HOH . E 5 HOH A 310 810 322 HOH HOH . E 5 HOH A 311 811 323 HOH HOH . E 5 HOH A 312 812 324 HOH HOH . E 5 HOH A 313 813 325 HOH HOH . E 5 HOH A 314 814 326 HOH HOH . E 5 HOH A 315 815 327 HOH HOH . E 5 HOH A 316 816 328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 17.472 2.098 -28.184 1 26.54 ? P PO4 401 A 1 HETATM 2 O O1 PO4 . . . B 2 18.058 3.339 -28.83 1 28.75 ? O1 PO4 401 A 1 HETATM 3 O O2 PO4 . . . B 2 16.804 1.219 -29.213 1 25.85 ? O2 PO4 401 A 1 HETATM 4 O O3 PO4 . . . B 2 18.633 1.351 -27.545 1 26.45 ? O3 PO4 401 A 1 HETATM 5 O O4 PO4 . . . B 2 16.528 2.49 -27.069 1 29.39 ? O4 PO4 401 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #