data_4DHF # _model_server_result.job_id Yxwl93BYVIG_feJzMyboFA _model_server_result.datetime_utc '2024-10-10 01:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4DHF # _exptl.entry_id 4DHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.537 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-cyclopentyl-2-({1-methyl-5-[(4-methylpiperazin-1-yl)carbonyl]-1H-pyrrol-3-yl}amino)-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DHF _cell.length_a 81.59 _cell.length_b 81.59 _cell.length_c 166.065 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 261 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 D O1 PO4 . A PO4 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc3 B OD1 ASN 141 B ASN 261 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc4 G O3 PO4 . B PO4 402 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'C23 H30 N8 O2' _chem_comp.formula_weight 450.537 _chem_comp.id 0K6 _chem_comp.mon_nstd_flag . _chem_comp.name 7-cyclopentyl-2-({1-methyl-5-[(4-methylpiperazin-1-yl)carbonyl]-1H-pyrrol-3-yl}amino)-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 0K6 sing 1 n n C5 N2 0K6 sing 2 n n C6 N1 0K6 sing 3 n n N2 C4 0K6 sing 4 n n N2 C3 0K6 sing 5 n n O1 C1 0K6 doub 6 n n N1 C1 0K6 sing 7 n n N1 C2 0K6 sing 8 n n C8 N3 0K6 sing 9 n n C3 C2 0K6 sing 10 n n C1 C7 0K6 sing 11 n n C15 C16 0K6 sing 12 n n C15 C14 0K6 sing 13 n n C16 C17 0K6 sing 14 n n N3 C7 0K6 sing 15 n y N3 C9 0K6 sing 16 n y C7 C23 0K6 doub 17 n y C14 C13 0K6 sing 18 n n C17 C13 0K6 sing 19 n n C9 C10 0K6 doub 20 n y C23 C10 0K6 sing 21 n y C13 N6 0K6 sing 22 n n C10 N4 0K6 sing 23 n n N7 C19 0K6 sing 24 n n N6 C12 0K6 sing 25 n y N6 C18 0K6 sing 26 n y N5 C12 0K6 doub 27 n y N5 C11 0K6 sing 28 n y N4 C11 0K6 sing 29 n n C12 C21 0K6 sing 30 n y C19 C18 0K6 sing 31 n n C19 O2 0K6 doub 32 n n C11 N8 0K6 doub 33 n y C18 C20 0K6 doub 34 n y C21 C20 0K6 sing 35 n y C21 C22 0K6 doub 36 n y N8 C22 0K6 sing 37 n y N7 H1 0K6 sing 38 n n N7 H2 0K6 sing 39 n n C13 H3 0K6 sing 40 n n C17 H4 0K6 sing 41 n n C17 H5 0K6 sing 42 n n C16 H6 0K6 sing 43 n n C16 H7 0K6 sing 44 n n C15 H8 0K6 sing 45 n n C15 H9 0K6 sing 46 n n C14 H10 0K6 sing 47 n n C14 H11 0K6 sing 48 n n C20 H12 0K6 sing 49 n n C22 H13 0K6 sing 50 n n N4 H14 0K6 sing 51 n n C9 H15 0K6 sing 52 n n C8 H16 0K6 sing 53 n n C8 H17 0K6 sing 54 n n C8 H18 0K6 sing 55 n n C23 H19 0K6 sing 56 n n C6 H20 0K6 sing 57 n n C6 H21 0K6 sing 58 n n C5 H22 0K6 sing 59 n n C5 H23 0K6 sing 60 n n C4 H25 0K6 sing 61 n n C4 H26 0K6 sing 62 n n C4 H27 0K6 sing 63 n n C3 H28 0K6 sing 64 n n C3 H29 0K6 sing 65 n n C2 H30 0K6 sing 66 n n C2 H31 0K6 sing 67 n n # _atom_sites.entry_id 4DHF _atom_sites.fract_transf_matrix[1][1] 0.012256 _atom_sites.fract_transf_matrix[1][2] 0.007076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0K6 A 1 401 401 0K6 BIO . D 3 PO4 A 1 402 402 PO4 PO4 . E 4 MG A 1 403 404 MG MG . F 2 0K6 B 1 401 401 0K6 BIO . G 3 PO4 B 1 402 402 PO4 PO4 . H 4 MG B 1 403 404 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 0K6 . . . F 2 -32.148 43.095 -44.199 1 74.17 ? O2 0K6 401 B 1 HETATM 2 C C19 0K6 . . . F 2 -33.309 43.381 -43.884 1 70.84 ? C19 0K6 401 B 1 HETATM 3 N N7 0K6 . . . F 2 -33.673 44.602 -43.469 1 82.56 ? N7 0K6 401 B 1 HETATM 4 C C18 0K6 . . . F 2 -34.338 42.298 -43.952 1 60.42 ? C18 0K6 401 B 1 HETATM 5 N N6 0K6 . . . F 2 -34.857 41.673 -42.859 1 50.08 ? N6 0K6 401 B 1 HETATM 6 C C13 0K6 . . . F 2 -34.436 42.036 -41.465 1 46.93 ? C13 0K6 401 B 1 HETATM 7 C C17 0K6 . . . F 2 -35.525 42.575 -40.555 1 40.43 ? C17 0K6 401 B 1 HETATM 8 C C16 0K6 . . . F 2 -34.909 42.395 -39.175 1 39.84 ? C16 0K6 401 B 1 HETATM 9 C C15 0K6 . . . F 2 -34.073 41.136 -39.204 1 38.42 ? C15 0K6 401 B 1 HETATM 10 C C14 0K6 . . . F 2 -33.721 40.933 -40.673 1 44.06 ? C14 0K6 401 B 1 HETATM 11 C C20 0K6 . . . F 2 -34.865 41.794 -45.151 1 54.1 ? C20 0K6 401 B 1 HETATM 12 C C21 0K6 . . . F 2 -35.743 40.795 -44.653 1 52.82 ? C21 0K6 401 B 1 HETATM 13 C C12 0K6 . . . F 2 -35.733 40.741 -43.267 1 51.19 ? C12 0K6 401 B 1 HETATM 14 N N5 0K6 . . . F 2 -36.518 39.854 -42.632 1 50.52 ? N5 0K6 401 B 1 HETATM 15 C C22 0K6 . . . F 2 -36.55 39.94 -45.391 1 50.4 ? C22 0K6 401 B 1 HETATM 16 N N8 0K6 . . . F 2 -37.307 39.074 -44.711 1 48.14 ? N8 0K6 401 B 1 HETATM 17 C C11 0K6 . . . F 2 -37.302 39.025 -43.354 1 51.88 ? C11 0K6 401 B 1 HETATM 18 N N4 0K6 . . . F 2 -38.085 38.098 -42.736 1 59.42 ? N4 0K6 401 B 1 HETATM 19 C C10 0K6 . . . F 2 -38.261 37.965 -41.4 1 58.31 ? C10 0K6 401 B 1 HETATM 20 C C9 0K6 . . . F 2 -37.561 38.606 -40.397 1 61.05 ? C9 0K6 401 B 1 HETATM 21 N N3 0K6 . . . F 2 -38.067 38.231 -39.213 1 66.08 ? N3 0K6 401 B 1 HETATM 22 C C8 0K6 . . . F 2 -37.531 38.738 -37.918 1 61.52 ? C8 0K6 401 B 1 HETATM 23 C C23 0K6 . . . F 2 -39.217 37.171 -40.786 1 60.21 ? C23 0K6 401 B 1 HETATM 24 C C7 0K6 . . . F 2 -39.071 37.329 -39.414 1 65.4 ? C7 0K6 401 B 1 HETATM 25 C C1 0K6 . . . F 2 -39.928 36.692 -38.351 1 67.31 ? C1 0K6 401 B 1 HETATM 26 O O1 0K6 . . . F 2 -40.405 37.51 -37.582 1 74.52 ? O1 0K6 401 B 1 HETATM 27 N N1 0K6 . . . F 2 -40.245 35.378 -38.219 1 68.55 ? N1 0K6 401 B 1 HETATM 28 C C6 0K6 . . . F 2 -39.743 34.34 -39.136 1 66.49 ? C6 0K6 401 B 1 HETATM 29 C C5 0K6 . . . F 2 -39.435 33.039 -38.38 1 68.55 ? C5 0K6 401 B 1 HETATM 30 N N2 0K6 . . . F 2 -40.613 32.748 -37.579 1 68.7 ? N2 0K6 401 B 1 HETATM 31 C C4 0K6 . . . F 2 -41.525 31.641 -37.91 1 60.99 ? C4 0K6 401 B 1 HETATM 32 C C3 0K6 . . . F 2 -40.818 33.655 -36.468 1 66.05 ? C3 0K6 401 B 1 HETATM 33 C C2 0K6 . . . F 2 -41.198 34.976 -37.155 1 63.67 ? C2 0K6 401 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #