data_4DHK # _model_server_result.job_id 1U4y6zIobN-Pa9mBlCY3Dw _model_server_result.datetime_utc '2024-11-22 18:55:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 4DHK # _exptl.entry_id 4DHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DHK _cell.length_a 92.87 _cell.length_b 92.87 _cell.length_c 137.59 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 PISA trimeric 3 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 A,C,D,E,F,G,J 3 1,2,3 B,H,I,K 3 4,5,6 A,C,D,E,F,G,J 4 1,2,3 B,H,I,K 5 1,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -46.435 80.427779 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -92.87 0 0 4 'crystal symmetry operation' 4_455 x-1/3,y+1/3,z+1/3 1 0 0 0 1 0 0 0 1 -46.435 26.80926 45.863333 5 'crystal symmetry operation' 5_455 -y-1/3,x-y+1/3,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -46.435 26.80926 45.863333 6 'crystal symmetry operation' 6_455 -x+y-1/3,-x+1/3,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -46.435 26.80926 45.863333 7 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 8 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4DHK _atom_sites.fract_transf_matrix[1][1] 0.010768 _atom_sites.fract_transf_matrix[1][2] 0.006217 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO . D 2 EDO A 1 202 2 EDO EDO . E 2 EDO A 1 203 5 EDO EDO . F 2 EDO A 1 204 6 EDO EDO . G 2 EDO A 1 205 7 EDO EDO . H 2 EDO B 1 201 3 EDO EDO . I 2 EDO B 1 202 4 EDO EDO . J 3 HOH A 1 301 2 HOH HOH . J 3 HOH A 2 302 4 HOH HOH . J 3 HOH A 3 303 6 HOH HOH . J 3 HOH A 4 304 7 HOH HOH . J 3 HOH A 5 305 8 HOH HOH . J 3 HOH A 6 306 10 HOH HOH . J 3 HOH A 7 307 12 HOH HOH . J 3 HOH A 8 308 13 HOH HOH . J 3 HOH A 9 309 14 HOH HOH . J 3 HOH A 10 310 15 HOH HOH . J 3 HOH A 11 311 16 HOH HOH . J 3 HOH A 12 312 18 HOH HOH . J 3 HOH A 13 313 19 HOH HOH . J 3 HOH A 14 314 22 HOH HOH . J 3 HOH A 15 315 23 HOH HOH . J 3 HOH A 16 316 25 HOH HOH . J 3 HOH A 17 317 26 HOH HOH . J 3 HOH A 18 318 27 HOH HOH . J 3 HOH A 19 319 28 HOH HOH . J 3 HOH A 20 320 29 HOH HOH . J 3 HOH A 21 321 30 HOH HOH . J 3 HOH A 22 322 31 HOH HOH . J 3 HOH A 23 323 32 HOH HOH . J 3 HOH A 24 324 33 HOH HOH . J 3 HOH A 25 325 34 HOH HOH . J 3 HOH A 26 326 37 HOH HOH . J 3 HOH A 27 327 38 HOH HOH . J 3 HOH A 28 328 39 HOH HOH . J 3 HOH A 29 329 44 HOH HOH . J 3 HOH A 30 330 45 HOH HOH . J 3 HOH A 31 331 46 HOH HOH . J 3 HOH A 32 332 47 HOH HOH . J 3 HOH A 33 333 48 HOH HOH . J 3 HOH A 34 334 50 HOH HOH . J 3 HOH A 35 335 53 HOH HOH . J 3 HOH A 36 336 54 HOH HOH . J 3 HOH A 37 337 55 HOH HOH . J 3 HOH A 38 338 58 HOH HOH . J 3 HOH A 39 339 59 HOH HOH . J 3 HOH A 40 340 60 HOH HOH . J 3 HOH A 41 341 65 HOH HOH . J 3 HOH A 42 342 68 HOH HOH . J 3 HOH A 43 343 70 HOH HOH . J 3 HOH A 44 344 72 HOH HOH . J 3 HOH A 45 345 75 HOH HOH . J 3 HOH A 46 346 76 HOH HOH . J 3 HOH A 47 347 81 HOH HOH . J 3 HOH A 48 348 83 HOH HOH . J 3 HOH A 49 349 84 HOH HOH . J 3 HOH A 50 350 86 HOH HOH . J 3 HOH A 51 351 87 HOH HOH . J 3 HOH A 52 352 89 HOH HOH . J 3 HOH A 53 353 90 HOH HOH . J 3 HOH A 54 354 91 HOH HOH . J 3 HOH A 55 355 92 HOH HOH . J 3 HOH A 56 356 93 HOH HOH . J 3 HOH A 57 357 94 HOH HOH . J 3 HOH A 58 358 95 HOH HOH . J 3 HOH A 59 359 96 HOH HOH . J 3 HOH A 60 360 97 HOH HOH . J 3 HOH A 61 361 99 HOH HOH . J 3 HOH A 62 362 100 HOH HOH . J 3 HOH A 63 363 103 HOH HOH . J 3 HOH A 64 364 105 HOH HOH . J 3 HOH A 65 365 106 HOH HOH . J 3 HOH A 66 366 109 HOH HOH . J 3 HOH A 67 367 110 HOH HOH . J 3 HOH A 68 368 111 HOH HOH . J 3 HOH A 69 369 112 HOH HOH . J 3 HOH A 70 370 113 HOH HOH . J 3 HOH A 71 371 116 HOH HOH . J 3 HOH A 72 372 117 HOH HOH . J 3 HOH A 73 373 118 HOH HOH . J 3 HOH A 74 374 121 HOH HOH . J 3 HOH A 75 375 122 HOH HOH . J 3 HOH A 76 376 123 HOH HOH . J 3 HOH A 77 377 126 HOH HOH . J 3 HOH A 78 378 127 HOH HOH . J 3 HOH A 79 379 128 HOH HOH . J 3 HOH A 80 380 129 HOH HOH . J 3 HOH A 81 381 130 HOH HOH . J 3 HOH A 82 382 133 HOH HOH . J 3 HOH A 83 383 143 HOH HOH . J 3 HOH A 84 384 144 HOH HOH . J 3 HOH A 85 385 145 HOH HOH . J 3 HOH A 86 386 147 HOH HOH . J 3 HOH A 87 387 148 HOH HOH . J 3 HOH A 88 388 149 HOH HOH . J 3 HOH A 89 389 150 HOH HOH . J 3 HOH A 90 390 151 HOH HOH . J 3 HOH A 91 391 152 HOH HOH . J 3 HOH A 92 392 153 HOH HOH . J 3 HOH A 93 393 154 HOH HOH . K 3 HOH B 1 301 1 HOH HOH . K 3 HOH B 2 302 3 HOH HOH . K 3 HOH B 3 303 5 HOH HOH . K 3 HOH B 4 304 9 HOH HOH . K 3 HOH B 5 305 11 HOH HOH . K 3 HOH B 6 306 17 HOH HOH . K 3 HOH B 7 307 20 HOH HOH . K 3 HOH B 8 308 21 HOH HOH . K 3 HOH B 9 309 24 HOH HOH . K 3 HOH B 10 310 35 HOH HOH . K 3 HOH B 11 311 36 HOH HOH . K 3 HOH B 12 312 40 HOH HOH . K 3 HOH B 13 313 41 HOH HOH . K 3 HOH B 14 314 42 HOH HOH . K 3 HOH B 15 315 43 HOH HOH . K 3 HOH B 16 316 49 HOH HOH . K 3 HOH B 17 317 51 HOH HOH . K 3 HOH B 18 318 52 HOH HOH . K 3 HOH B 19 319 56 HOH HOH . K 3 HOH B 20 320 57 HOH HOH . K 3 HOH B 21 321 61 HOH HOH . K 3 HOH B 22 322 62 HOH HOH . K 3 HOH B 23 323 63 HOH HOH . K 3 HOH B 24 324 64 HOH HOH . K 3 HOH B 25 325 66 HOH HOH . K 3 HOH B 26 326 67 HOH HOH . K 3 HOH B 27 327 69 HOH HOH . K 3 HOH B 28 328 71 HOH HOH . K 3 HOH B 29 329 73 HOH HOH . K 3 HOH B 30 330 74 HOH HOH . K 3 HOH B 31 331 77 HOH HOH . K 3 HOH B 32 332 78 HOH HOH . K 3 HOH B 33 333 79 HOH HOH . K 3 HOH B 34 334 80 HOH HOH . K 3 HOH B 35 335 82 HOH HOH . K 3 HOH B 36 336 85 HOH HOH . K 3 HOH B 37 337 88 HOH HOH . K 3 HOH B 38 338 98 HOH HOH . K 3 HOH B 39 339 101 HOH HOH . K 3 HOH B 40 340 102 HOH HOH . K 3 HOH B 41 341 104 HOH HOH . K 3 HOH B 42 342 107 HOH HOH . K 3 HOH B 43 343 108 HOH HOH . K 3 HOH B 44 344 114 HOH HOH . K 3 HOH B 45 345 115 HOH HOH . K 3 HOH B 46 346 119 HOH HOH . K 3 HOH B 47 347 120 HOH HOH . K 3 HOH B 48 348 124 HOH HOH . K 3 HOH B 49 349 125 HOH HOH . K 3 HOH B 50 350 131 HOH HOH . K 3 HOH B 51 351 132 HOH HOH . K 3 HOH B 52 352 134 HOH HOH . K 3 HOH B 53 353 135 HOH HOH . K 3 HOH B 54 354 136 HOH HOH . K 3 HOH B 55 355 137 HOH HOH . K 3 HOH B 56 356 138 HOH HOH . K 3 HOH B 57 357 139 HOH HOH . K 3 HOH B 58 358 140 HOH HOH . K 3 HOH B 59 359 141 HOH HOH . K 3 HOH B 60 360 142 HOH HOH . K 3 HOH B 61 361 146 HOH HOH . K 3 HOH B 62 362 155 HOH HOH . K 3 HOH B 63 363 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 -26.149 18.007 46.388 1 57.23 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . F 2 -25.28 16.943 46.815 1 61.82 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . F 2 -27.356 17.389 45.687 1 56.3 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . F 2 -27.995 18.284 44.75 1 58.02 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #