data_4DHV # _model_server_result.job_id yW93N7WblLb1-rXd--bvaw _model_server_result.datetime_utc '2025-02-05 18:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":103}' # _entry.id 4DHV # _exptl.entry_id 4DHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DHV _cell.length_a 45.11 _cell.length_b 49.33 _cell.length_c 54.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 B CYS 21 1_555 A SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 B SG CYS 21 A CYS 21 1_555 B SG CYS 48 A CYS 48 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 B SG CYS 21 A CYS 21 1_555 B SG CYS 48 A CYS 48 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A SG CYS 11 B CYS 11 1_555 C FE2 0KA . B 0KA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 A SG CYS 14 B CYS 14 1_555 C AG1 0KA . B 0KA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A SG CYS 17 B CYS 17 1_555 C FE3 0KA . B 0KA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A SG CYS 56 B CYS 56 1_555 C FE1 0KA . B 0KA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 B SG CYS 11 A CYS 11 1_555 F FE2 0KA . A 0KA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 B SG CYS 14 A CYS 14 1_555 F AG1 0KA . A 0KA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 B SG CYS 17 A CYS 17 1_555 F FE3 0KA . A 0KA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc8 B SG CYS 56 A CYS 56 1_555 F FE1 0KA . A 0KA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 202 n n CO N2 NCO sing 203 n n CO N3 NCO sing 204 n n CO N4 NCO sing 205 n n CO N5 NCO sing 206 n n CO N6 NCO sing 207 n n N1 HN11 NCO sing 208 n n N1 HN12 NCO sing 209 n n N1 HN13 NCO sing 210 n n N2 HN21 NCO sing 211 n n N2 HN22 NCO sing 212 n n N2 HN23 NCO sing 213 n n N3 HN31 NCO sing 214 n n N3 HN32 NCO sing 215 n n N3 HN33 NCO sing 216 n n N4 HN41 NCO sing 217 n n N4 HN42 NCO sing 218 n n N4 HN43 NCO sing 219 n n N5 HN51 NCO sing 220 n n N5 HN52 NCO sing 221 n n N5 HN53 NCO sing 222 n n N6 HN61 NCO sing 223 n n N6 HN62 NCO sing 224 n n N6 HN63 NCO sing 225 n n # _atom_sites.entry_id 4DHV _atom_sites.fract_transf_matrix[1][1] 0.022168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0KA B 1 101 70 0KA 0KA . D 3 NCO B 1 102 71 NCO NCO . E 3 NCO A 1 101 72 NCO NCO . F 2 0KA A 1 102 70 0KA 0KA . G 3 NCO A 1 103 73 NCO NCO . H 3 NCO A 1 104 74 NCO NCO . I 4 HOH B 1 201 1 HOH HOH . I 4 HOH B 2 202 6 HOH HOH . I 4 HOH B 3 203 8 HOH HOH . I 4 HOH B 4 204 13 HOH HOH . I 4 HOH B 5 205 17 HOH HOH . I 4 HOH B 6 206 24 HOH HOH . I 4 HOH B 7 207 25 HOH HOH . I 4 HOH B 8 208 26 HOH HOH . I 4 HOH B 9 209 27 HOH HOH . I 4 HOH B 10 210 30 HOH HOH . I 4 HOH B 11 211 32 HOH HOH . I 4 HOH B 12 212 33 HOH HOH . I 4 HOH B 13 213 34 HOH HOH . I 4 HOH B 14 214 35 HOH HOH . I 4 HOH B 15 215 36 HOH HOH . I 4 HOH B 16 216 39 HOH HOH . I 4 HOH B 17 217 40 HOH HOH . I 4 HOH B 18 218 41 HOH HOH . I 4 HOH B 19 219 42 HOH HOH . I 4 HOH B 20 220 43 HOH HOH . I 4 HOH B 21 221 44 HOH HOH . I 4 HOH B 22 222 45 HOH HOH . I 4 HOH B 23 223 48 HOH HOH . I 4 HOH B 24 224 49 HOH HOH . I 4 HOH B 25 225 50 HOH HOH . I 4 HOH B 26 226 51 HOH HOH . I 4 HOH B 27 227 53 HOH HOH . I 4 HOH B 28 228 56 HOH HOH . I 4 HOH B 29 229 60 HOH HOH . I 4 HOH B 30 230 62 HOH HOH . I 4 HOH B 31 231 65 HOH HOH . I 4 HOH B 32 232 66 HOH HOH . I 4 HOH B 33 233 67 HOH HOH . I 4 HOH B 34 234 69 HOH HOH . I 4 HOH B 35 235 74 HOH HOH . I 4 HOH B 36 236 75 HOH HOH . I 4 HOH B 37 237 76 HOH HOH . I 4 HOH B 38 238 81 HOH HOH . I 4 HOH B 39 239 84 HOH HOH . I 4 HOH B 40 240 85 HOH HOH . I 4 HOH B 41 241 86 HOH HOH . I 4 HOH B 42 242 88 HOH HOH . I 4 HOH B 43 243 89 HOH HOH . I 4 HOH B 44 244 90 HOH HOH . I 4 HOH B 45 245 91 HOH HOH . I 4 HOH B 46 246 93 HOH HOH . I 4 HOH B 47 247 94 HOH HOH . I 4 HOH B 48 248 96 HOH HOH . I 4 HOH B 49 249 98 HOH HOH . I 4 HOH B 50 250 99 HOH HOH . I 4 HOH B 51 251 100 HOH HOH . I 4 HOH B 52 252 102 HOH HOH . I 4 HOH B 53 253 103 HOH HOH . J 4 HOH A 1 201 2 HOH HOH . J 4 HOH A 2 202 3 HOH HOH . J 4 HOH A 3 203 4 HOH HOH . J 4 HOH A 4 204 5 HOH HOH . J 4 HOH A 5 205 7 HOH HOH . J 4 HOH A 6 206 9 HOH HOH . J 4 HOH A 7 207 10 HOH HOH . J 4 HOH A 8 208 11 HOH HOH . J 4 HOH A 9 209 12 HOH HOH . J 4 HOH A 10 210 14 HOH HOH . J 4 HOH A 11 211 15 HOH HOH . J 4 HOH A 12 212 16 HOH HOH . J 4 HOH A 13 213 18 HOH HOH . J 4 HOH A 14 214 20 HOH HOH . J 4 HOH A 15 215 22 HOH HOH . J 4 HOH A 16 216 23 HOH HOH . J 4 HOH A 17 217 28 HOH HOH . J 4 HOH A 18 218 29 HOH HOH . J 4 HOH A 19 219 31 HOH HOH . J 4 HOH A 20 220 37 HOH HOH . J 4 HOH A 21 221 38 HOH HOH . J 4 HOH A 22 222 47 HOH HOH . J 4 HOH A 23 223 54 HOH HOH . J 4 HOH A 24 224 55 HOH HOH . J 4 HOH A 25 225 57 HOH HOH . J 4 HOH A 26 226 58 HOH HOH . J 4 HOH A 27 227 59 HOH HOH . J 4 HOH A 28 228 61 HOH HOH . J 4 HOH A 29 229 63 HOH HOH . J 4 HOH A 30 230 64 HOH HOH . J 4 HOH A 31 231 68 HOH HOH . J 4 HOH A 32 232 70 HOH HOH . J 4 HOH A 33 233 71 HOH HOH . J 4 HOH A 34 234 72 HOH HOH . J 4 HOH A 35 235 77 HOH HOH . J 4 HOH A 36 236 78 HOH HOH . J 4 HOH A 37 237 79 HOH HOH . J 4 HOH A 38 238 80 HOH HOH . J 4 HOH A 39 239 82 HOH HOH . J 4 HOH A 40 240 83 HOH HOH . J 4 HOH A 41 241 87 HOH HOH . J 4 HOH A 42 242 92 HOH HOH . J 4 HOH A 43 243 95 HOH HOH . J 4 HOH A 44 244 97 HOH HOH . J 4 HOH A 45 245 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . G 3 9.931 16.469 23.774 1 30.16 ? CO NCO 103 A 1 HETATM 2 N N1 NCO . . . G 3 11.467 16.584 24.994 1 21.67 ? N1 NCO 103 A 1 HETATM 3 N N2 NCO . . . G 3 8.281 15.949 22.602 1 21.37 ? N2 NCO 103 A 1 HETATM 4 N N3 NCO . . . G 3 10.719 13.956 23.186 1 18.52 ? N3 NCO 103 A 1 HETATM 5 N N4 NCO . . . G 3 9.759 18.228 23.49 1 9.45 ? N4 NCO 103 A 1 HETATM 6 N N5 NCO . . . G 3 8.417 15.665 25.509 1 29.68 ? N5 NCO 103 A 1 HETATM 7 N N6 NCO . . . G 3 11.034 17.399 22.136 1 10.99 ? N6 NCO 103 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #