data_4DI0
#
_model_server_result.job_id            CxVJwoxtLF9QC6pa91GdFw 
_model_server_result.datetime_utc      '2025-07-30 19:49:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4di0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":204}' 
#
_entry.id    4DI0 
#
_exptl.entry_id    4DI0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DI0 
_cell.length_a            50.58 
_cell.length_b            56.47 
_cell.length_c            99.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DI0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 24 A GLU 20 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc2 A OE1 GLU 24 A GLU 20 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc3 A OE2 GLU 57 A GLU 53 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc4 A ND1 HIS 60 A HIS 56 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc5 A OE2 GLU 128 A GLU 124 1_555 G FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc6 C FE FE . A FE 201 1_555 K O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc7 C FE FE . A FE 201 1_555 B OE2 GLU 128 B GLU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc8 B OE1 GLU 24 B GLU 20 1_555 G FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc9 B OE2 GLU 24 B GLU 20 1_555 G FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc10 B OE2 GLU 57 B GLU 53 1_555 G FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc11 B ND1 HIS 60 B HIS 56 1_555 G FE FE . B FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc12 B OE2 GLU 94 B GLU 90 1_555 H FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc13 B OE1 GLU 94 B GLU 90 1_555 H FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc14 B OE1 GLU 128 B GLU 124 1_555 H FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
metalc ? metalc15 B ND1 HIS 131 B HIS 127 1_555 H FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     4DI0 
_atom_sites.fract_transf_matrix[1][1]    0.019771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 201 2 FE Fe . 
D 3 EDO A 1 202 1 EDO EDO . 
E 3 EDO A 1 203 1 EDO EDO . 
F 3 EDO A 1 204 1 EDO EDO . 
G 2 FE B 1 201 1 FE Fe . 
H 2 FE B 1 202 3 FE Fe . 
I 4 GOL B 1 203 1 GOL GOL . 
J 3 EDO B 1 204 1 EDO EDO . 
K 5 HOH A 1 301 1 HOH HOH . 
K 5 HOH A 2 302 2 HOH HOH . 
K 5 HOH A 3 303 3 HOH HOH . 
K 5 HOH A 4 304 5 HOH HOH . 
K 5 HOH A 5 305 7 HOH HOH . 
K 5 HOH A 6 306 9 HOH HOH . 
K 5 HOH A 7 307 10 HOH HOH . 
K 5 HOH A 8 308 15 HOH HOH . 
K 5 HOH A 9 309 16 HOH HOH . 
K 5 HOH A 10 310 19 HOH HOH . 
K 5 HOH A 11 311 21 HOH HOH . 
K 5 HOH A 12 312 22 HOH HOH . 
K 5 HOH A 13 313 24 HOH HOH . 
K 5 HOH A 14 314 25 HOH HOH . 
K 5 HOH A 15 315 26 HOH HOH . 
K 5 HOH A 16 316 27 HOH HOH . 
K 5 HOH A 17 317 28 HOH HOH . 
K 5 HOH A 18 318 30 HOH HOH . 
K 5 HOH A 19 319 32 HOH HOH . 
K 5 HOH A 20 320 33 HOH HOH . 
K 5 HOH A 21 321 37 HOH HOH . 
K 5 HOH A 22 322 42 HOH HOH . 
K 5 HOH A 23 323 46 HOH HOH . 
K 5 HOH A 24 324 47 HOH HOH . 
K 5 HOH A 25 325 49 HOH HOH . 
K 5 HOH A 26 326 50 HOH HOH . 
K 5 HOH A 27 327 51 HOH HOH . 
K 5 HOH A 28 328 52 HOH HOH . 
K 5 HOH A 29 329 56 HOH HOH . 
K 5 HOH A 30 330 60 HOH HOH . 
K 5 HOH A 31 331 61 HOH HOH . 
K 5 HOH A 32 332 64 HOH HOH . 
K 5 HOH A 33 333 65 HOH HOH . 
K 5 HOH A 34 334 66 HOH HOH . 
K 5 HOH A 35 335 70 HOH HOH . 
K 5 HOH A 36 336 71 HOH HOH . 
K 5 HOH A 37 337 72 HOH HOH . 
K 5 HOH A 38 338 73 HOH HOH . 
K 5 HOH A 39 339 74 HOH HOH . 
K 5 HOH A 40 340 75 HOH HOH . 
K 5 HOH A 41 341 76 HOH HOH . 
K 5 HOH A 42 342 78 HOH HOH . 
K 5 HOH A 43 343 79 HOH HOH . 
K 5 HOH A 44 344 80 HOH HOH . 
K 5 HOH A 45 345 81 HOH HOH . 
K 5 HOH A 46 346 84 HOH HOH . 
K 5 HOH A 47 347 88 HOH HOH . 
K 5 HOH A 48 348 89 HOH HOH . 
K 5 HOH A 49 349 92 HOH HOH . 
K 5 HOH A 50 350 98 HOH HOH . 
K 5 HOH A 51 351 100 HOH HOH . 
K 5 HOH A 52 352 102 HOH HOH . 
K 5 HOH A 53 353 105 HOH HOH . 
K 5 HOH A 54 354 107 HOH HOH . 
K 5 HOH A 55 355 109 HOH HOH . 
K 5 HOH A 56 356 112 HOH HOH . 
K 5 HOH A 57 357 116 HOH HOH . 
K 5 HOH A 58 358 120 HOH HOH . 
K 5 HOH A 59 359 126 HOH HOH . 
K 5 HOH A 60 360 131 HOH HOH . 
K 5 HOH A 61 361 132 HOH HOH . 
K 5 HOH A 62 362 135 HOH HOH . 
K 5 HOH A 63 363 138 HOH HOH . 
K 5 HOH A 64 364 140 HOH HOH . 
K 5 HOH A 65 365 141 HOH HOH . 
K 5 HOH A 66 366 145 HOH HOH . 
K 5 HOH A 67 367 149 HOH HOH . 
K 5 HOH A 68 368 150 HOH HOH . 
K 5 HOH A 69 369 155 HOH HOH . 
K 5 HOH A 70 370 161 HOH HOH . 
K 5 HOH A 71 371 165 HOH HOH . 
K 5 HOH A 72 372 166 HOH HOH . 
K 5 HOH A 73 373 171 HOH HOH . 
K 5 HOH A 74 374 173 HOH HOH . 
K 5 HOH A 75 375 177 HOH HOH . 
K 5 HOH A 76 376 183 HOH HOH . 
K 5 HOH A 77 377 185 HOH HOH . 
K 5 HOH A 78 378 186 HOH HOH . 
K 5 HOH A 79 379 191 HOH HOH . 
K 5 HOH A 80 380 195 HOH HOH . 
K 5 HOH A 81 381 197 HOH HOH . 
K 5 HOH A 82 382 200 HOH HOH . 
K 5 HOH A 83 383 201 HOH HOH . 
K 5 HOH A 84 384 202 HOH HOH . 
K 5 HOH A 85 385 203 HOH HOH . 
K 5 HOH A 86 386 210 HOH HOH . 
K 5 HOH A 87 387 214 HOH HOH . 
K 5 HOH A 88 388 216 HOH HOH . 
K 5 HOH A 89 389 217 HOH HOH . 
K 5 HOH A 90 390 219 HOH HOH . 
K 5 HOH A 91 391 220 HOH HOH . 
K 5 HOH A 92 392 222 HOH HOH . 
K 5 HOH A 93 393 223 HOH HOH . 
K 5 HOH A 94 394 226 HOH HOH . 
K 5 HOH A 95 395 227 HOH HOH . 
K 5 HOH A 96 396 231 HOH HOH . 
K 5 HOH A 97 397 232 HOH HOH . 
K 5 HOH A 98 398 234 HOH HOH . 
K 5 HOH A 99 399 235 HOH HOH . 
K 5 HOH A 100 400 236 HOH HOH . 
K 5 HOH A 101 401 237 HOH HOH . 
K 5 HOH A 102 402 238 HOH HOH . 
K 5 HOH A 103 403 239 HOH HOH . 
K 5 HOH A 104 404 240 HOH HOH . 
K 5 HOH A 105 405 241 HOH HOH . 
L 5 HOH B 1 301 8 HOH HOH . 
L 5 HOH B 2 302 11 HOH HOH . 
L 5 HOH B 3 303 12 HOH HOH . 
L 5 HOH B 4 304 13 HOH HOH . 
L 5 HOH B 5 305 14 HOH HOH . 
L 5 HOH B 6 306 17 HOH HOH . 
L 5 HOH B 7 307 18 HOH HOH . 
L 5 HOH B 8 308 23 HOH HOH . 
L 5 HOH B 9 309 31 HOH HOH . 
L 5 HOH B 10 310 34 HOH HOH . 
L 5 HOH B 11 311 36 HOH HOH . 
L 5 HOH B 12 312 38 HOH HOH . 
L 5 HOH B 13 313 40 HOH HOH . 
L 5 HOH B 14 314 41 HOH HOH . 
L 5 HOH B 15 315 43 HOH HOH . 
L 5 HOH B 16 316 44 HOH HOH . 
L 5 HOH B 17 317 54 HOH HOH . 
L 5 HOH B 18 318 55 HOH HOH . 
L 5 HOH B 19 319 58 HOH HOH . 
L 5 HOH B 20 320 59 HOH HOH . 
L 5 HOH B 21 321 69 HOH HOH . 
L 5 HOH B 22 322 77 HOH HOH . 
L 5 HOH B 23 323 82 HOH HOH . 
L 5 HOH B 24 324 83 HOH HOH . 
L 5 HOH B 25 325 87 HOH HOH . 
L 5 HOH B 26 326 93 HOH HOH . 
L 5 HOH B 27 327 94 HOH HOH . 
L 5 HOH B 28 328 95 HOH HOH . 
L 5 HOH B 29 329 97 HOH HOH . 
L 5 HOH B 30 330 101 HOH HOH . 
L 5 HOH B 31 331 103 HOH HOH . 
L 5 HOH B 32 332 106 HOH HOH . 
L 5 HOH B 33 333 108 HOH HOH . 
L 5 HOH B 34 334 113 HOH HOH . 
L 5 HOH B 35 335 114 HOH HOH . 
L 5 HOH B 36 336 121 HOH HOH . 
L 5 HOH B 37 337 122 HOH HOH . 
L 5 HOH B 38 338 125 HOH HOH . 
L 5 HOH B 39 339 127 HOH HOH . 
L 5 HOH B 40 340 129 HOH HOH . 
L 5 HOH B 41 341 130 HOH HOH . 
L 5 HOH B 42 342 133 HOH HOH . 
L 5 HOH B 43 343 142 HOH HOH . 
L 5 HOH B 44 344 143 HOH HOH . 
L 5 HOH B 45 345 146 HOH HOH . 
L 5 HOH B 46 346 147 HOH HOH . 
L 5 HOH B 47 347 148 HOH HOH . 
L 5 HOH B 48 348 151 HOH HOH . 
L 5 HOH B 49 349 153 HOH HOH . 
L 5 HOH B 50 350 154 HOH HOH . 
L 5 HOH B 51 351 156 HOH HOH . 
L 5 HOH B 52 352 157 HOH HOH . 
L 5 HOH B 53 353 159 HOH HOH . 
L 5 HOH B 54 354 160 HOH HOH . 
L 5 HOH B 55 355 163 HOH HOH . 
L 5 HOH B 56 356 164 HOH HOH . 
L 5 HOH B 57 357 167 HOH HOH . 
L 5 HOH B 58 358 168 HOH HOH . 
L 5 HOH B 59 359 169 HOH HOH . 
L 5 HOH B 60 360 170 HOH HOH . 
L 5 HOH B 61 361 172 HOH HOH . 
L 5 HOH B 62 362 179 HOH HOH . 
L 5 HOH B 63 363 187 HOH HOH . 
L 5 HOH B 64 364 196 HOH HOH . 
L 5 HOH B 65 365 198 HOH HOH . 
L 5 HOH B 66 366 199 HOH HOH . 
L 5 HOH B 67 367 205 HOH HOH . 
L 5 HOH B 68 368 207 HOH HOH . 
L 5 HOH B 69 369 209 HOH HOH . 
L 5 HOH B 70 370 212 HOH HOH . 
L 5 HOH B 71 371 213 HOH HOH . 
L 5 HOH B 72 372 218 HOH HOH . 
L 5 HOH B 73 373 221 HOH HOH . 
L 5 HOH B 74 374 224 HOH HOH . 
L 5 HOH B 75 375 225 HOH HOH . 
L 5 HOH B 76 376 228 HOH HOH . 
L 5 HOH B 77 377 229 HOH HOH . 
L 5 HOH B 78 378 230 HOH HOH . 
L 5 HOH B 79 379 233 HOH HOH . 
L 5 HOH B 80 380 242 HOH HOH . 
L 5 HOH B 81 381 243 HOH HOH . 
L 5 HOH B 82 382 244 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 49.572 54.952 17.939 1 32.45 ? C1 EDO 204 A 1 
HETATM 2 O O1 EDO . . . F 3 49.167 55.397 19.215 1 33.69 ? O1 EDO 204 A 1 
HETATM 3 C C2 EDO . . . F 3 48.301 54.845 17.101 1 31.61 ? C2 EDO 204 A 1 
HETATM 4 O O2 EDO . . . F 3 47.668 53.61 17.354 1 34.7 ? O2 EDO 204 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#