data_4DI4 # _model_server_result.job_id Mkv1qfQfS6DnxE2eavWvaA _model_server_result.datetime_utc '2024-11-05 00:52:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4di4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4DI4 # _exptl.entry_id 4DI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4DI4 _cell.length_a 172.879 _cell.length_b 172.879 _cell.length_c 150.718 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 267 n n C1 C2 PGE sing 268 n n C1 H1 PGE sing 269 n n C1 H12 PGE sing 270 n n O1 HO1 PGE sing 271 n n C2 O2 PGE sing 272 n n C2 H2 PGE sing 273 n n C2 H22 PGE sing 274 n n O2 C3 PGE sing 275 n n C3 C4 PGE sing 276 n n C3 H3 PGE sing 277 n n C3 H32 PGE sing 278 n n C4 O3 PGE sing 279 n n C4 H4 PGE sing 280 n n C4 H42 PGE sing 281 n n O4 C6 PGE sing 282 n n O4 HO4 PGE sing 283 n n C6 C5 PGE sing 284 n n C6 H6 PGE sing 285 n n C6 H62 PGE sing 286 n n C5 O3 PGE sing 287 n n C5 H5 PGE sing 288 n n C5 H52 PGE sing 289 n n # _atom_sites.entry_id 4DI4 _atom_sites.fract_transf_matrix[1][1] 0.005784 _atom_sites.fract_transf_matrix[1][2] 0.00334 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE A 1 401 6119 PGE PGE . D 4 PG4 A 1 402 6112 PG4 PG4 . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 10 HOH HOH . E 5 HOH A 6 506 12 HOH HOH . E 5 HOH A 7 507 14 HOH HOH . E 5 HOH A 8 508 15 HOH HOH . F 5 HOH B 1 401 8 HOH HOH . F 5 HOH B 2 402 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . C 3 -40.655 -3.832 46.533 1 91.51 ? C1 PGE 401 A 1 HETATM 2 O O1 PGE . . . C 3 -41.948 -3.479 46.876 1 89.83 ? O1 PGE 401 A 1 HETATM 3 C C2 PGE . . . C 3 -40.271 -3.719 45.096 1 96.49 ? C2 PGE 401 A 1 HETATM 4 O O2 PGE . . . C 3 -39.001 -3.274 44.799 1 94.09 ? O2 PGE 401 A 1 HETATM 5 C C3 PGE . . . C 3 -38.827 -2.045 44.199 1 85.02 ? C3 PGE 401 A 1 HETATM 6 C C4 PGE . . . C 3 -37.875 -1.092 44.843 1 81.36 ? C4 PGE 401 A 1 HETATM 7 O O4 PGE . . . C 3 -39.528 2.338 46.805 1 74.59 ? O4 PGE 401 A 1 HETATM 8 C C6 PGE . . . C 3 -38.285 1.837 47.161 1 67.82 ? C6 PGE 401 A 1 HETATM 9 C C5 PGE . . . C 3 -37.626 0.809 46.294 1 70.57 ? C5 PGE 401 A 1 HETATM 10 O O3 PGE . . . C 3 -38.385 -0.244 45.81 1 86.27 ? O3 PGE 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #