data_4DID # _model_server_result.job_id 40hCXJjMRSaiGUqHy6LRhA _model_server_result.datetime_utc '2024-11-26 01:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4did # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4DID # _exptl.entry_id 4DID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DID _cell.length_a 106.88 _cell.length_b 106.88 _cell.length_c 87.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DID _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 27 A THR 17 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 A O THR 45 A THR 35 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 C O2B GDP . A GDP 200 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc4 D MG MG . A MG 201 1_555 E O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 D MG MG . A MG 201 1_555 E O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 D MG MG . A MG 201 1_555 E O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4DID _atom_sites.fract_transf_matrix[1][1] 0.009356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 200 200 GDP GDP . D 4 MG A 1 201 201 MG MG . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 7 HOH HOH . E 5 HOH A 7 307 9 HOH HOH . E 5 HOH A 8 308 11 HOH HOH . E 5 HOH A 9 309 12 HOH HOH . E 5 HOH A 10 310 14 HOH HOH . E 5 HOH A 11 311 15 HOH HOH . E 5 HOH A 12 312 16 HOH HOH . E 5 HOH A 13 313 20 HOH HOH . E 5 HOH A 14 314 21 HOH HOH . E 5 HOH A 15 315 22 HOH HOH . E 5 HOH A 16 316 23 HOH HOH . E 5 HOH A 17 317 25 HOH HOH . E 5 HOH A 18 318 26 HOH HOH . E 5 HOH A 19 319 28 HOH HOH . E 5 HOH A 20 320 29 HOH HOH . E 5 HOH A 21 321 31 HOH HOH . E 5 HOH A 22 322 32 HOH HOH . E 5 HOH A 23 323 33 HOH HOH . E 5 HOH A 24 324 34 HOH HOH . E 5 HOH A 25 325 36 HOH HOH . E 5 HOH A 26 326 37 HOH HOH . E 5 HOH A 27 327 38 HOH HOH . E 5 HOH A 28 328 39 HOH HOH . E 5 HOH A 29 329 40 HOH HOH . E 5 HOH A 30 330 42 HOH HOH . E 5 HOH A 31 331 43 HOH HOH . E 5 HOH A 32 332 45 HOH HOH . E 5 HOH A 33 333 46 HOH HOH . E 5 HOH A 34 334 47 HOH HOH . E 5 HOH A 35 335 48 HOH HOH . E 5 HOH A 36 336 53 HOH HOH . E 5 HOH A 37 337 54 HOH HOH . E 5 HOH A 38 338 57 HOH HOH . E 5 HOH A 39 339 58 HOH HOH . E 5 HOH A 40 340 63 HOH HOH . E 5 HOH A 41 341 64 HOH HOH . E 5 HOH A 42 342 66 HOH HOH . E 5 HOH A 43 343 70 HOH HOH . F 5 HOH B 1 201 6 HOH HOH . F 5 HOH B 2 202 8 HOH HOH . F 5 HOH B 3 203 10 HOH HOH . F 5 HOH B 4 204 13 HOH HOH . F 5 HOH B 5 205 17 HOH HOH . F 5 HOH B 6 206 18 HOH HOH . F 5 HOH B 7 207 19 HOH HOH . F 5 HOH B 8 208 24 HOH HOH . F 5 HOH B 9 209 27 HOH HOH . F 5 HOH B 10 210 30 HOH HOH . F 5 HOH B 11 211 35 HOH HOH . F 5 HOH B 12 212 41 HOH HOH . F 5 HOH B 13 213 44 HOH HOH . F 5 HOH B 14 214 49 HOH HOH . F 5 HOH B 15 215 50 HOH HOH . F 5 HOH B 16 216 51 HOH HOH . F 5 HOH B 17 217 52 HOH HOH . F 5 HOH B 18 218 55 HOH HOH . F 5 HOH B 19 219 56 HOH HOH . F 5 HOH B 20 220 59 HOH HOH . F 5 HOH B 21 221 60 HOH HOH . F 5 HOH B 22 222 61 HOH HOH . F 5 HOH B 23 223 62 HOH HOH . F 5 HOH B 24 224 65 HOH HOH . F 5 HOH B 25 225 67 HOH HOH . F 5 HOH B 26 226 68 HOH HOH . F 5 HOH B 27 227 69 HOH HOH . F 5 HOH B 28 228 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 29.026 _atom_site.Cartn_y -15.348 _atom_site.Cartn_z 8.512 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #