data_4DJE # _model_server_result.job_id cZUpBk8j-5jCd17nxtiNxA _model_server_result.datetime_utc '2024-11-28 19:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4dje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":300}' # _entry.id 4DJE # _exptl.entry_id 4DJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.456 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DJE _cell.length_a 136.419 _cell.length_b 250.664 _cell.length_c 82.427 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SG CYS 17 C CYS 17 1_555 K FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 C SG CYS 20 C CYS 20 1_555 K FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 C SG CYS 25 C CYS 25 1_555 K FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 C SG CYS 42 C CYS 42 1_555 K FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 E SG CYS 17 E CYS 17 1_555 M FE2 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 E SG CYS 20 E CYS 20 1_555 M FE1 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 E SG CYS 25 E CYS 25 1_555 M FE4 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 E SG CYS 42 E CYS 42 1_555 M FE3 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'C20 H25 N7 O6' _chem_comp.formula_weight 459.456 _chem_comp.id C2F _chem_comp.mon_nstd_flag . _chem_comp.name '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 C2F doub 260 n y N1 C8A C2F sing 261 n y C2 NA2 C2F sing 262 n n C2 N3 C2F sing 263 n y NA2 HN21 C2F sing 264 n n NA2 HN22 C2F sing 265 n n N3 C4 C2F sing 266 n y N3 HN3 C2F sing 267 n n C4 O4 C2F doub 268 n n C4 C4A C2F sing 269 n y C4A N5 C2F sing 270 n n C4A C8A C2F doub 271 n y N5 C6 C2F sing 272 n n N5 C11 C2F sing 273 n n C6 C7 C2F sing 274 n n C6 C9 C2F sing 275 n n C6 H6 C2F sing 276 n n C7 N8 C2F sing 277 n n C7 H71 C2F sing 278 n n C7 H72 C2F sing 279 n n N8 C8A C2F sing 280 n n N8 HN8 C2F sing 281 n n C9 N10 C2F sing 282 n n C9 H91 C2F sing 283 n n C9 H92 C2F sing 284 n n N10 C15 C2F sing 285 n n N10 HN1 C2F sing 286 n n C11 H111 C2F sing 287 n n C11 H112 C2F sing 288 n n C11 H113 C2F sing 289 n n C12 C13 C2F doub 290 n y C12 C17 C2F sing 291 n y C12 C C2F sing 292 n n C13 C14 C2F sing 293 n y C13 H13 C2F sing 294 n n C14 C15 C2F doub 295 n y C14 H14 C2F sing 296 n n C15 C16 C2F sing 297 n y C16 C17 C2F doub 298 n y C16 H16 C2F sing 299 n n C17 H17 C2F sing 300 n n C O C2F doub 301 n n C N C2F sing 302 n n N CA C2F sing 303 n n N HN C2F sing 304 n n CA CB C2F sing 305 n n CA CT C2F sing 306 n n CA HA C2F sing 307 n n CB CG C2F sing 308 n n CB HB1 C2F sing 309 n n CB HB2 C2F sing 310 n n CG CD C2F sing 311 n n CG HG1 C2F sing 312 n n CG HG2 C2F sing 313 n n CD OE1 C2F doub 314 n n CD OE2 C2F sing 315 n n OE2 HOE2 C2F sing 316 n n CT O1 C2F doub 317 n n CT O2 C2F sing 318 n n O2 HO2 C2F sing 319 n n # _atom_sites.entry_id 4DJE _atom_sites.fract_transf_matrix[1][1] 0.00733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 C2F A 1 300 300 C2F C2F . H 5 CA A 1 301 301 CA CA . I 5 CA B 1 301 301 CA CA . J 4 C2F B 1 302 300 C2F C2F . K 6 SF4 C 1 501 500 SF4 SF4 . L 7 B12 C 1 502 600 B12 B12 . M 6 SF4 E 1 501 500 SF4 SF4 . N 7 B12 E 1 502 600 B12 B12 . O 8 HOH A 1 401 3 HOH HOH . O 8 HOH A 2 402 5 HOH HOH . O 8 HOH A 3 403 6 HOH HOH . P 8 HOH B 1 401 1 HOH HOH . P 8 HOH B 2 402 2 HOH HOH . P 8 HOH B 3 403 4 HOH HOH . Q 8 HOH D 1 401 7 HOH HOH . Q 8 HOH D 2 402 8 HOH HOH . R 8 HOH E 1 601 9 HOH HOH . S 8 HOH F 1 401 10 HOH HOH . S 8 HOH F 2 402 11 HOH HOH . S 8 HOH F 3 403 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 C2F . . . G 4 3.969 51.897 -46.262 1 92.63 ? N1 C2F 300 A 1 HETATM 2 C C2 C2F . . . G 4 4.249 52.007 -44.958 1 92.63 ? C2 C2F 300 A 1 HETATM 3 N NA2 C2F . . . G 4 5.567 52.607 -44.533 1 92.63 ? NA2 C2F 300 A 1 HETATM 4 N N3 C2F . . . G 4 3.389 51.598 -44.016 1 92.63 ? N3 C2F 300 A 1 HETATM 5 C C4 C2F . . . G 4 2.206 51.058 -44.365 1 92.63 ? C4 C2F 300 A 1 HETATM 6 O O4 C2F . . . G 4 1.329 50.643 -43.381 1 92.63 ? O4 C2F 300 A 1 HETATM 7 C C4A C2F . . . G 4 1.876 50.923 -45.717 1 92.63 ? C4A C2F 300 A 1 HETATM 8 N N5 C2F . . . G 4 0.609 50.351 -46.086 1 92.63 ? N5 C2F 300 A 1 HETATM 9 C C6 C2F . . . G 4 0.245 50.552 -47.46 1 92.63 ? C6 C2F 300 A 1 HETATM 10 C C7 C2F . . . G 4 1.454 50.441 -48.43 1 92.63 ? C7 C2F 300 A 1 HETATM 11 N N8 C2F . . . G 4 2.558 51.275 -48.065 1 92.63 ? N8 C2F 300 A 1 HETATM 12 C C8A C2F . . . G 4 2.793 51.364 -46.666 1 92.63 ? C8A C2F 300 A 1 HETATM 13 C C9 C2F . . . G 4 -0.427 51.898 -47.606 1 92.63 ? C9 C2F 300 A 1 HETATM 14 N N10 C2F . . . G 4 -1.289 52.106 -48.729 1 92.63 ? N10 C2F 300 A 1 HETATM 15 C C11 C2F . . . G 4 0.65 48.868 -45.91 1 92.63 ? C11 C2F 300 A 1 HETATM 16 C C12 C2F . . . G 4 -5.23 50.511 -48.785 1 92.63 ? C12 C2F 300 A 1 HETATM 17 C C13 C2F . . . G 4 -4.553 50.729 -49.969 1 92.63 ? C13 C2F 300 A 1 HETATM 18 C C14 C2F . . . G 4 -3.265 51.25 -49.952 1 92.63 ? C14 C2F 300 A 1 HETATM 19 C C15 C2F . . . G 4 -2.656 51.553 -48.74 1 92.63 ? C15 C2F 300 A 1 HETATM 20 C C16 C2F . . . G 4 -3.336 51.335 -47.544 1 92.63 ? C16 C2F 300 A 1 HETATM 21 C C17 C2F . . . G 4 -4.623 50.814 -47.566 1 92.63 ? C17 C2F 300 A 1 HETATM 22 C C C2F . . . G 4 -6.608 49.953 -48.823 1 92.63 ? C C2F 300 A 1 HETATM 23 O O C2F . . . G 4 -7.319 50.035 -47.841 1 92.63 ? O C2F 300 A 1 HETATM 24 N N C2F . . . G 4 -7.077 49.321 -50.045 1 92.63 ? N C2F 300 A 1 HETATM 25 C CA C2F . . . G 4 -8.418 48.737 -50.198 1 92.63 ? CA C2F 300 A 1 HETATM 26 C CB C2F . . . G 4 -8.595 47.943 -51.496 1 92.63 ? CB C2F 300 A 1 HETATM 27 C CG C2F . . . G 4 -9.611 48.457 -52.527 1 92.63 ? CG C2F 300 A 1 HETATM 28 C CD C2F . . . G 4 -9.669 47.737 -53.863 1 92.63 ? CD C2F 300 A 1 HETATM 29 O OE1 C2F . . . G 4 -9.062 46.62 -54.015 1 92.63 ? OE1 C2F 300 A 1 HETATM 30 O OE2 C2F . . . G 4 -10.31 48.238 -54.819 1 92.63 ? OE2 C2F 300 A 1 HETATM 31 C CT C2F . . . G 4 -8.741 47.827 -49.055 1 92.63 ? CT C2F 300 A 1 HETATM 32 O O1 C2F . . . G 4 -7.814 47.178 -48.464 1 92.63 ? O1 C2F 300 A 1 HETATM 33 O O2 C2F . . . G 4 -9.935 47.697 -48.679 1 92.63 ? O2 C2F 300 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #