data_4DJE
#
_model_server_result.job_id            0NDWsarqksTmdCXlvXVpGA 
_model_server_result.datetime_utc      '2024-11-28 19:04:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dje 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    4DJE 
#
_exptl.entry_id    4DJE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.456 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DJE 
_cell.length_a            136.419 
_cell.length_b            250.664 
_cell.length_c            82.427 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DJE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C SG CYS 17 C CYS 17 1_555 K FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 C SG CYS 20 C CYS 20 1_555 K FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc3 C SG CYS 25 C CYS 25 1_555 K FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc4 C SG CYS 42 C CYS 42 1_555 K FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc5 E SG CYS 17 E CYS 17 1_555 M FE2 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc6 E SG CYS 20 E CYS 20 1_555 M FE1 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc7 E SG CYS 25 E CYS 25 1_555 M FE4 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc8 E SG CYS 42 E CYS 42 1_555 M FE3 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
#
_chem_comp.formula           'C20 H25 N7 O6' 
_chem_comp.formula_weight    459.456 
_chem_comp.id                C2F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 C2F doub 260 n y 
N1 C8A C2F sing 261 n y 
C2 NA2 C2F sing 262 n n 
C2 N3 C2F sing 263 n y 
NA2 HN21 C2F sing 264 n n 
NA2 HN22 C2F sing 265 n n 
N3 C4 C2F sing 266 n y 
N3 HN3 C2F sing 267 n n 
C4 O4 C2F doub 268 n n 
C4 C4A C2F sing 269 n y 
C4A N5 C2F sing 270 n n 
C4A C8A C2F doub 271 n y 
N5 C6 C2F sing 272 n n 
N5 C11 C2F sing 273 n n 
C6 C7 C2F sing 274 n n 
C6 C9 C2F sing 275 n n 
C6 H6 C2F sing 276 n n 
C7 N8 C2F sing 277 n n 
C7 H71 C2F sing 278 n n 
C7 H72 C2F sing 279 n n 
N8 C8A C2F sing 280 n n 
N8 HN8 C2F sing 281 n n 
C9 N10 C2F sing 282 n n 
C9 H91 C2F sing 283 n n 
C9 H92 C2F sing 284 n n 
N10 C15 C2F sing 285 n n 
N10 HN1 C2F sing 286 n n 
C11 H111 C2F sing 287 n n 
C11 H112 C2F sing 288 n n 
C11 H113 C2F sing 289 n n 
C12 C13 C2F doub 290 n y 
C12 C17 C2F sing 291 n y 
C12 C C2F sing 292 n n 
C13 C14 C2F sing 293 n y 
C13 H13 C2F sing 294 n n 
C14 C15 C2F doub 295 n y 
C14 H14 C2F sing 296 n n 
C15 C16 C2F sing 297 n y 
C16 C17 C2F doub 298 n y 
C16 H16 C2F sing 299 n n 
C17 H17 C2F sing 300 n n 
C O C2F doub 301 n n 
C N C2F sing 302 n n 
N CA C2F sing 303 n n 
N HN C2F sing 304 n n 
CA CB C2F sing 305 n n 
CA CT C2F sing 306 n n 
CA HA C2F sing 307 n n 
CB CG C2F sing 308 n n 
CB HB1 C2F sing 309 n n 
CB HB2 C2F sing 310 n n 
CG CD C2F sing 311 n n 
CG HG1 C2F sing 312 n n 
CG HG2 C2F sing 313 n n 
CD OE1 C2F doub 314 n n 
CD OE2 C2F sing 315 n n 
OE2 HOE2 C2F sing 316 n n 
CT O1 C2F doub 317 n n 
CT O2 C2F sing 318 n n 
O2 HO2 C2F sing 319 n n 
#
_atom_sites.entry_id                     4DJE 
_atom_sites.fract_transf_matrix[1][1]    0.00733 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003989 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 C2F A 1 300 300 C2F C2F . 
H 5 CA A 1 301 301 CA CA . 
I 5 CA B 1 301 301 CA CA . 
J 4 C2F B 1 302 300 C2F C2F . 
K 6 SF4 C 1 501 500 SF4 SF4 . 
L 7 B12 C 1 502 600 B12 B12 . 
M 6 SF4 E 1 501 500 SF4 SF4 . 
N 7 B12 E 1 502 600 B12 B12 . 
O 8 HOH A 1 401 3 HOH HOH . 
O 8 HOH A 2 402 5 HOH HOH . 
O 8 HOH A 3 403 6 HOH HOH . 
P 8 HOH B 1 401 1 HOH HOH . 
P 8 HOH B 2 402 2 HOH HOH . 
P 8 HOH B 3 403 4 HOH HOH . 
Q 8 HOH D 1 401 7 HOH HOH . 
Q 8 HOH D 2 402 8 HOH HOH . 
R 8 HOH E 1 601 9 HOH HOH . 
S 8 HOH F 1 401 10 HOH HOH . 
S 8 HOH F 2 402 11 HOH HOH . 
S 8 HOH F 3 403 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 C2F . . . J 4 -14.063 75.937 -17.503 1 103.07 ? N1 C2F 302 B 1 
HETATM 2 C C2 C2F . . . J 4 -12.739 75.79 -17.633 1 103.07 ? C2 C2F 302 B 1 
HETATM 3 N NA2 C2F . . . J 4 -11.977 75.011 -16.589 1 103.07 ? NA2 C2F 302 B 1 
HETATM 4 N N3 C2F . . . J 4 -12.071 76.315 -18.667 1 103.07 ? N3 C2F 302 B 1 
HETATM 5 C C4 C2F . . . J 4 -12.725 77.016 -19.613 1 103.07 ? C4 C2F 302 B 1 
HETATM 6 O O4 C2F . . . J 4 -12.017 77.549 -20.674 1 103.07 ? O4 C2F 302 B 1 
HETATM 7 C C4A C2F . . . J 4 -14.109 77.195 -19.513 1 103.07 ? C4A C2F 302 B 1 
HETATM 8 N N5 C2F . . . J 4 -14.809 77.94 -20.528 1 103.07 ? N5 C2F 302 B 1 
HETATM 9 C C6 C2F . . . J 4 -16.24 77.84 -20.468 1 103.07 ? C6 C2F 302 B 1 
HETATM 10 C C7 C2F . . . J 4 -16.789 77.768 -19.017 1 103.07 ? C7 C2F 302 B 1 
HETATM 11 N N8 C2F . . . J 4 -16.17 76.749 -18.227 1 103.07 ? N8 C2F 302 B 1 
HETATM 12 C C8A C2F . . . J 4 -14.768 76.628 -18.427 1 103.07 ? C8A C2F 302 B 1 
HETATM 13 C C9 C2F . . . J 4 -16.698 76.638 -21.261 1 103.07 ? C9 C2F 302 B 1 
HETATM 14 N N10 C2F . . . J 4 -18.019 76.666 -21.81 1 103.07 ? N10 C2F 302 B 1 
HETATM 15 C C11 C2F . . . J 4 -14.527 79.399 -20.372 1 103.07 ? C11 C2F 302 B 1 
HETATM 16 C C12 C2F . . . J 4 -18.873 78.895 -25.329 1 103.07 ? C12 C2F 302 B 1 
HETATM 17 C C13 C2F . . . J 4 -19.777 78.871 -24.285 1 103.07 ? C13 C2F 302 B 1 
HETATM 18 C C14 C2F . . . J 4 -19.5 78.144 -23.134 1 103.07 ? C14 C2F 302 B 1 
HETATM 19 C C15 C2F . . . J 4 -18.307 77.437 -23.033 1 103.07 ? C15 C2F 302 B 1 
HETATM 20 C C16 C2F . . . J 4 -17.392 77.459 -24.084 1 103.07 ? C16 C2F 302 B 1 
HETATM 21 C C17 C2F . . . J 4 -17.674 78.186 -25.234 1 103.07 ? C17 C2F 302 B 1 
HETATM 22 C C C2F . . . J 4 -19.194 79.682 -26.55 1 103.07 ? C C2F 302 B 1 
HETATM 23 O O C2F . . . J 4 -18.573 79.486 -27.576 1 103.07 ? O C2F 302 B 1 
HETATM 24 N N C2F . . . J 4 -20.254 80.675 -26.481 1 103.07 ? N C2F 302 B 1 
HETATM 25 C CA C2F . . . J 4 -20.667 81.515 -27.614 1 103.07 ? CA C2F 302 B 1 
HETATM 26 C CB C2F . . . J 4 -21.629 82.639 -27.218 1 103.07 ? CB C2F 302 B 1 
HETATM 27 C CG C2F . . . J 4 -23.078 82.568 -27.722 1 103.07 ? CG C2F 302 B 1 
HETATM 28 C CD C2F . . . J 4 -23.998 83.718 -27.348 1 103.07 ? CD C2F 302 B 1 
HETATM 29 O OE1 C2F . . . J 4 -23.506 84.804 -26.881 1 103.07 ? OE1 C2F 302 B 1 
HETATM 30 O OE2 C2F . . . J 4 -25.24 83.601 -27.495 1 103.07 ? OE2 C2F 302 B 1 
HETATM 31 C CT C2F . . . J 4 -19.482 82.145 -28.276 1 103.07 ? CT C2F 302 B 1 
HETATM 32 O O1 C2F . . . J 4 -18.446 82.445 -27.595 1 103.07 ? O1 C2F 302 B 1 
HETATM 33 O O2 C2F . . . J 4 -19.512 82.386 -29.511 1 103.07 ? O2 C2F 302 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           33 
#