data_4DJE
#
_model_server_result.job_id            cdGgH6RLzSoKasviTWS7Dg 
_model_server_result.datetime_utc      '2024-11-14 03:55:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4dje 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    4DJE 
#
_exptl.entry_id    4DJE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DJE 
_cell.length_a            136.419 
_cell.length_b            250.664 
_cell.length_c            82.427 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DJE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C SG CYS 17 C CYS 17 1_555 K FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 C SG CYS 20 C CYS 20 1_555 K FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc3 C SG CYS 25 C CYS 25 1_555 K FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc4 C SG CYS 42 C CYS 42 1_555 K FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc5 E SG CYS 17 E CYS 17 1_555 M FE2 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc6 E SG CYS 20 E CYS 20 1_555 M FE1 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc7 E SG CYS 25 E CYS 25 1_555 M FE4 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc8 E SG CYS 42 E CYS 42 1_555 M FE3 SF4 . E SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 540 n n 
FE1 S3 SF4 sing 541 n n 
FE1 S4 SF4 sing 542 n n 
FE2 S1 SF4 sing 543 n n 
FE2 S3 SF4 sing 544 n n 
FE2 S4 SF4 sing 545 n n 
FE3 S1 SF4 sing 546 n n 
FE3 S2 SF4 sing 547 n n 
FE3 S4 SF4 sing 548 n n 
FE4 S1 SF4 sing 549 n n 
FE4 S2 SF4 sing 550 n n 
FE4 S3 SF4 sing 551 n n 
#
_atom_sites.entry_id                     4DJE 
_atom_sites.fract_transf_matrix[1][1]    0.00733 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003989 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 C2F A 1 300 300 C2F C2F . 
H 5 CA A 1 301 301 CA CA . 
I 5 CA B 1 301 301 CA CA . 
J 4 C2F B 1 302 300 C2F C2F . 
K 6 SF4 C 1 501 500 SF4 SF4 . 
L 7 B12 C 1 502 600 B12 B12 . 
M 6 SF4 E 1 501 500 SF4 SF4 . 
N 7 B12 E 1 502 600 B12 B12 . 
O 8 HOH A 1 401 3 HOH HOH . 
O 8 HOH A 2 402 5 HOH HOH . 
O 8 HOH A 3 403 6 HOH HOH . 
P 8 HOH B 1 401 1 HOH HOH . 
P 8 HOH B 2 402 2 HOH HOH . 
P 8 HOH B 3 403 4 HOH HOH . 
Q 8 HOH D 1 401 7 HOH HOH . 
Q 8 HOH D 2 402 8 HOH HOH . 
R 8 HOH E 1 601 9 HOH HOH . 
S 8 HOH F 1 401 10 HOH HOH . 
S 8 HOH F 2 402 11 HOH HOH . 
S 8 HOH F 3 403 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . M 6 16.889 72.373 -2.833 1 165.68 ? FE1 SF4 501 E 1 
HETATM 2 FE FE2 SF4 . . . M 6 17.375 72.957 -0.204 1 165.68 ? FE2 SF4 501 E 1 
HETATM 3 FE FE3 SF4 . . . M 6 17.324 70.353 -1.045 1 165.68 ? FE3 SF4 501 E 1 
HETATM 4 FE FE4 SF4 . . . M 6 15.004 71.801 -0.935 1 165.68 ? FE4 SF4 501 E 1 
HETATM 5 S S1 SF4 . . . M 6 16.332 71.207 0.821 1 165.68 ? S1 SF4 501 E 1 
HETATM 6 S S2 SF4 . . . M 6 15.692 70.444 -2.633 1 165.68 ? S2 SF4 501 E 1 
HETATM 7 S S3 SF4 . . . M 6 15.761 73.868 -1.533 1 165.68 ? S3 SF4 501 E 1 
HETATM 8 S S4 SF4 . . . M 6 18.806 71.964 -1.673 1 165.68 ? S4 SF4 501 E 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           8 
#