data_4DJH
#
_model_server_result.job_id            gNDUSd2yOGJj5qh1K1SCkw 
_model_server_result.datetime_utc      '2024-11-26 12:35:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4djh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1300}' 
#
_entry.id    4DJH 
#
_exptl.entry_id    4DJH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              465.628 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R)-7-hydroxy-N-{(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethylpiperidin-1-yl]-3-methylbutan-2-yl}-1,2,3,4-tetrahydroisoquinoline-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4DJH 
_cell.length_a            54.896 
_cell.length_b            147.297 
_cell.length_c            205.288 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4DJH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
B,E,F,G,H,I,K 2 1 
A,C,D,J 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -73.6485 102.644 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 94 A CYS 131 1_555 A SG CYS 173 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 94 B CYS 131 1_555 B SG CYS 173 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A C GLY 224 A GLY 261 1_555 A N ASN 225 A ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A N ARG 385 A ARG 263 1_555 A C TYR 384 A TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 B C GLY 224 B GLY 261 1_555 B N ASN 225 B ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B N ARG 385 B ARG 263 1_555 B C TYR 384 B TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C28 H39 N3 O3' 
_chem_comp.formula_weight    465.628 
_chem_comp.id                JDC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R)-7-hydroxy-N-{(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethylpiperidin-1-yl]-3-methylbutan-2-yl}-1,2,3,4-tetrahydroisoquinoline-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3B C3A JDC sing 193 n n 
C3A C3D JDC sing 194 n n 
C3A C2A JDC sing 195 n n 
C4D C2A JDC sing 196 n n 
C4D N11 JDC sing 197 n n 
C2A N2A JDC sing 198 n n 
N2A C1A JDC sing 199 n n 
C61 N11 JDC sing 200 n n 
C61 C51 JDC sing 201 n n 
N11 C21 JDC sing 202 n n 
C1A C3 JDC sing 203 n n 
C1A O1 JDC doub 204 n n 
C3 C4 JDC sing 205 n n 
C3 N2 JDC sing 206 n n 
C4 C4A JDC sing 207 n n 
C5 C4A JDC doub 208 n y 
C5 C6 JDC sing 209 n y 
C4A C8A JDC sing 210 n y 
C21 C31 JDC sing 211 n n 
C6 C7 JDC doub 212 n y 
C51 C41 JDC sing 213 n n 
C8A C1 JDC sing 214 n n 
C8A C8 JDC doub 215 n y 
N2 C1 JDC sing 216 n n 
C7 C8 JDC sing 217 n y 
C7 O7 JDC sing 218 n n 
C4E C41 JDC sing 219 n n 
C41 C31 JDC sing 220 n n 
C41 C1C JDC sing 221 n n 
C31 C34 JDC sing 222 n n 
C1C C6C JDC doub 223 n y 
C1C C2C JDC sing 224 n y 
C6C C5C JDC sing 225 n y 
C2C C3C JDC doub 226 n y 
C5C C4C JDC doub 227 n y 
C3C C4C JDC sing 228 n y 
C3C O3C JDC sing 229 n n 
C1 H1 JDC sing 230 n n 
C1 H2 JDC sing 231 n n 
N2 H3 JDC sing 232 n n 
C3 H5 JDC sing 233 n n 
C4 H6 JDC sing 234 n n 
C4 H7 JDC sing 235 n n 
C5 H8 JDC sing 236 n n 
C6 H9 JDC sing 237 n n 
O7 H10 JDC sing 238 n n 
C8 H11 JDC sing 239 n n 
N2A H12 JDC sing 240 n n 
C2A H13 JDC sing 241 n n 
C3A H14 JDC sing 242 n n 
C3D H15 JDC sing 243 n n 
C3D H16 JDC sing 244 n n 
C3D H17 JDC sing 245 n n 
C3B H18 JDC sing 246 n n 
C3B H19 JDC sing 247 n n 
C3B H20 JDC sing 248 n n 
C4D H21 JDC sing 249 n n 
C4D H22 JDC sing 250 n n 
C21 H24 JDC sing 251 n n 
C21 H25 JDC sing 252 n n 
C31 H26 JDC sing 253 n n 
C34 H27 JDC sing 254 n n 
C34 H28 JDC sing 255 n n 
C34 H29 JDC sing 256 n n 
C51 H30 JDC sing 257 n n 
C51 H31 JDC sing 258 n n 
C61 H32 JDC sing 259 n n 
C61 H33 JDC sing 260 n n 
C4E H34 JDC sing 261 n n 
C4E H35 JDC sing 262 n n 
C4E H36 JDC sing 263 n n 
C2C H37 JDC sing 264 n n 
O3C H38 JDC sing 265 n n 
C4C H39 JDC sing 266 n n 
C5C H40 JDC sing 267 n n 
C6C H41 JDC sing 268 n n 
#
_atom_sites.entry_id                     4DJH 
_atom_sites.fract_transf_matrix[1][1]    0.018216 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JDC A 1 1300 1300 JDC JDC . 
D 3 CIT A 1 1301 1301 CIT CIT . 
E 2 JDC B 1 1300 1300 JDC JDC . 
F 4 OLC B 1 1302 1302 OLC OLC . 
G 4 OLC B 1 1303 1303 OLC OLC . 
H 5 PEG B 1 1304 1304 PEG PEG . 
I 5 PEG B 1 1305 1305 PEG PEG . 
J 6 HOH A 1 1303 1303 HOH HOH . 
J 6 HOH A 2 1304 1304 HOH HOH . 
J 6 HOH A 3 1305 1305 HOH HOH . 
J 6 HOH A 4 1306 1306 HOH HOH . 
J 6 HOH A 5 1307 1307 HOH HOH . 
J 6 HOH A 6 1308 1308 HOH HOH . 
J 6 HOH A 7 1309 1309 HOH HOH . 
J 6 HOH A 8 1310 1310 HOH HOH . 
J 6 HOH A 9 1311 1311 HOH HOH . 
J 6 HOH A 10 1312 1312 HOH HOH . 
J 6 HOH A 11 1313 1313 HOH HOH . 
K 6 HOH B 1 1306 1306 HOH HOH . 
K 6 HOH B 2 1307 1307 HOH HOH . 
K 6 HOH B 3 1308 1308 HOH HOH . 
K 6 HOH B 4 1309 1309 HOH HOH . 
K 6 HOH B 5 1310 1310 HOH HOH . 
K 6 HOH B 6 1311 1311 HOH HOH . 
K 6 HOH B 7 1312 1312 HOH HOH . 
K 6 HOH B 8 1313 1313 HOH HOH . 
K 6 HOH B 9 1314 1314 HOH HOH . 
K 6 HOH B 10 1315 1315 HOH HOH . 
K 6 HOH B 11 1316 1316 HOH HOH . 
K 6 HOH B 12 1318 1318 HOH HOH . 
K 6 HOH B 13 1319 1319 HOH HOH . 
K 6 HOH B 14 1320 1320 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JDC . . . E 2 4.756 -64.175 60.175 1 74.61 ? C1 JDC 1300 B 1 
HETATM 2 N N2 JDC . . . E 2 4.887 -62.797 59.861 1 69.84 ? N2 JDC 1300 B 1 
HETATM 3 C C3 JDC . . . E 2 5.624 -62.564 58.659 1 67.14 ? C3 JDC 1300 B 1 
HETATM 4 C C4 JDC . . . E 2 7.014 -63.18 58.682 1 48.82 ? C4 JDC 1300 B 1 
HETATM 5 C C4A JDC . . . E 2 6.993 -64.58 59.217 1 55.62 ? C4A JDC 1300 B 1 
HETATM 6 C C5 JDC . . . E 2 8.128 -65.463 58.987 1 56.04 ? C5 JDC 1300 B 1 
HETATM 7 C C6 JDC . . . E 2 8.11 -66.785 59.493 1 54.65 ? C6 JDC 1300 B 1 
HETATM 8 C C7 JDC . . . E 2 7.013 -67.242 60.206 1 65.59 ? C7 JDC 1300 B 1 
HETATM 9 O O7 JDC . . . E 2 6.983 -68.499 60.694 1 55.14 ? O7 JDC 1300 B 1 
HETATM 10 C C8 JDC . . . E 2 5.928 -66.389 60.42 1 61.82 ? C8 JDC 1300 B 1 
HETATM 11 C C8A JDC . . . E 2 5.941 -65.019 59.901 1 56.77 ? C8A JDC 1300 B 1 
HETATM 12 C C1A JDC . . . E 2 5.748 -61.068 58.383 1 74.37 ? C1A JDC 1300 B 1 
HETATM 13 O O1 JDC . . . E 2 6.547 -60.366 59.014 1 77.5 ? O1 JDC 1300 B 1 
HETATM 14 N N2A JDC . . . E 2 4.922 -60.474 57.361 1 65.62 ? N2A JDC 1300 B 1 
HETATM 15 C C2A JDC . . . E 2 5.042 -59.087 57.093 1 65.03 ? C2A JDC 1300 B 1 
HETATM 16 C C3A JDC . . . E 2 5.642 -59.047 55.681 1 73.06 ? C3A JDC 1300 B 1 
HETATM 17 C C3D JDC . . . E 2 7.086 -59.68 55.617 1 50.72 ? C3D JDC 1300 B 1 
HETATM 18 C C3B JDC . . . E 2 5.544 -57.767 54.956 1 80.44 ? C3B JDC 1300 B 1 
HETATM 19 C C4D JDC . . . E 2 3.722 -58.364 57.135 1 63.05 ? C4D JDC 1300 B 1 
HETATM 20 N N11 JDC . . . E 2 3.042 -58.189 58.496 1 55.64 ? N11 JDC 1300 B 1 
HETATM 21 C C21 JDC . . . E 2 3.855 -57.584 59.526 1 62.25 ? C21 JDC 1300 B 1 
HETATM 22 C C31 JDC . . . E 2 3.376 -57.902 60.895 1 62.49 ? C31 JDC 1300 B 1 
HETATM 23 C C34 JDC . . . E 2 3.685 -59.41 61.223 1 55.89 ? C34 JDC 1300 B 1 
HETATM 24 C C41 JDC . . . E 2 1.949 -57.631 61.039 1 66.25 ? C41 JDC 1300 B 1 
HETATM 25 C C51 JDC . . . E 2 1.161 -58.317 60.048 1 65.77 ? C51 JDC 1300 B 1 
HETATM 26 C C61 JDC . . . E 2 1.614 -58.033 58.666 1 57.52 ? C61 JDC 1300 B 1 
HETATM 27 C C4E JDC . . . E 2 1.764 -56.144 60.78 1 49.96 ? C4E JDC 1300 B 1 
HETATM 28 C C1C JDC . . . E 2 1.461 -57.854 62.467 1 81.5 ? C1C JDC 1300 B 1 
HETATM 29 C C2C JDC . . . E 2 2.137 -57.252 63.531 1 87.94 ? C2C JDC 1300 B 1 
HETATM 30 C C3C JDC . . . E 2 1.681 -57.449 64.849 1 89.97 ? C3C JDC 1300 B 1 
HETATM 31 O O3C JDC . . . E 2 2.395 -56.83 65.946 1 92.5 ? O3C JDC 1300 B 1 
HETATM 32 C C4C JDC . . . E 2 0.522 -58.261 65.094 1 99.42 ? C4C JDC 1300 B 1 
HETATM 33 C C5C JDC . . . E 2 -0.149 -58.851 64.033 1 99.72 ? C5C JDC 1300 B 1 
HETATM 34 C C6C JDC . . . E 2 0.301 -58.657 62.712 1 92.5 ? C6C JDC 1300 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           34 
#