data_4DJH # _model_server_result.job_id x59D3zIn13U4XvVlDHk3Kg _model_server_result.datetime_utc '2024-11-26 12:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4djh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1301}' # _entry.id 4DJH # _exptl.entry_id 4DJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DJH _cell.length_a 54.896 _cell.length_b 147.297 _cell.length_c 205.288 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 B,E,F,G,H,I,K 2 1 A,C,D,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -73.6485 102.644 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 94 A CYS 131 1_555 A SG CYS 173 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 94 B CYS 131 1_555 B SG CYS 173 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C GLY 224 A GLY 261 1_555 A N ASN 225 A ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A N ARG 385 A ARG 263 1_555 A C TYR 384 A TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C GLY 224 B GLY 261 1_555 B N ASN 225 B ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B N ARG 385 B ARG 263 1_555 B C TYR 384 B TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4DJH _atom_sites.fract_transf_matrix[1][1] 0.018216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JDC A 1 1300 1300 JDC JDC . D 3 CIT A 1 1301 1301 CIT CIT . E 2 JDC B 1 1300 1300 JDC JDC . F 4 OLC B 1 1302 1302 OLC OLC . G 4 OLC B 1 1303 1303 OLC OLC . H 5 PEG B 1 1304 1304 PEG PEG . I 5 PEG B 1 1305 1305 PEG PEG . J 6 HOH A 1 1303 1303 HOH HOH . J 6 HOH A 2 1304 1304 HOH HOH . J 6 HOH A 3 1305 1305 HOH HOH . J 6 HOH A 4 1306 1306 HOH HOH . J 6 HOH A 5 1307 1307 HOH HOH . J 6 HOH A 6 1308 1308 HOH HOH . J 6 HOH A 7 1309 1309 HOH HOH . J 6 HOH A 8 1310 1310 HOH HOH . J 6 HOH A 9 1311 1311 HOH HOH . J 6 HOH A 10 1312 1312 HOH HOH . J 6 HOH A 11 1313 1313 HOH HOH . K 6 HOH B 1 1306 1306 HOH HOH . K 6 HOH B 2 1307 1307 HOH HOH . K 6 HOH B 3 1308 1308 HOH HOH . K 6 HOH B 4 1309 1309 HOH HOH . K 6 HOH B 5 1310 1310 HOH HOH . K 6 HOH B 6 1311 1311 HOH HOH . K 6 HOH B 7 1312 1312 HOH HOH . K 6 HOH B 8 1313 1313 HOH HOH . K 6 HOH B 9 1314 1314 HOH HOH . K 6 HOH B 10 1315 1315 HOH HOH . K 6 HOH B 11 1316 1316 HOH HOH . K 6 HOH B 12 1318 1318 HOH HOH . K 6 HOH B 13 1319 1319 HOH HOH . K 6 HOH B 14 1320 1320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 -15.349 -16.845 -2.448 1 151.61 ? C1 CIT 1301 A 1 HETATM 2 O O1 CIT . . . D 3 -15.633 -17.972 -1.987 1 148.14 ? O1 CIT 1301 A 1 HETATM 3 O O2 CIT . . . D 3 -14.366 -16.228 -1.974 1 142.06 ? O2 CIT 1301 A 1 HETATM 4 C C2 CIT . . . D 3 -16.196 -16.236 -3.546 1 160.1 ? C2 CIT 1301 A 1 HETATM 5 C C3 CIT . . . D 3 -15.662 -16.592 -4.933 1 159.04 ? C3 CIT 1301 A 1 HETATM 6 O O7 CIT . . . D 3 -14.393 -15.916 -5.14 1 166.02 ? O7 CIT 1301 A 1 HETATM 7 C C4 CIT . . . D 3 -16.641 -16.142 -6.009 1 148.58 ? C4 CIT 1301 A 1 HETATM 8 C C5 CIT . . . D 3 -16.088 -14.916 -6.69 1 142.75 ? C5 CIT 1301 A 1 HETATM 9 O O3 CIT . . . D 3 -16.463 -13.775 -6.345 1 140.65 ? O3 CIT 1301 A 1 HETATM 10 O O4 CIT . . . D 3 -15.245 -15.034 -7.607 1 140.02 ? O4 CIT 1301 A 1 HETATM 11 C C6 CIT . . . D 3 -15.498 -18.099 -5.075 1 152.51 ? C6 CIT 1301 A 1 HETATM 12 O O5 CIT . . . D 3 -16.271 -18.888 -4.486 1 161.01 ? O5 CIT 1301 A 1 HETATM 13 O O6 CIT . . . D 3 -14.587 -18.561 -5.798 1 129.12 ? O6 CIT 1301 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #