data_4DJH # _model_server_result.job_id U2GqEjzYlj33DCYq90AqVA _model_server_result.datetime_utc '2024-11-26 12:50:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4djh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1303}' # _entry.id 4DJH # _exptl.entry_id 4DJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DJH _cell.length_a 54.896 _cell.length_b 147.297 _cell.length_c 205.288 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 B,E,F,G,H,I,K 2 1 A,C,D,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -73.6485 102.644 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 94 A CYS 131 1_555 A SG CYS 173 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 94 B CYS 131 1_555 B SG CYS 173 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C GLY 224 A GLY 261 1_555 A N ASN 225 A ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A N ARG 385 A ARG 263 1_555 A C TYR 384 A TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C GLY 224 B GLY 261 1_555 B N ASN 225 B ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B N ARG 385 B ARG 263 1_555 B C TYR 384 B TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 4DJH _atom_sites.fract_transf_matrix[1][1] 0.018216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JDC A 1 1300 1300 JDC JDC . D 3 CIT A 1 1301 1301 CIT CIT . E 2 JDC B 1 1300 1300 JDC JDC . F 4 OLC B 1 1302 1302 OLC OLC . G 4 OLC B 1 1303 1303 OLC OLC . H 5 PEG B 1 1304 1304 PEG PEG . I 5 PEG B 1 1305 1305 PEG PEG . J 6 HOH A 1 1303 1303 HOH HOH . J 6 HOH A 2 1304 1304 HOH HOH . J 6 HOH A 3 1305 1305 HOH HOH . J 6 HOH A 4 1306 1306 HOH HOH . J 6 HOH A 5 1307 1307 HOH HOH . J 6 HOH A 6 1308 1308 HOH HOH . J 6 HOH A 7 1309 1309 HOH HOH . J 6 HOH A 8 1310 1310 HOH HOH . J 6 HOH A 9 1311 1311 HOH HOH . J 6 HOH A 10 1312 1312 HOH HOH . J 6 HOH A 11 1313 1313 HOH HOH . K 6 HOH B 1 1306 1306 HOH HOH . K 6 HOH B 2 1307 1307 HOH HOH . K 6 HOH B 3 1308 1308 HOH HOH . K 6 HOH B 4 1309 1309 HOH HOH . K 6 HOH B 5 1310 1310 HOH HOH . K 6 HOH B 6 1311 1311 HOH HOH . K 6 HOH B 7 1312 1312 HOH HOH . K 6 HOH B 8 1313 1313 HOH HOH . K 6 HOH B 9 1314 1314 HOH HOH . K 6 HOH B 10 1315 1315 HOH HOH . K 6 HOH B 11 1316 1316 HOH HOH . K 6 HOH B 12 1318 1318 HOH HOH . K 6 HOH B 13 1319 1319 HOH HOH . K 6 HOH B 14 1320 1320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . G 4 5.411 -79.485 36.282 1 68.04 ? C10 OLC 1303 B 1 HETATM 2 C C9 OLC . . . G 4 5.607 -79.692 34.978 1 61.66 ? C9 OLC 1303 B 1 HETATM 3 C C11 OLC . . . G 4 6.365 -79.813 37.408 1 65.57 ? C11 OLC 1303 B 1 HETATM 4 C C8 OLC . . . G 4 6.842 -80.316 34.383 1 52.85 ? C8 OLC 1303 B 1 HETATM 5 C C24 OLC . . . G 4 6.659 -81.568 25.287 1 104.93 ? C24 OLC 1303 B 1 HETATM 6 C C12 OLC . . . G 4 5.762 -79.144 38.641 1 77.91 ? C12 OLC 1303 B 1 HETATM 7 C C7 OLC . . . G 4 6.428 -81.492 33.5 1 74.02 ? C7 OLC 1303 B 1 HETATM 8 C C13 OLC . . . G 4 6.672 -79.149 39.869 1 78.18 ? C13 OLC 1303 B 1 HETATM 9 C C6 OLC . . . G 4 5.454 -81.083 32.394 1 73.65 ? C6 OLC 1303 B 1 HETATM 10 C C14 OLC . . . G 4 5.956 -78.547 41.082 1 72.09 ? C14 OLC 1303 B 1 HETATM 11 C C5 OLC . . . G 4 4.805 -82.29 31.721 1 69.36 ? C5 OLC 1303 B 1 HETATM 12 C C4 OLC . . . G 4 5.784 -83.182 30.965 1 65.54 ? C4 OLC 1303 B 1 HETATM 13 C C3 OLC . . . G 4 4.996 -84.359 30.387 1 87.97 ? C3 OLC 1303 B 1 HETATM 14 C C2 OLC . . . G 4 5.858 -85.379 29.64 1 116.31 ? C2 OLC 1303 B 1 HETATM 15 C C21 OLC . . . G 4 6.357 -83.914 26.074 1 118.53 ? C21 OLC 1303 B 1 HETATM 16 C C1 OLC . . . G 4 5.801 -85.208 28.132 1 138.89 ? C1 OLC 1303 B 1 HETATM 17 C C22 OLC . . . G 4 7.384 -82.856 25.68 1 114.88 ? C22 OLC 1303 B 1 HETATM 18 O O19 OLC . . . G 4 5.363 -86.101 27.411 1 145.29 ? O19 OLC 1303 B 1 HETATM 19 O O25 OLC . . . G 4 7.588 -80.635 24.712 1 75.46 ? O25 OLC 1303 B 1 HETATM 20 O O23 OLC . . . G 4 8.257 -82.6 26.796 1 111.21 ? O23 OLC 1303 B 1 HETATM 21 O O20 OLC . . . G 4 6.286 -83.982 27.505 1 134.79 ? O20 OLC 1303 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 433 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #