data_4DJH # _model_server_result.job_id 5tD5mj-LZNFOIuA6_Z17bQ _model_server_result.datetime_utc '2024-11-26 12:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4djh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1305}' # _entry.id 4DJH # _exptl.entry_id 4DJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4DJH _cell.length_a 54.896 _cell.length_b 147.297 _cell.length_c 205.288 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4DJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 B,E,F,G,H,I,K 2 1 A,C,D,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -73.6485 102.644 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 94 A CYS 131 1_555 A SG CYS 173 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 94 B CYS 131 1_555 B SG CYS 173 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C GLY 224 A GLY 261 1_555 A N ASN 225 A ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A N ARG 385 A ARG 263 1_555 A C TYR 384 A TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C GLY 224 B GLY 261 1_555 B N ASN 225 B ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B N ARG 385 B ARG 263 1_555 B C TYR 384 B TYR 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 397 n n C1 C2 PEG sing 398 n n C1 H11 PEG sing 399 n n C1 H12 PEG sing 400 n n O1 HO1 PEG sing 401 n n C2 O2 PEG sing 402 n n C2 H21 PEG sing 403 n n C2 H22 PEG sing 404 n n O2 C3 PEG sing 405 n n C3 C4 PEG sing 406 n n C3 H31 PEG sing 407 n n C3 H32 PEG sing 408 n n C4 O4 PEG sing 409 n n C4 H41 PEG sing 410 n n C4 H42 PEG sing 411 n n O4 HO4 PEG sing 412 n n # _atom_sites.entry_id 4DJH _atom_sites.fract_transf_matrix[1][1] 0.018216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JDC A 1 1300 1300 JDC JDC . D 3 CIT A 1 1301 1301 CIT CIT . E 2 JDC B 1 1300 1300 JDC JDC . F 4 OLC B 1 1302 1302 OLC OLC . G 4 OLC B 1 1303 1303 OLC OLC . H 5 PEG B 1 1304 1304 PEG PEG . I 5 PEG B 1 1305 1305 PEG PEG . J 6 HOH A 1 1303 1303 HOH HOH . J 6 HOH A 2 1304 1304 HOH HOH . J 6 HOH A 3 1305 1305 HOH HOH . J 6 HOH A 4 1306 1306 HOH HOH . J 6 HOH A 5 1307 1307 HOH HOH . J 6 HOH A 6 1308 1308 HOH HOH . J 6 HOH A 7 1309 1309 HOH HOH . J 6 HOH A 8 1310 1310 HOH HOH . J 6 HOH A 9 1311 1311 HOH HOH . J 6 HOH A 10 1312 1312 HOH HOH . J 6 HOH A 11 1313 1313 HOH HOH . K 6 HOH B 1 1306 1306 HOH HOH . K 6 HOH B 2 1307 1307 HOH HOH . K 6 HOH B 3 1308 1308 HOH HOH . K 6 HOH B 4 1309 1309 HOH HOH . K 6 HOH B 5 1310 1310 HOH HOH . K 6 HOH B 6 1311 1311 HOH HOH . K 6 HOH B 7 1312 1312 HOH HOH . K 6 HOH B 8 1313 1313 HOH HOH . K 6 HOH B 9 1314 1314 HOH HOH . K 6 HOH B 10 1315 1315 HOH HOH . K 6 HOH B 11 1316 1316 HOH HOH . K 6 HOH B 12 1318 1318 HOH HOH . K 6 HOH B 13 1319 1319 HOH HOH . K 6 HOH B 14 1320 1320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . I 5 4.129 -66.637 24.208 1 97.12 ? C1 PEG 1305 B 1 HETATM 2 O O1 PEG . . . I 5 5.162 -67.011 23.375 1 101.61 ? O1 PEG 1305 B 1 HETATM 3 C C2 PEG . . . I 5 4.688 -66.103 25.479 1 93.49 ? C2 PEG 1305 B 1 HETATM 4 O O2 PEG . . . I 5 3.653 -65.572 26.204 1 94.12 ? O2 PEG 1305 B 1 HETATM 5 C C3 PEG . . . I 5 3.784 -65.443 27.563 1 95.73 ? C3 PEG 1305 B 1 HETATM 6 C C4 PEG . . . I 5 2.723 -64.522 28.053 1 100.05 ? C4 PEG 1305 B 1 HETATM 7 O O4 PEG . . . I 5 2.812 -64.405 29.426 1 94.04 ? O4 PEG 1305 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 7 #